>Q7T3C6:CPSF5_DANRE Cleavage and polyadenylation specificity factor 5 - Danio rerio|
           (Zebrafish) (Brachydanio rerio)
          Length = 228
 Score =  240 bits (612), Expect = 9e-63
 Identities = 112/189 (59%), Positives = 138/189 (73%)
 Frame = +3

Query: 189 VNVYPLANYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHNHPHILL 368
           +N+YPL NYTFGTKEP  EKD+SVA R  RM+  + K GMR +VE +L+V EH  PH+LL
Sbjct: 38  INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFEKIGMRRTVEGVLIVHEHRLPHVLL 97

Query: 369 LQIGNTFCKLPGGRLKPGENEIEGLKRKLCSKLAVNSPSFPPNWQVGECVAVWWRPNFET 548
           LQ+G TF KLPGG L PGE+E+EGLKR L +++         +W + +C+  WWRPNFE 
Sbjct: 98  LQLGTTFFKLPGGELNPGEDEVEGLKR-LMTEILGRQDGVKQDWVIDDCIGNWWRPNFEP 156

Query: 549 VMYPYCPPHITKPKECKKLFIVHLTEREYFAVPRNLKLLAVPLFELYDNVQRYGPVISTI 728
             YPY P HITKPKE KKLF+V L E+  FAVP+N KL+A PLFELYDN   YGP+IS++
Sbjct: 157 PQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSL 216

Query: 729 PQQLSRFQF 755
           PQ LSRF F
Sbjct: 217 PQLLSRFNF 225

>Q6DJE4:CPSF5_XENLA Cleavage and polyadenylation specificity factor 5 - Xenopus laevis|
           (African clawed frog)
          Length = 227

 Score =  239 bits (611), Expect = 1e-62
 Identities = 112/189 (59%), Positives = 138/189 (73%)
 Frame = +3

Query: 189 VNVYPLANYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHNHPHILL 368
           +N+YPL NYTFGTKEP  EKD+SVA R  RM+  + K GMR +VE +L+V EH  PH+LL
Sbjct: 37  INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLL 96

Query: 369 LQIGNTFCKLPGGRLKPGENEIEGLKRKLCSKLAVNSPSFPPNWQVGECVAVWWRPNFET 548
           LQ+G TF KLPGG L PGE+E+EGLKR L +++         +W + +C+  WWRPNFE 
Sbjct: 97  LQLGTTFFKLPGGELNPGEDEVEGLKR-LMTEILGRQDGVQQDWVIDDCIGNWWRPNFEP 155

Query: 549 VMYPYCPPHITKPKECKKLFIVHLTEREYFAVPRNLKLLAVPLFELYDNVQRYGPVISTI 728
             YPY P HITKPKE KKLF+V L E+  FAVP+N KL+A PLFELYDN   YGP+IS++
Sbjct: 156 PQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSL 215

Query: 729 PQQLSRFQF 755
           PQ LSRF F
Sbjct: 216 PQLLSRFNF 224

>Q4KM65:CPSF5_RAT Cleavage and polyadenylation specificity factor 5 - Rattus|
           norvegicus (Rat)
          Length = 227

 Score =  239 bits (609), Expect = 2e-62
 Identities = 112/189 (59%), Positives = 138/189 (73%)
 Frame = +3

Query: 189 VNVYPLANYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHNHPHILL 368
           +N+YPL NYTFGTKEP  EKD+SVA R  RM+  + K GMR +VE +L+V EH  PH+LL
Sbjct: 37  INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLL 96

Query: 369 LQIGNTFCKLPGGRLKPGENEIEGLKRKLCSKLAVNSPSFPPNWQVGECVAVWWRPNFET 548
           LQ+G TF KLPGG L PGE+E+EGLKR L +++         +W + +C+  WWRPNFE 
Sbjct: 97  LQLGTTFFKLPGGELNPGEDEVEGLKR-LMTEILGRQDGVLQDWVIDDCIGNWWRPNFEP 155

Query: 549 VMYPYCPPHITKPKECKKLFIVHLTEREYFAVPRNLKLLAVPLFELYDNVQRYGPVISTI 728
             YPY P HITKPKE KKLF+V L E+  FAVP+N KL+A PLFELYDN   YGP+IS++
Sbjct: 156 PQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSL 215

Query: 729 PQQLSRFQF 755
           PQ LSRF F
Sbjct: 216 PQLLSRFNF 224

>Q5RAI8:CPSF5_PONPY Cleavage and polyadenylation specificity factor 5 - Pongo pygmaeus|
           (Orangutan)
          Length = 227

 Score =  239 bits (609), Expect = 2e-62
 Identities = 112/189 (59%), Positives = 138/189 (73%)
 Frame = +3

Query: 189 VNVYPLANYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHNHPHILL 368
           +N+YPL NYTFGTKEP  EKD+SVA R  RM+  + K GMR +VE +L+V EH  PH+LL
Sbjct: 37  INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLL 96

Query: 369 LQIGNTFCKLPGGRLKPGENEIEGLKRKLCSKLAVNSPSFPPNWQVGECVAVWWRPNFET 548
           LQ+G TF KLPGG L PGE+E+EGLKR L +++         +W + +C+  WWRPNFE 
Sbjct: 97  LQLGTTFFKLPGGELNPGEDEVEGLKR-LMTEILGRQDGVLQDWVIDDCIGNWWRPNFEP 155

Query: 549 VMYPYCPPHITKPKECKKLFIVHLTEREYFAVPRNLKLLAVPLFELYDNVQRYGPVISTI 728
             YPY P HITKPKE KKLF+V L E+  FAVP+N KL+A PLFELYDN   YGP+IS++
Sbjct: 156 PQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSL 215

Query: 729 PQQLSRFQF 755
           PQ LSRF F
Sbjct: 216 PQLLSRFNF 224

>Q9CQF3:CPSF5_MOUSE Cleavage and polyadenylation specificity factor 5 - Mus musculus|
           (Mouse)
          Length = 227

 Score =  239 bits (609), Expect = 2e-62
 Identities = 112/189 (59%), Positives = 138/189 (73%)
 Frame = +3

Query: 189 VNVYPLANYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHNHPHILL 368
           +N+YPL NYTFGTKEP  EKD+SVA R  RM+  + K GMR +VE +L+V EH  PH+LL
Sbjct: 37  INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLL 96

Query: 369 LQIGNTFCKLPGGRLKPGENEIEGLKRKLCSKLAVNSPSFPPNWQVGECVAVWWRPNFET 548
           LQ+G TF KLPGG L PGE+E+EGLKR L +++         +W + +C+  WWRPNFE 
Sbjct: 97  LQLGTTFFKLPGGELNPGEDEVEGLKR-LMTEILGRQDGVLQDWVIDDCIGNWWRPNFEP 155

Query: 549 VMYPYCPPHITKPKECKKLFIVHLTEREYFAVPRNLKLLAVPLFELYDNVQRYGPVISTI 728
             YPY P HITKPKE KKLF+V L E+  FAVP+N KL+A PLFELYDN   YGP+IS++
Sbjct: 156 PQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSL 215

Query: 729 PQQLSRFQF 755
           PQ LSRF F
Sbjct: 216 PQLLSRFNF 224

>O43809:CPSF5_HUMAN Cleavage and polyadenylation specificity factor 5 - Homo sapiens|
           (Human)
          Length = 227

 Score =  239 bits (609), Expect = 2e-62
 Identities = 112/189 (59%), Positives = 138/189 (73%)
 Frame = +3

Query: 189 VNVYPLANYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHNHPHILL 368
           +N+YPL NYTFGTKEP  EKD+SVA R  RM+  + K GMR +VE +L+V EH  PH+LL
Sbjct: 37  INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLL 96

Query: 369 LQIGNTFCKLPGGRLKPGENEIEGLKRKLCSKLAVNSPSFPPNWQVGECVAVWWRPNFET 548
           LQ+G TF KLPGG L PGE+E+EGLKR L +++         +W + +C+  WWRPNFE 
Sbjct: 97  LQLGTTFFKLPGGELNPGEDEVEGLKR-LMTEILGRQDGVLQDWVIDDCIGNWWRPNFEP 155

Query: 549 VMYPYCPPHITKPKECKKLFIVHLTEREYFAVPRNLKLLAVPLFELYDNVQRYGPVISTI 728
             YPY P HITKPKE KKLF+V L E+  FAVP+N KL+A PLFELYDN   YGP+IS++
Sbjct: 156 PQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSL 215

Query: 729 PQQLSRFQF 755
           PQ LSRF F
Sbjct: 216 PQLLSRFNF 224

>Q3ZCA2:CPSF5_BOVIN Cleavage and polyadenylation specificity factor 5 - Bos taurus|
           (Bovine)
          Length = 227

 Score =  239 bits (609), Expect = 2e-62
 Identities = 112/189 (59%), Positives = 138/189 (73%)
 Frame = +3

Query: 189 VNVYPLANYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHNHPHILL 368
           +N+YPL NYTFGTKEP  EKD+SVA R  RM+  + K GMR +VE +L+V EH  PH+LL
Sbjct: 37  INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLL 96

Query: 369 LQIGNTFCKLPGGRLKPGENEIEGLKRKLCSKLAVNSPSFPPNWQVGECVAVWWRPNFET 548
           LQ+G TF KLPGG L PGE+E+EGLKR L +++         +W + +C+  WWRPNFE 
Sbjct: 97  LQLGTTFFKLPGGELNPGEDEVEGLKR-LMTEILGRQDGVLQDWVIDDCIGNWWRPNFEP 155

Query: 549 VMYPYCPPHITKPKECKKLFIVHLTEREYFAVPRNLKLLAVPLFELYDNVQRYGPVISTI 728
             YPY P HITKPKE KKLF+V L E+  FAVP+N KL+A PLFELYDN   YGP+IS++
Sbjct: 156 PQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSL 215

Query: 729 PQQLSRFQF 755
           PQ LSRF F
Sbjct: 216 PQLLSRFNF 224

>Q6ZRI6:CO039_HUMAN Uncharacterized protein C15orf39 - Homo sapiens (Human)|
          Length = 1047

 Score = 33.5 bits (75), Expect = 1.6
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +2

Query: 260  RRPPRPHEGQLHERRNADKC*SYPTGARAQSPP-HTVIANWKHILQTSW 403
            R+PP P   +       + C + PT A + SPP  T+ A ++ +L+T+W
Sbjct: 966  RKPPTPGPEKAEAAAGEESCGASPTPATSASPPGPTLKARFRSLLETAW 1014

>P43609:RSC8_YEAST Chromatin structure remodeling complex protein RSC8 - Saccharomyces|
           cerevisiae (Baker's yeast)
          Length = 557

 Score = 32.3 bits (72), Expect = 3.6
 Identities = 16/83 (19%), Positives = 37/83 (44%)
 Frame = +3

Query: 117 EKKKSASAPRTEAEEMVGAPTSSVVNVYPLANYTFGTKEPKMEKDTSVADRLARMKVNYM 296
           + +K    P  ++ E    P ++  N     ++    +E   E+  ++   +A  K+NY 
Sbjct: 3   DTEKDKDVPMVDSHEATEEPPTTSTNT---PSFPHLAQEQAKEESATLGAEVAHKKINYE 59

Query: 297 KEGMRTSVEAILLVQEHNHPHIL 365
           +E  +   +A+  + +  HP I+
Sbjct: 60  QEAQKLEEKALRFLAKQTHPVII 82

>Q40704:MADS3_ORYSJ MADS-box transcription factor 3 - Oryza sativa subsp. japonica|
           (Rice)
          Length = 236

 Score = 32.3 bits (72), Expect = 3.6
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -2

Query: 576 YVEGNKDTSRSQSLASTKQQHTHQPAS*VEMKVSSLQ 466
           Y + N DTS S ++A    QH  Q +S +  ++SSLQ
Sbjct: 69  YKKANSDTSNSGTVAEVNAQHYQQESSKLRQQISSLQ 105

>Q5VYM1:CI131_HUMAN Uncharacterized protein C9orf131 - Homo sapiens (Human)|
          Length = 1065

 Score = 31.6 bits (70), Expect = 6.1
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -3

Query: 836 VSKRRSEWVAERDLGDTISSPLRAHHVELEPRQLLWDGGNYRSIP 702
           V +R++ W  E     ++S+PL   H++LE   L+W     R +P
Sbjct: 660 VEQRKNHWATELPAPSSLSTPLPEPHIDLE---LVWRNVQQREVP 701

>Q8DZ99:RNZ_STRA5 Ribonuclease Z - Streptococcus agalactiae serotype V|
          Length = 309

 Score = 31.2 bits (69), Expect = 8.0
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +3

Query: 582 KPKECKKLFIVHLTEREYFAVPRNLKLLAVPLFELYDNVQRYGPV 716
           KP++ KK+FI H+     F +P  L   A    E   ++  YGPV
Sbjct: 52  KPRKVKKIFITHMHGDHVFGLPGFLSSRAFQANEEQTDLDIYGPV 96

>Q8E4W1:RNZ_STRA3 Ribonuclease Z - Streptococcus agalactiae serotype III|
          Length = 309

 Score = 31.2 bits (69), Expect = 8.0
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +3

Query: 582 KPKECKKLFIVHLTEREYFAVPRNLKLLAVPLFELYDNVQRYGPV 716
           KP++ KK+FI H+     F +P  L   A    E   ++  YGPV
Sbjct: 52  KPRKVKKIFITHMHGDHVFGLPGFLSSRAFQANEEQTDLDIYGPV 96


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 172,860,534
Number of extensions: 3726491
Number of successful extensions: 9698
Number of sequences better than 10.0: 13
Number of HSP's gapped: 9686
Number of HSP's successfully gapped: 13
Length of query: 369
Length of database: 100,686,439
Length adjustment: 115
Effective length of query: 254
Effective length of database: 69,142,514
Effective search space: 17562198556
Effective search space used: 17562198556
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)