ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf91h22 |
|---|---|
| Clone Library Name | barley_pub |
>P54433:YRKF_BACSU UPF0033 protein yrkF - Bacillus subtilis| Length = 185 Score = 42.7 bits (99), Expect = 0.003 Identities = 24/117 (20%), Positives = 52/117 (44%) Frame = +2 Query: 251 KRLVAEEGYTVLDVRDRRQYERAHVRASAHVPLYIENEDNDIGTIIKRQAHNNFAGLFYG 430 +++ ++E +LDVR+ +YE+AH+ H+PL G + KR Sbjct: 97 QKVDSDESLNILDVREIEEYEKAHIPGVVHIPL---------GEVEKR------------ 135 Query: 431 LSFTKLNRDFTKTVRSKFSPESKLLVVCQEGLRSTAAADALEREGFQNLACITSGLQ 601 ++ + ++ ++C G RS AA ++++GF+ + + G++ Sbjct: 136 --------------ANELNENDEIYIICHSGRRSEMAARTMKKQGFKKVINVVPGMR 178
>Q83DV5:GLPE_COXBU Thiosulfate sulfurtransferase glpE - Coxiella burnetii| Length = 107 Score = 37.7 bits (86), Expect = 0.083 Identities = 30/122 (24%), Positives = 43/122 (35%) Frame = +2 Query: 245 EAKRLVAEEGYTVLDVRDRRQYERAHVRASAHVPLYIENEDNDIGTIIKRQAHNNFAGLF 424 EA LV + + DVRD+ YE H+ + H Sbjct: 10 EAWELVKKRDIVIADVRDQDSYEEEHIANALH---------------------------- 41 Query: 425 YGLSFTKLNRDFTKTVRSKFSPESKLLVVCQEGLRSTAAADALEREGFQNLACITSGLQT 604 LS KL K E +LV C G+ S + A L +GF+ + + G +T Sbjct: 42 --LSMAKLQE-----YSEKADKEKPVLVYCYHGISSQSVAQHLVEQGFKEVYSLIGGFET 94 Query: 605 LK 610 K Sbjct: 95 WK 96
>Q39129:STR16_ARATH Thiosulfate sulfurtransferase - Arabidopsis thaliana (Mouse-ear| cress) Length = 120 Score = 37.0 bits (84), Expect = 0.14 Identities = 29/108 (26%), Positives = 40/108 (37%) Frame = +2 Query: 272 GYTVLDVRDRRQYERAHVRASAHVPLYIENEDNDIGTIIKRQAHNNFAGLFYGLSFTKLN 451 G+ LDVR ++ + H + +VP Y+ G S N Sbjct: 23 GHRYLDVRTPEEFSQGHACGAINVP-YMNR----------------------GASGMSKN 59 Query: 452 RDFTKTVRSKFSPESKLLVVCQEGLRSTAAADALEREGFQNLACITSG 595 DF + V S F ++V CQ G RS A L GF + I G Sbjct: 60 PDFLEQVSSHFGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGG 107
>Q10215:YAY7_SCHPO Uncharacterized protein C4H3.07c - Schizosaccharomyces pombe| (Fission yeast) Length = 171 Score = 34.7 bits (78), Expect = 0.70 Identities = 27/115 (23%), Positives = 54/115 (46%), Gaps = 1/115 (0%) Frame = +2 Query: 248 AKRLVAEEGYTVLDVRDRRQYERAHVRASAHVPLYIENEDNDIGTIIKRQAHNNFAGLFY 427 +KR ++ ++DVR+ ++++ + S ++P +G I + ++ Sbjct: 67 SKRPTGDKSTVLIDVREPDEFKQGAIETSYNLP---------VGKIEEAMKLSD------ 111 Query: 428 GLSFTKLNRDFTKTVR-SKFSPESKLLVVCQEGLRSTAAADALEREGFQNLACIT 589 +F+KT SK E ++V C+ G RST A+D L + G++N+ T Sbjct: 112 --------EEFSKTYGFSKPVFEDNVVVYCRSGRRSTTASDILTKLGYKNIGNYT 158
>Q2GEE8:Y255_NEOSM UPF0176 protein NSE_0255 - Neorickettsia sennetsu (strain Miyayama)| Length = 281 Score = 34.7 bits (78), Expect = 0.70 Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 14/97 (14%) Frame = +2 Query: 350 YIENED-------NDIGTIIKRQAHNNFAGLF-YGLSFTKLN-RDFTKTVRS-----KFS 487 Y+E ED D+ TI R + G F Y + +N RDF + VR S Sbjct: 114 YVEPEDWSSLIAREDVKTIDTRNLYETKLGRFKYSIDPETINFRDFQEWVRKWIEKDNVS 173 Query: 488 PESKLLVVCQEGLRSTAAADALEREGFQNLACITSGL 598 E K+ + C G+R + ++R GF+N+ + G+ Sbjct: 174 MEQKIAMYCTGGVRCEKSTAYMKRIGFKNVYQLKGGI 210
>P27626:DIN1_RAPSA Senescence-associated protein DIN1 - Raphanus sativus (Radish)| Length = 183 Score = 33.9 bits (76), Expect = 1.2 Identities = 28/114 (24%), Positives = 42/114 (36%) Frame = +2 Query: 254 RLVAEEGYTVLDVRDRRQYERAHVRASAHVPLYIENEDNDIGTIIKRQAHNNFAGLFYGL 433 R +A+ GY LDVR ++ H + +VP G Sbjct: 80 RELAQAGYKHLDVRTPDEFSIGHPSRAINVPYMYR----------------------VGS 117 Query: 434 SFTKLNRDFTKTVRSKFSPESKLLVVCQEGLRSTAAADALEREGFQNLACITSG 595 K N F + V S F ++++ C+ G RS A+ L GF + I G Sbjct: 118 GMVK-NPSFLRQVSSHFRKHDEIIIGCESGERSLMASTELLTAGFTGVTDIAGG 170
>A1SRN6:SELU_PSYIN tRNA 2-selenouridine synthase - Psychromonas ingrahamii (strain 37)| Length = 365 Score = 33.5 bits (75), Expect = 1.6 Identities = 25/120 (20%), Positives = 52/120 (43%) Frame = +2 Query: 281 VLDVRDRRQYERAHVRASAHVPLYIENEDNDIGTIIKRQAHNNFAGLFYGLSFTKLNRDF 460 ++D+R ++ + S ++PL +NE +GT K++ L + L + + Sbjct: 22 LIDLRAPVEFAQGAFPESCNLPLMTDNEREQVGTCYKKEGQAAAITLGHQLVASDIQNRI 81 Query: 461 TKTVRSKFSPESKLLVVCQEGLRSTAAADALEREGFQNLACITSGLQTLKPGTFETVGEA 640 K + K + L + GLRS +A L+ G ++ + G + L+ + +A Sbjct: 82 RKWAQFKEENPTAWLYCFRGGLRSRLSAQFLKDHGV-DINIVPGGYKALRRYLINVIDQA 140
>O02799:STAT2_PIG Signal transducer and activator of transcription 2 - Sus scrofa| (Pig) Length = 864 Score = 32.7 bits (73), Expect = 2.7 Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 5/58 (8%) Frame = +2 Query: 476 SKFSPESKLLVVCQEGLRSTAAADALER-----EGFQNLACITSGLQTLKPGTFETVG 634 SKF+ ++LLV QEG S A +++R +GF+ +TS +TL P ++ G Sbjct: 338 SKFTVRTRLLVRLQEGNESLTAEVSIDRNPPKSQGFRKFNILTSNRKTLTPEKGQSQG 395
>A1S1Z4:SELU_SHEAM tRNA 2-selenouridine synthase - Shewanella amazonensis (strain ATCC| BAA-1098 / SB2B) Length = 367 Score = 32.7 bits (73), Expect = 2.7 Identities = 28/140 (20%), Positives = 60/140 (42%), Gaps = 1/140 (0%) Frame = +2 Query: 269 EGYTVLDVRDRRQYERAHVRASAHVPLYIENEDNDIGTIIKRQAHNNFAGLFYGLSFTKL 448 +G+ ++DVR ++ + + ++PL ++E +GT K L + L K+ Sbjct: 17 KGHPIMDVRAPIEFSKGAFPNAVNLPLMTDSERQKVGTCYKEHGQEAAIELGHQLVAGKV 76 Query: 449 NRDFTKTVRSKFSPESKLLVVC-QEGLRSTAAADALEREGFQNLACITSGLQTLKPGTFE 625 + ++ FS + C + GLRS L+ G ++ I G + ++ + Sbjct: 77 KANRVDAWKAFFSEHPDGFLYCFRGGLRSRITQSWLKEVGL-DIPFIEGGYKAMRQFLID 135 Query: 626 TVGEAELQNAGKAGLVTIQG 685 + A GK+ ++ + G Sbjct: 136 EIDTA----PGKSEMLILSG 151
>Q3AJ48:Y1635_SYNSC UPF0176 protein Syncc9605_1635 - Synechococcus sp. (strain CC9605)| Length = 327 Score = 32.3 bits (72), Expect = 3.5 Identities = 36/130 (27%), Positives = 54/130 (41%), Gaps = 15/130 (11%) Frame = +2 Query: 317 AHVRASAHVPLYIENE-------DNDIGTIIKRQAHNNFAGLFYGL--SFTKLNRDFTKT 469 A V S V Y+E E D D I R ++ G F G T+ RDF + Sbjct: 120 ASVDPSTSVGTYVEAEHWNALVDDPDTLVIDTRNSYETAIGTFEGAIDPSTESFRDFPQW 179 Query: 470 VRSKFSP------ESKLLVVCQEGLRSTAAADALEREGFQNLACITSGLQTLKPGTFETV 631 S P ++ + C G+R A+ L+++GF + + G+ LK E V Sbjct: 180 AESTLRPLIEQKSSKRIAMFCTGGIRCEKASSYLQQQGFGEVHHLRGGI--LK--YLEQV 235 Query: 632 GEAELQNAGK 661 EAE + G+ Sbjct: 236 PEAESRWQGE 245
>Q0I0D0:SELU_SHESR tRNA 2-selenouridine synthase - Shewanella sp. (strain MR-7)| Length = 369 Score = 32.0 bits (71), Expect = 4.6 Identities = 22/99 (22%), Positives = 42/99 (42%), Gaps = 1/99 (1%) Frame = +2 Query: 272 GYTVLDVRDRRQYERAHVRASAHVPLYIENEDNDIGTIIKRQAHNNFAGLFYGLSFTKLN 451 G ++D+R +++R +S ++PL ++ E +GT K Q L + L + Sbjct: 18 GQPLIDLRAPIEFDRGAFPSSVNLPLMVDKEREKVGTCYKEQGQQAAIALGHSLVHGVVK 77 Query: 452 RDFTKTVRSKFSPESKLLVVC-QEGLRSTAAADALEREG 565 + + S + + C + GLRS L+ G Sbjct: 78 QQRIDAWLNFLSAHPQAYLYCFRGGLRSQLTQQWLQEAG 116
>Q7VNZ0:GLPE_HAEDU Thiosulfate sulfurtransferase glpE - Haemophilus ducreyi| Length = 110 Score = 32.0 bits (71), Expect = 4.6 Identities = 13/39 (33%), Positives = 22/39 (56%) Frame = +2 Query: 485 SPESKLLVVCQEGLRSTAAADALEREGFQNLACITSGLQ 601 S E ++VVC G+ S + A L +GF+ + +T G + Sbjct: 57 SDEQAVIVVCYHGISSRSVAQFLVEQGFETVYSVTGGFE 95
>Q9WVL2:STAT2_MOUSE Signal transducer and activator of transcription 2 - Mus musculus| (Mouse) Length = 923 Score = 31.6 bits (70), Expect = 5.9 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 4/60 (6%) Frame = +2 Query: 446 LNRDFTKTVRSKFSPESKLLVVCQEGLRSTAAADALERE----GFQNLACITSGLQTLKP 613 L+R +KF+ ++LLV QEG S A +++R GF+ +TS +TL P Sbjct: 328 LHRPLILKTGNKFTVRTRLLVRLQEGSESLKAEVSVDRNSDLPGFRKFNILTSNQKTLTP 387
>Q0HNW2:SELU_SHESM tRNA 2-selenouridine synthase - Shewanella sp. (strain MR-4)| Length = 384 Score = 31.6 bits (70), Expect = 5.9 Identities = 22/99 (22%), Positives = 42/99 (42%), Gaps = 1/99 (1%) Frame = +2 Query: 272 GYTVLDVRDRRQYERAHVRASAHVPLYIENEDNDIGTIIKRQAHNNFAGLFYGLSFTKLN 451 G ++D+R +++R +S ++PL ++ E +GT K Q L + L + Sbjct: 18 GKPLIDLRAPIEFDRGAFPSSVNLPLMVDKEREKVGTCYKEQGQQAAIALGHSLVHGVVK 77 Query: 452 RDFTKTVRSKFSPESKLLVVC-QEGLRSTAAADALEREG 565 + + S + + C + GLRS L+ G Sbjct: 78 QQRIDAWLNFLSAHPQAYLYCFRGGLRSQLTQQWLQEAG 116
>A0KRK0:SELU_SHESA tRNA 2-selenouridine synthase - Shewanella sp. (strain ANA-3)| Length = 365 Score = 31.6 bits (70), Expect = 5.9 Identities = 22/99 (22%), Positives = 42/99 (42%), Gaps = 1/99 (1%) Frame = +2 Query: 272 GYTVLDVRDRRQYERAHVRASAHVPLYIENEDNDIGTIIKRQAHNNFAGLFYGLSFTKLN 451 G ++D+R +++R +S ++PL ++ E +GT K Q L + L + Sbjct: 18 GQPLIDLRAPIEFDRGAFPSSVNLPLMVDKEREKVGTCYKAQGQQAAIALGHSLVHGVVK 77 Query: 452 RDFTKTVRSKFSPESKLLVVC-QEGLRSTAAADALEREG 565 + + S + + C + GLRS L+ G Sbjct: 78 QQRIDAWLNFLSANPEAYLYCFRGGLRSQLTQQWLQEAG 116
>A3Q958:SELU_SHELP tRNA 2-selenouridine synthase - Shewanella loihica (strain BAA-1088| / PV-4) Length = 372 Score = 31.6 bits (70), Expect = 5.9 Identities = 28/137 (20%), Positives = 57/137 (41%), Gaps = 1/137 (0%) Frame = +2 Query: 233 VDGDEAKRLVAEEGYTVLDVRDRRQYERAHVRASAHVPLYIENEDNDIGTIIKRQAHNNF 412 + E R++A G+ ++DVR ++ + AS++ PL ++E +GT K + Sbjct: 10 IPASEYGRILAS-GHPIMDVRAPIEFTKGAFPASSNHPLMRDDERQQVGTCYKEHGQDAA 68 Query: 413 AGLFYGLSFTKLNRDFTKTVRSKFSPESKLLVVC-QEGLRSTAAADALEREGFQNLACIT 589 L + L + + + + C + GLRS L G +++ I Sbjct: 69 IALGHSLVCGAVKQQRVDAWLAYLDAHPDAYLYCFRGGLRSQLTQQWLAEAG-RDVPYIQ 127 Query: 590 SGLQTLKPGTFETVGEA 640 G + ++ +T+ A Sbjct: 128 GGYKAMRQYLIDTIDRA 144
>Q15QB4:OSTA_PSEA6 LPS-assembly protein precursor - Pseudoalteromonas atlantica| (strain T6c / BAA-1087) Length = 759 Score = 31.6 bits (70), Expect = 5.9 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%) Frame = +2 Query: 347 LYIENED-NDIGTIIKRQAHNNFAGLFYGLSFTKLNR 454 LY ED +DIG + N+FAGLF G FT L+R Sbjct: 507 LYTSYEDQSDIGLYDTTRLFNDFAGLFRGQEFTGLDR 543
>P0AG27:YIBN_ECOLI Uncharacterized protein yibN - Escherichia coli| Length = 143 Score = 31.2 bits (69), Expect = 7.8 Identities = 16/51 (31%), Positives = 30/51 (58%) Frame = +2 Query: 245 EAKRLVAEEGYTVLDVRDRRQYERAHVRASAHVPLYIENEDNDIGTIIKRQ 397 EA RL+ +E V+D+R R + + H+ S ++ L E + N++G + K + Sbjct: 44 EATRLINKEDAVVVDLRQRDDFRKGHIAGSINL-LPSEIKANNVGELEKHK 93
>P0AG28:YIBN_ECOL6 Uncharacterized protein yibN - Escherichia coli O6| Length = 143 Score = 31.2 bits (69), Expect = 7.8 Identities = 16/51 (31%), Positives = 30/51 (58%) Frame = +2 Query: 245 EAKRLVAEEGYTVLDVRDRRQYERAHVRASAHVPLYIENEDNDIGTIIKRQ 397 EA RL+ +E V+D+R R + + H+ S ++ L E + N++G + K + Sbjct: 44 EATRLINKEDAVVVDLRQRDDFRKGHIAGSINL-LPSEIKANNVGELEKHK 93
>P0AG29:YIBN_ECO57 Uncharacterized protein yibN - Escherichia coli O157:H7| Length = 143 Score = 31.2 bits (69), Expect = 7.8 Identities = 16/51 (31%), Positives = 30/51 (58%) Frame = +2 Query: 245 EAKRLVAEEGYTVLDVRDRRQYERAHVRASAHVPLYIENEDNDIGTIIKRQ 397 EA RL+ +E V+D+R R + + H+ S ++ L E + N++G + K + Sbjct: 44 EATRLINKEDAVVVDLRQRDDFRKGHIAGSINL-LPSEIKANNVGELEKHK 93
>P52630:STAT2_HUMAN Signal transducer and activator of transcription 2 - Homo sapiens| (Human) Length = 851 Score = 31.2 bits (69), Expect = 7.8 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 5/58 (8%) Frame = +2 Query: 476 SKFSPESKLLVVCQEGLRSTAAADALER-----EGFQNLACITSGLQTLKPGTFETVG 634 SKF+ ++LLV QEG S +++R +GF+ +TS +TL P ++ G Sbjct: 338 SKFTVRTRLLVRLQEGNESLTVEVSIDRNPPQLQGFRKFNILTSNQKTLTPEKGQSQG 395
>Q88QT9:GLPE_PSEPK Thiosulfate sulfurtransferase glpE - Pseudomonas putida (strain| KT2440) Length = 110 Score = 31.2 bits (69), Expect = 7.8 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 5/54 (9%) Frame = +2 Query: 242 DEAKRLVAEEGYTVLDVRDRRQYERAHVRASAH-----VPLYIENEDNDIGTII 388 ++A L +EG V+D+RD + + H+ + H V +I N D D T++ Sbjct: 10 EQALELRKKEGAVVVDIRDPQAFAAGHITGARHLDNHSVADFIRNADLDAPTLV 63 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 150,761,994 Number of extensions: 3025011 Number of successful extensions: 8877 Number of sequences better than 10.0: 22 Number of HSP's gapped: 8873 Number of HSP's successfully gapped: 25 Length of query: 360 Length of database: 100,686,439 Length adjustment: 114 Effective length of query: 246 Effective length of database: 69,416,809 Effective search space: 17076535014 Effective search space used: 17076535014 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
