ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf88j05 |
|---|---|
| Clone Library Name | barley_pub |
>LOC_Os12g43670:12012.t04036:unspliced-genomic erg28 like protein, expressed| Length = 2461 Score = 135 bits (289), Expect(2) = 1e-42 Identities = 55/70 (78%), Positives = 58/70 (82%) Frame = +1 / +2 Query: 151 MTEIHGRTFGVWXXXXXXXXXXXAFNLENKPLYIATFLSFIYALGHFLTEYLIYHTMAAA 330 +TEIHGRTFGVW AFNLEN+PLY+ATFLSFIYALGHFLTEYLIYHTMA A Sbjct: 1223 VTEIHGRTFGVWTLLTCTLCFLCAFNLENRPLYLATFLSFIYALGHFLTEYLIYHTMAVA 1402 Query: 331 NLSTVGFFAG 360 NLSTVGFFAG Sbjct: 1403 NLSTVGFFAG 1432 Score = 62.9 bits (131), Expect(2) = 1e-42 Identities = 25/30 (83%), Positives = 27/30 (90%) Frame = +1 / +3 Query: 352 FAGTSIVWMLLQWNSHGDSRGSHAVKQS*V 441 + GTSIVWMLLQWNSHG SRGS +VKQS*V Sbjct: 1977 YLGTSIVWMLLQWNSHGKSRGSQSVKQS*V 2066 Score = 130 bits (279), Expect(3) = 2e-42 Identities = 60/75 (80%), Positives = 65/75 (86%) Frame = -3 / -2 Query: 362 VPAKKPTVLRFAAAMV*YIKYSVRK*PRA*MNDRKVAIYRGLFSRLNAHRKHSVQVRSVQ 183 +PAKKPTVLRFA A+V YI+YSVRK*PRA*M DRKVA RGLFSRLNAHRKH VQV+SVQ Sbjct: 1434 LPAKKPTVLRFATAIVWYIRYSVRK*PRA*MKDRKVAR*RGLFSRLNAHRKHRVQVKSVQ 1255 Query: 182 TPKVRP*ISVISVWE 138 TPKVRP ISV + E Sbjct: 1254 TPKVRPCISVTACKE 1210 Score = 56.5 bits (117), Expect(3) = 2e-42 Identities = 23/28 (82%), Positives = 24/28 (85%) Frame = -3 / -1 Query: 440 THDCLTAWEPRESP*EFH*SSIHTIDVP 357 THDCLT EPR+ P EFH*SSIHTIDVP Sbjct: 2065 THDCLTD*EPRDFPCEFH*SSIHTIDVP 1982 Score = 31.3 bits (62), Expect(3) = 2e-42 Identities = 12/13 (92%), Positives = 13/13 (100%) Frame = -3 / -2 Query: 155 VISVWEKTATRSA 117 V+SVWEKTATRSA Sbjct: 219 VLSVWEKTATRSA 181 Score = 116 bits (248), Expect(2) = 7e-34 Identities = 44/67 (65%), Positives = 51/67 (76%) Frame = +3 / +1 Query: 159 NSWSYFWGLDTPDLHTVFSVRIQPGKQASVYSHLPVIHLCSWSLSHGVLDISYHGCSKS* 338 N+WS+FWGLDT DL++V SV IQPGKQ S+ H PV+HLCSWS H V DI Y+GC KS Sbjct: 1231 NTWSHFWGLDTFDLYSVLSVCIQPGKQTSLSGHFPVLHLCSWSFPHRVPDIPYYGCGKSE 1410 Query: 339 HSWLLCR 359 H WLL R Sbjct: 1411 HCWLLRR 1431 Score = 51.9 bits (107), Expect(2) = 7e-34 Identities = 19/35 (54%), Positives = 27/35 (77%) Frame = +3 / +2 Query: 339 HSWLLCRNINCMDAASVELSWGFAWFPCCQAVVSG 443 +S+ L R+I+CMDAAS+E +W +WF C AV+SG Sbjct: 1964 NSFCLLRDIDCMDAASMEFTWEISWFSIC*AVMSG 2068 Score = 120 bits (257), Expect(2) = 1e-33 Identities = 48/70 (68%), Positives = 56/70 (80%) Frame = -2 / -1 Query: 360 SCKEANCAKICCSHGMIYQVLREKVTKSIDE*QEGGYIQRLVFQVECAQKTQCAGQECPD 181 +C+EAN A+IC SH M+YQVL E++TKSIDE QE G I+R VFQVEC QK Q GQ+CPD Sbjct: 1432 TCEEANSAQICHSHSMVYQVLGEEMTKSIDEGQESGQIERSVFQVECTQKAQSTGQKCPD 1253 Query: 180 PKSTTMNFSH 151 PKS TM FSH Sbjct: 1252 PKSATMYFSH 1223 Score = 46.9 bits (96), Expect(2) = 1e-33 Identities = 18/27 (66%), Positives = 21/27 (77%) Frame = -2 / -3 Query: 441 HSRLLDSMGTTRIPMRVPLKQHPYN*C 361 HS LL+ + TTR PM +PLKQHPYN C Sbjct: 2066 HS*LLNRLRTTRFPM*IPLKQHPYNRC 1986 Score = 101 bits (216), Expect(2) = 5e-25 Identities = 46/70 (65%), Positives = 51/70 (72%) Frame = -1 / -3 Query: 361 FLQRSQLC*DLLQPWYDISSTP*ESDQEHR*MTGRWLYTEACFPG*MRTENTVCRSGVSR 182 +L+RSQ C DL QP Y IS T * +DQEHR* TG+W E CFPG*M TE+T RS VSR Sbjct: 1433 YLRRSQQCSDLPQP*YGISGTR*GNDQEHR*RTGKWPDREVCFPG*MHTESTEYRSKVSR 1254 Query: 181 PQKYDHEFQS 152 PQK DH FQS Sbjct: 1253 PQKCDHVFQS 1224 Score = 36.8 bits (74), Expect(2) = 5e-25 Identities = 18/32 (56%), Positives = 21/32 (65%) Frame = -1 / -2 Query: 445 MPLTTA*QHGNHANPHESSTEAASIQLMFLQR 350 +PL TA*Q NH H +S EAASIQ M L + Sbjct: 2070 LPLMTA*QIENHEISHVNSIEAASIQSMSLSK 1975 Score = 89.0 bits (188), Expect(2) = 4e-23 Identities = 39/56 (69%), Positives = 40/56 (71%) Frame = +2 / +3 Query: 155 LKFMVVLLGSGHS*PAHCVFCAHSTWKTSLCI*PPSCHSSMLLVTFSRST*YIIPW 322 LK+MV LLGSGH *P C FC HSTWKT L I P SC SSMLLV S ST*Y I W Sbjct: 1227 LKYMVALLGSGHF*PVLCAFCVHSTWKTDLSIWPLSCPSSMLLVISSPST*YTILW 1394 Score = 43.2 bits (88), Expect(2) = 4e-23 Identities = 17/27 (62%), Positives = 19/27 (70%) Frame = +2 / +1 Query: 362 HQLYGCCFSGTLMGIRVVPMLSSSREW 442 H+LYGCCF+G MG VV L SS EW Sbjct: 1987 HRLYGCCFNGIHMGNLVVLNLLSSHEW 2067
>LOC_Os04g06770:12004.t00552:unspliced-genomic argonaute-like protein, putative, expressed| Length = 7698 Score = 32.2 bits (64), Expect(2) = 0.14 Identities = 12/23 (52%), Positives = 13/23 (56%) Frame = -2 / +2 Query: 363 CSCKEANCAKICCSHGMIYQVLR 295 CSC + C CCS G I QV R Sbjct: 7013 CSCSDLLCPSCCCSGGHIPQVRR 7081 Score = 28.1 bits (55), Expect(2) = 0.14 Identities = 9/21 (42%), Positives = 13/21 (61%) Frame = -1 / +3 Query: 535 EPTQCNCKKN*RENVREAPSS 473 +P +CNC + R +RE P S Sbjct: 2913 DPYECNCSGHKRSRIRELPRS 2975
>LOC_Os02g26270:12002.t02321:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 3467 Score = 36.3 bits (73), Expect = 0.26 Identities = 17/51 (33%), Positives = 22/51 (43%) Frame = -1 / +3 Query: 748 GYMTRVHENIRFTYNTGWITKINKCVQKIQTRRCSFSFFHDPRCSLPKKKC 596 G R H +R I++C + + RRCS S H RCS P C Sbjct: 135 GRPQRAHGGVRLGVAGTSSKSIHRCTTRCRRRRCSVSRSHRSRCSSPAGCC 287
>LOC_Os03g14380:12003.t01227:unspliced-genomic autophagy protein 9, putative, expressed| Length = 7524 Score = 30.4 bits (60), Expect(2) = 0.29 Identities = 11/27 (40%), Positives = 15/27 (55%) Frame = +3 / +1 Query: 528 VGSHIHSPFICGNLKFMSCDKLTHFFF 608 V +HIH + GN + CD L F+F Sbjct: 934 VFTHIHFVVLAGNCWYAKCDSLNSFWF 1014 Score = 23.1 bits (44), Expect(2) = 0.29 Identities = 6/13 (46%), Positives = 10/13 (76%) Frame = +1 / +2 Query: 508 FSYSCIVLVHTFI 546 F ++C+ LVH F+ Sbjct: 806 FRFTCVKLVHNFV 844
>LOC_Os07g18120:12007.t01671:unspliced-genomic abscisic-aldehyde oxidase, putative, expressed| Length = 13421 Score = 35.9 bits (72), Expect = 0.36 Identities = 15/47 (31%), Positives = 26/47 (55%) Frame = -2 / +3 Query: 531 QHNATVRKIKEKTSGRLLLASSILPLVRICHSRLLDSMGTTRIPMRV 391 +H RK++E +G++L AS +L +R+ ++ GTT RV Sbjct: 8412 EHAIRARKVEEYLTGKILSASVVLEAIRLLRETIVPVEGTTHPEYRV 8552
>LOC_Os07g18154:12007.t01674:unspliced-genomic aldehyde oxidase 1, putative, expressed| Length = 12088 Score = 35.4 bits (71), Expect = 0.50 Identities = 15/47 (31%), Positives = 26/47 (55%) Frame = -2 / +2 Query: 531 QHNATVRKIKEKTSGRLLLASSILPLVRICHSRLLDSMGTTRIPMRV 391 +H RK++E +G++L AS +L +R+ ++ GTT RV Sbjct: 9953 KHAIRARKVEEYLTGKILSASVVLEAIRLLRETIVPVEGTTHPEYRV 10093
>LOC_Os12g24980:12012.t02221:unspliced-genomic hypothetical protein| Length = 4459 Score = 33.6 bits (67), Expect = 1.8 Identities = 14/42 (33%), Positives = 25/42 (59%) Frame = +2 / +3 Query: 485 LPDVFSLIFLTVALCWFTHSFSIHLWKPEIYEL*QTNTFFFW 610 LPD F L+++T+ L ++ + SI L +I+ + Q+ FW Sbjct: 2535 LPDWFLLVYITILLYYYQPTASISLSTLDIWPIAQSPMAIFW 2660
>LOC_Os10g21660:12010.t01650:unspliced-genomic FAD binding protein, putative, expressed| Length = 10014 Score = 32.2 bits (64), Expect(2) = 1.9 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = -2 / -1 Query: 453 VRICHSRLLDSMGTTRIPMRVPLKQHPYN 367 +R CHSRL S+ TTR P + YN Sbjct: 414 IRRCHSRLAASLATTRAPENSAQNPNAYN 328 Score = 24.4 bits (47), Expect(2) = 1.9 Identities = 9/35 (25%), Positives = 20/35 (57%) Frame = -2 / -2 Query: 648 VVFLSFMTHVALSQKKNVLVCHSS*ISGFHR*MEN 544 + + + + LS N+ +CH++ + G +*ME+ Sbjct: 7916 IYLVQYRISLGLSPHYNI*ICHTTTLRGQFQ*MES 7812
>LOC_Os07g32761:12007.t02958:unspliced-genomic expressed protein| Length = 1878 Score = 29.0 bits (57), Expect(2) = 1.9 Identities = 13/30 (43%), Positives = 17/30 (56%) Frame = +3 / +3 Query: 357 RNINCMDAASVELSWGFAWFPCCQAVVSGI 446 R +C D ASV L WG A P ++SG+ Sbjct: 1740 R*FSCRDGASVLLCWGSAVTPNNLGLISGL 1829 Score = 25.4 bits (49), Expect(2) = 1.9 Identities = 8/20 (40%), Positives = 12/20 (60%) Frame = +3 / +3 Query: 270 HLCSWSLSHGVLDISYHGCS 329 +LC+W +SH + YH S Sbjct: 435 YLCTWRMSHKQCTMVYHESS 494
>LOC_Os05g43960:12005.t03885:unspliced-genomic no apical meristem protein, expressed| Length = 1634 Score = 33.1 bits (66), Expect = 2.4 Identities = 11/31 (35%), Positives = 19/31 (61%) Frame = -1 / +1 Query: 682 NKCVQKIQTRRCSFSFFHDPRCSLPKKKCVS 590 ++C+ TRRC+ + RC+ PK++C S Sbjct: 1249 DRCITSAATRRCTCTRRSGRRCTSPKRRCSS 1341
>LOC_Os10g13550:12010.t01084:unspliced-genomic calcium ion binding protein, putative, expressed| Length = 4060 Score = 27.2 bits (53), Expect(2) = 4.3 Identities = 11/27 (40%), Positives = 13/27 (48%) Frame = -2 / +2 Query: 210 TQCAGQECPDPKSTTMNFSHLCLGEDG 130 T C+ P T +FSH LGE G Sbjct: 923 TVCSSSRAPTIVETVSSFSHFILGE*G 1003 Score = 22.1 bits (42), Expect(2) = 4.3 Identities = 5/6 (83%), Positives = 6/6 (100%) Frame = -1 / +2 Query: 64 ICCCRP 47 +CCCRP Sbjct: 1049 VCCCRP 1066
>LOC_Os12g23550:12012.t02085:unspliced-genomic expressed protein| Length = 1638 Score = 32.2 bits (64), Expect = 4.6 Identities = 15/54 (27%), Positives = 27/54 (50%) Frame = -1 / +2 Query: 736 RVHENIRFTYNTGWITKINKCVQKIQTRRCSFSFFHDPRCSLPKKKCVSLSQLI 575 R + IR TYN WI + + ++ + + S ++ S PKKK L +++ Sbjct: 1079 RRNARIRDTYNGKWINPVARASDRVVAQNKTGSCSNNGSKSRPKKKLKKLEEIV 1240
>LOC_Os02g58230:12002.t05394:unspliced-genomic C2 domain containing protein, expressed| Length = 5162 Score = 27.2 bits (53), Expect(2) = 4.7 Identities = 8/17 (47%), Positives = 13/17 (76%) Frame = +3 / +1 Query: 243 SVYSHLPVIHLCSWSLS 293 ++ HLPVIH+ WS++ Sbjct: 1246 NICRHLPVIHIPKWSIT 1296 Score = 27.2 bits (53), Expect(2) = 4.7 Identities = 11/27 (40%), Positives = 13/27 (48%) Frame = +2 / +3 Query: 494 VFSLIFLTVALCWFTHSFSIHLWKPEI 574 VF L FL V CW S HL+ + Sbjct: 2388 VFVLCFLFVCSCWVVVSLLFHLFSVSV 2468
>LOC_Os04g32050:12004.t02884:unspliced-genomic transposon protein, putative, unclassified, expressed| Length = 4576 Score = 28.1 bits (55), Expect(2) = 5.6 Identities = 9/19 (47%), Positives = 12/19 (63%) Frame = +3 / +1 Query: 264 VIHLCSWSLSHGVLDISYH 320 VIHLC W + G +S+H Sbjct: 1072 VIHLCGWYIFRGKF*VSHH 1128 Score = 25.8 bits (50), Expect(2) = 5.6 Identities = 7/17 (41%), Positives = 9/17 (52%) Frame = +3 / +1 Query: 363 INCMDAASVELSWGFAW 413 +NC +SWGF W Sbjct: 2662 VNCSTLLGAIISWGFLW 2712
>LOC_Os01g56910:12001.t05101:unspliced-genomic expressed protein| Length = 8924 Score = 31.8 bits (63), Expect = 6.3 Identities = 12/23 (52%), Positives = 17/23 (73%) Frame = +3 / +2 Query: 648 HLRVCIF*THLLILVIHPVLYVN 716 HL + + +H LIL +HP+LYVN Sbjct: 8273 HLGLDMIHSHCLILDLHPILYVN 8341
>LOC_Os01g41530:12001.t03674:unspliced-genomic ribosomal RNA apurinic site specific lyase, putative, expressed| Length = 2246 Score = 31.8 bits (63), Expect = 6.3 Identities = 9/22 (40%), Positives = 15/22 (68%) Frame = +2 / -1 Query: 593 NTFFFWERATWVMKERKTTPAC 658 + + +W +ATWVM+ +T P C Sbjct: 671 SAYSWW*KATWVMRAERTGPGC 606
>LOC_Os01g73530:12001.t06633:unspliced-genomic PXA1, putative, expressed| Length = 11264 Score = 29.0 bits (57), Expect(2) = 6.7 Identities = 13/28 (46%), Positives = 15/28 (53%) Frame = +3 / -1 Query: 543 HSPFICGNLKFMSCDKLTHFFFGREQRG 626 HS G L F C K+ HF F RE+ G Sbjct: 3257 HSFLKLGVLLFNHCHKMFHFLF*RERAG 3174 Score = 25.8 bits (50), Expect(2) = 6.7 Identities = 9/15 (60%), Positives = 11/15 (73%) Frame = +1 / -2 Query: 487 PGRFLFNFSYSCIVL 531 P R L NFS SC++L Sbjct: 7495 PARSLVNFSTSCVIL 7451
>LOC_Os02g50530:12002.t04637:unspliced-genomic retrotransposon protein, putative, Ty1-copia subclass| Length = 3626 Score = 27.6 bits (54), Expect(2) = 8.3 Identities = 8/17 (47%), Positives = 13/17 (76%) Frame = +2 / -1 Query: 395 LMGIRVVPMLSSSREWH 445 L+G +++P L SS +WH Sbjct: 1964 LLGNQIIPQLESSYQWH 1914 Score = 25.4 bits (49), Expect(2) = 8.3 Identities = 7/16 (43%), Positives = 12/16 (75%) Frame = +1 / -1 Query: 505 NFSYSCIVLVHTFILH 552 NF + CI+LV + ++H Sbjct: 317 NFCFRCILLVRSLVMH 270
>LOC_Os07g27930:12007.t02485:unspliced-genomic DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide,| putative, expressed Length = 3521 Score = 31.3 bits (62), Expect = 8.7 Identities = 11/32 (34%), Positives = 20/32 (62%) Frame = +2 / +1 Query: 515 TVALCWFTHSFSIHLWKPEIYEL*QTNTFFFW 610 +++L W T + + L ++EL* T+ FFF+ Sbjct: 409 SLSLAWITRGYDVFLGDGWVFEL*LTHRFFFF 504
>LOC_Os03g14500:12003.t01239:unspliced-genomic expressed protein| Length = 1888 Score = 31.3 bits (62), Expect = 8.7 Identities = 16/50 (32%), Positives = 26/50 (52%) Frame = +1 / -3 Query: 277 ALGHFLTEYLIYHTMAAANLSTVGFFAGTSIVWMLLQWNSHGDSRGSHAV 426 AL ++ + ++ +A + S VG F+G+ W L + GD RG AV Sbjct: 236 ALANYTKDNSVWLRLAGSVASQVGVFSGSEGRWCLCLPCAGGDRRGDGAV 87
>LOC_Os01g01770:12001.t00073:unspliced-genomic RNA exonuclease 4, putative| Length = 1119 Score = 31.3 bits (62), Expect = 8.7 Identities = 14/37 (37%), Positives = 18/37 (48%) Frame = -1 / +1 Query: 688 KINKCVQKIQTRRCSFSFFHDPRCSLPKKKCVSLSQL 578 + NK ++ R S HDPRC + K C SL L Sbjct: 169 EFNKKEHLVEHMRTSLHSAHDPRCGVCGKHCRSLDAL 279 Database: tigr.seq.out Posted date: Jul 20, 2007 8:58 AM Number of letters in database: 166,841,660 Number of sequences in database: 56,278 Lambda K H 0.318 0.134 0.401 Matrix: BLOSUM62 Number of Sequences: 56278 Number of Hits to DB: 334,281,370 Number of extensions: 5783505 Number of successful extensions: 21441 Number of sequences better than 10.0: 21 Length of query: 267 Length of database: 55,613,886 Length adjustment: 49 Effective length of query: 218 Effective length of database: 52,856,264 Effective search space: 11522665552 Effective search space used: 11522665552 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits)
