Clone Name | FLbaf88j05 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_001073882.1| Oryza sativa (japonica cultivar-group) Os12g0633200 (Os12g0633200) mRNA, complete cds Length = 699 Score = 299 bits (151), Expect = 8e-78 Identities = 283/327 (86%) Strand = Plus / Plus Query: 116 gggcgctccgcgtcgccgtcttctcccagacagagatgactgaaattcatggtcgtactt 175 |||||||||| || |||||||||||||| || || ||||||||||| |||||||| |||| Sbjct: 180 gggcgctccgtgttgccgtcttctcccaaactgacatgactgaaatacatggtcgcactt 239 Query: 176 ttggggtctggacactcctgacctgcacactgtgttttctgtgcgcattcaacctggaaa 235 |||||||||||||||| ||||||| || ||||| |||||||| |||||||||||||||| Sbjct: 240 ttggggtctggacacttttgacctgtactctgtgctttctgtgtgcattcaacctggaaa 299 Query: 236 acaagcctctgtatatagccaccttcctgtcattcatctatgctcttggtcactttctca 295 ||| ||||| ||| | ||||| |||||||| |||||||||||||||||||| || |||| Sbjct: 300 acagacctctctatctggccactttcctgtccttcatctatgctcttggtcatttcctca 359 Query: 296 cggagtacttgatatatcataccatggctgcagcaaatcttagcacagttggcttctttg 355 | |||||| ||||||| ||||| ||||||| |||||||| ||||| ||||||||||| | Sbjct: 360 ccgagtacctgatataccatactatggctgtggcaaatctgagcactgttggcttcttcg 419 Query: 356 caggaacatcaattgtatggatgctgcttcagtggaactctcatggggattcgcgtggtt 415 |||| ||||| |||||||||||||||||||| ||||| || |||||| | || ||||||| Sbjct: 420 cagggacatcgattgtatggatgctgcttcaatggaattcacatgggaaatctcgtggtt 479 Query: 416 cccatgctgtcaagcagtcgtgagtgg 442 | || |||| |||||||| ||||||| Sbjct: 480 ctcaatctgttaagcagtcatgagtgg 506
>dbj|AK062615.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-105-B02, full insert sequence Length = 699 Score = 299 bits (151), Expect = 8e-78 Identities = 283/327 (86%) Strand = Plus / Plus Query: 116 gggcgctccgcgtcgccgtcttctcccagacagagatgactgaaattcatggtcgtactt 175 |||||||||| || |||||||||||||| || || ||||||||||| |||||||| |||| Sbjct: 180 gggcgctccgtgttgccgtcttctcccaaactgacatgactgaaatacatggtcgcactt 239 Query: 176 ttggggtctggacactcctgacctgcacactgtgttttctgtgcgcattcaacctggaaa 235 |||||||||||||||| ||||||| || ||||| |||||||| |||||||||||||||| Sbjct: 240 ttggggtctggacacttttgacctgtactctgtgctttctgtgtgcattcaacctggaaa 299 Query: 236 acaagcctctgtatatagccaccttcctgtcattcatctatgctcttggtcactttctca 295 ||| ||||| ||| | ||||| |||||||| |||||||||||||||||||| || |||| Sbjct: 300 acagacctctctatctggccactttcctgtccttcatctatgctcttggtcatttcctca 359 Query: 296 cggagtacttgatatatcataccatggctgcagcaaatcttagcacagttggcttctttg 355 | |||||| ||||||| ||||| ||||||| |||||||| ||||| ||||||||||| | Sbjct: 360 ccgagtacctgatataccatactatggctgtggcaaatctgagcactgttggcttcttcg 419 Query: 356 caggaacatcaattgtatggatgctgcttcagtggaactctcatggggattcgcgtggtt 415 |||| ||||| |||||||||||||||||||| ||||| || |||||| | || ||||||| Sbjct: 420 cagggacatcgattgtatggatgctgcttcaatggaattcacatgggaaatctcgtggtt 479 Query: 416 cccatgctgtcaagcagtcgtgagtgg 442 | || |||| |||||||| ||||||| Sbjct: 480 ctcaatctgttaagcagtcatgagtgg 506
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12 Length = 27566993 Score = 206 bits (104), Expect = 9e-50 Identities = 182/208 (87%) Strand = Plus / Minus Query: 152 tgactgaaattcatggtcgtacttttggggtctggacactcctgacctgcacactgtgtt 211 |||||||||| |||||||| |||||||||||||||||||| ||||||| || ||||| | Sbjct: 27169619 tgactgaaatacatggtcgcacttttggggtctggacacttttgacctgtactctgtgct 27169560 Query: 212 ttctgtgcgcattcaacctggaaaacaagcctctgtatatagccaccttcctgtcattca 271 ||||||| ||||||||||||||||||| ||||| ||| | ||||| |||||||| |||| Sbjct: 27169559 ttctgtgtgcattcaacctggaaaacagacctctctatctggccactttcctgtccttca 27169500 Query: 272 tctatgctcttggtcactttctcacggagtacttgatatatcataccatggctgcagcaa 331 |||||||||||||||| || ||||| |||||| ||||||| ||||| ||||||| |||| Sbjct: 27169499 tctatgctcttggtcatttcctcaccgagtacctgatataccatactatggctgtggcaa 27169440 Query: 332 atcttagcacagttggcttctttgcagg 359 |||| ||||| ||||||||||| ||||| Sbjct: 27169439 atctgagcactgttggcttcttcgcagg 27169412 Score = 67.9 bits (34), Expect = 5e-08 Identities = 70/82 (85%) Strand = Plus / Minus Query: 361 acatcaattgtatggatgctgcttcagtggaactctcatggggattcgcgtggttcccat 420 ||||| |||||||||||||||||||| ||||| || |||||| | || |||||||| || Sbjct: 27168857 acatcgattgtatggatgctgcttcaatggaattcacatgggaaatctcgtggttctcaa 27168798 Query: 421 gctgtcaagcagtcgtgagtgg 442 |||| |||||||| ||||||| Sbjct: 27168797 tctgttaagcagtcatgagtgg 27168776 Score = 48.1 bits (24), Expect = 0.049 Identities = 24/24 (100%) Strand = Plus / Plus Query: 54 cagcagcagatcgcggaggaggag 77 |||||||||||||||||||||||| Sbjct: 4802901 cagcagcagatcgcggaggaggag 4802924
>emb|AL731887.5|CNS08C8R Oryza sativa chromosome 12, . BAC OJ1559_C07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 145816 Score = 206 bits (104), Expect = 9e-50 Identities = 182/208 (87%) Strand = Plus / Minus Query: 152 tgactgaaattcatggtcgtacttttggggtctggacactcctgacctgcacactgtgtt 211 |||||||||| |||||||| |||||||||||||||||||| ||||||| || ||||| | Sbjct: 108518 tgactgaaatacatggtcgcacttttggggtctggacacttttgacctgtactctgtgct 108459 Query: 212 ttctgtgcgcattcaacctggaaaacaagcctctgtatatagccaccttcctgtcattca 271 ||||||| ||||||||||||||||||| ||||| ||| | ||||| |||||||| |||| Sbjct: 108458 ttctgtgtgcattcaacctggaaaacagacctctctatctggccactttcctgtccttca 108399 Query: 272 tctatgctcttggtcactttctcacggagtacttgatatatcataccatggctgcagcaa 331 |||||||||||||||| || ||||| |||||| ||||||| ||||| ||||||| |||| Sbjct: 108398 tctatgctcttggtcatttcctcaccgagtacctgatataccatactatggctgtggcaa 108339 Query: 332 atcttagcacagttggcttctttgcagg 359 |||| ||||| ||||||||||| ||||| Sbjct: 108338 atctgagcactgttggcttcttcgcagg 108311 Score = 67.9 bits (34), Expect = 5e-08 Identities = 70/82 (85%) Strand = Plus / Minus Query: 361 acatcaattgtatggatgctgcttcagtggaactctcatggggattcgcgtggttcccat 420 ||||| |||||||||||||||||||| ||||| || |||||| | || |||||||| || Sbjct: 107756 acatcgattgtatggatgctgcttcaatggaattcacatgggaaatctcgtggttctcaa 107697 Query: 421 gctgtcaagcagtcgtgagtgg 442 |||| |||||||| ||||||| Sbjct: 107696 tctgttaagcagtcatgagtgg 107675
>dbj|AK227737.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-31-J15 Length = 675 Score = 65.9 bits (33), Expect = 2e-07 Identities = 75/89 (84%) Strand = Plus / Plus Query: 151 atgactgaaattcatggtcgtacttttggggtctggacactcctgacctgcacactgtgt 210 |||| |||| ||||||| ||||| || || || ||||||||| |||||||||| || || Sbjct: 205 atgagtgaagttcatggacgtacattcggagtatggacactcttgacctgcactctctgc 264 Query: 211 tttctgtgcgcattcaacctggaaaacaa 239 ||||| || ||||||||||| |||||||| Sbjct: 265 tttctttgtgcattcaacctcgaaaacaa 293 Score = 46.1 bits (23), Expect = 0.19 Identities = 32/35 (91%) Strand = Plus / Plus Query: 346 ggcttctttgcaggaacatcaattgtatggatgct 380 |||||||||||||| ||||| ||||| |||||||| Sbjct: 400 ggcttctttgcaggtacatcgattgtgtggatgct 434
>ref|NM_100877.1| Arabidopsis thaliana unknown protein (AT1G10030) mRNA, complete cds Length = 707 Score = 65.9 bits (33), Expect = 2e-07 Identities = 75/89 (84%) Strand = Plus / Plus Query: 151 atgactgaaattcatggtcgtacttttggggtctggacactcctgacctgcacactgtgt 210 |||| |||| ||||||| ||||| || || || ||||||||| |||||||||| || || Sbjct: 226 atgagtgaagttcatggacgtacattcggagtatggacactcttgacctgcactctctgc 285 Query: 211 tttctgtgcgcattcaacctggaaaacaa 239 ||||| || ||||||||||| |||||||| Sbjct: 286 tttctttgtgcattcaacctcgaaaacaa 314 Score = 46.1 bits (23), Expect = 0.19 Identities = 32/35 (91%) Strand = Plus / Plus Query: 346 ggcttctttgcaggaacatcaattgtatggatgct 380 |||||||||||||| ||||| ||||| |||||||| Sbjct: 421 ggcttctttgcaggtacatcgattgtgtggatgct 455
>gb|BT008773.1| Arabidopsis thaliana At1g10030 mRNA, complete cds Length = 390 Score = 65.9 bits (33), Expect = 2e-07 Identities = 75/89 (84%) Strand = Plus / Plus Query: 151 atgactgaaattcatggtcgtacttttggggtctggacactcctgacctgcacactgtgt 210 |||| |||| ||||||| ||||| || || || ||||||||| |||||||||| || || Sbjct: 115 atgagtgaagttcatggacgtacattcggagtatggacactcttgacctgcactctctgc 174 Query: 211 tttctgtgcgcattcaacctggaaaacaa 239 ||||| || ||||||||||| |||||||| Sbjct: 175 tttctttgtgcattcaacctcgaaaacaa 203 Score = 46.1 bits (23), Expect = 0.19 Identities = 32/35 (91%) Strand = Plus / Plus Query: 346 ggcttctttgcaggaacatcaattgtatggatgct 380 |||||||||||||| ||||| ||||| |||||||| Sbjct: 310 ggcttctttgcaggtacatcgattgtgtggatgct 344
>gb|AC004122.1| Arabidopsis thaliana chromosome I BAC T27I1 genomic sequence, complete sequence Length = 67878 Score = 63.9 bits (32), Expect = 8e-07 Identities = 71/84 (84%) Strand = Plus / Plus Query: 156 tgaaattcatggtcgtacttttggggtctggacactcctgacctgcacactgtgttttct 215 |||| ||||||| ||||| || || || ||||||||| |||||||||| || || ||||| Sbjct: 20572 tgaagttcatggacgtacattcggagtatggacactcttgacctgcactctctgctttct 20631 Query: 216 gtgcgcattcaacctggaaaacaa 239 || ||||||||||| |||||||| Sbjct: 20632 ttgtgcattcaacctcgaaaacaa 20655
>gb|AY085328.1| Arabidopsis thaliana clone 145854 mRNA, complete sequence Length = 707 Score = 58.0 bits (29), Expect = 5e-05 Identities = 74/89 (83%) Strand = Plus / Plus Query: 151 atgactgaaattcatggtcgtacttttggggtctggacactcctgacctgcacactgtgt 210 |||| |||| ||||||| ||||| || || || | ||||||| |||||||||| || || Sbjct: 226 atgagtgaagttcatggacgtacattcggagtattgacactcttgacctgcactctctgc 285 Query: 211 tttctgtgcgcattcaacctggaaaacaa 239 ||||| || ||||||||||| |||||||| Sbjct: 286 tttctttgtgcattcaacctcgaaaacaa 314 Score = 46.1 bits (23), Expect = 0.19 Identities = 32/35 (91%) Strand = Plus / Plus Query: 346 ggcttctttgcaggaacatcaattgtatggatgct 380 |||||||||||||| ||||| ||||| |||||||| Sbjct: 421 ggcttctttgcaggtacatcgattgtgtggatgct 455
>dbj|AP006135.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT30O01, TM0233, complete sequence Length = 126062 Score = 52.0 bits (26), Expect = 0.003 Identities = 77/94 (81%) Strand = Plus / Plus Query: 152 tgactgaaattcatggtcgtacttttggggtctggacactcctgacctgcacactgtgtt 211 |||||||||||||||| || || ||||| |||||||| |||||||||| ||||| | Sbjct: 74111 tgactgaaattcatggacgcacatttggaacttggacactgttgacctgcaccctgtgct 74170 Query: 212 ttctgtgcgcattcaacctggaaaacaagcctct 245 ||| || |||||||| || ||||| |||||||| Sbjct: 74171 atctatgtgcattcaatcttgaaaataagcctct 74204
>gb|AC157757.25| Medicago truncatula clone mth2-16j22, complete sequence Length = 139738 Score = 48.1 bits (24), Expect = 0.049 Identities = 57/68 (83%) Strand = Plus / Plus Query: 220 gcattcaacctggaaaacaagcctctgtatatagccaccttcctgtcattcatctatgct 279 ||||||||||| || ||||||||||| || |||| || || ||||||||||||| || Sbjct: 106123 gcattcaaccttgataacaagcctctttacctagcaacttttttgtcattcatctacgcg 106182 Query: 280 cttggtca 287 |||||||| Sbjct: 106183 cttggtca 106190 Score = 42.1 bits (21), Expect = 3.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 356 caggaacatcaattgtatggatgct 380 ||||||||||||| ||||||||||| Sbjct: 106929 caggaacatcaatagtatggatgct 106953
>gb|AC068042.5| Homo sapiens BAC clone RP11-535B12 from 2, complete sequence Length = 172617 Score = 48.1 bits (24), Expect = 0.049 Identities = 24/24 (100%) Strand = Plus / Minus Query: 641 aaaactacacctgcgtgtttgtat 664 |||||||||||||||||||||||| Sbjct: 63839 aaaactacacctgcgtgtttgtat 63816
>gb|AC135800.24| Medicago truncatula clone mth2-14g8, complete sequence Length = 125467 Score = 48.1 bits (24), Expect = 0.049 Identities = 57/68 (83%) Strand = Plus / Minus Query: 220 gcattcaacctggaaaacaagcctctgtatatagccaccttcctgtcattcatctatgct 279 ||||||||||| || ||||||||||| || |||| || || ||||||||||||| || Sbjct: 33543 gcattcaaccttgataacaagcctctttacctagcaacttttttgtcattcatctacgcg 33484 Query: 280 cttggtca 287 |||||||| Sbjct: 33483 cttggtca 33476 Score = 42.1 bits (21), Expect = 3.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 356 caggaacatcaattgtatggatgct 380 ||||||||||||| ||||||||||| Sbjct: 32737 caggaacatcaatagtatggatgct 32713
>emb|AL713946.3|CNS07YPP Oryza sativa chromosome 12, . BAC OJ1005_B07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 161762 Score = 48.1 bits (24), Expect = 0.049 Identities = 24/24 (100%) Strand = Plus / Minus Query: 54 cagcagcagatcgcggaggaggag 77 |||||||||||||||||||||||| Sbjct: 44230 cagcagcagatcgcggaggaggag 44207
>gb|DQ245462.1| Zea mays clone 15784 mRNA sequence Length = 741 Score = 46.1 bits (23), Expect = 0.19 Identities = 41/47 (87%) Strand = Plus / Plus Query: 355 gcaggaacatcaattgtatggatgctgcttcagtggaactctcatgg 401 ||||| ||||| || || |||||||||||||| |||||||| ||||| Sbjct: 403 gcagggacatccatggtttggatgctgcttcaatggaactcccatgg 449
>ref|NM_001070559.1| Oryza sativa (japonica cultivar-group) Os10g0105400 (Os10g0105400) mRNA, complete cds Length = 3857 Score = 46.1 bits (23), Expect = 0.19 Identities = 23/23 (100%) Strand = Plus / Minus Query: 60 cagatcgcggaggaggaggagga 82 ||||||||||||||||||||||| Sbjct: 218 cagatcgcggaggaggaggagga 196
>gb|AC069324.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0071K19, complete sequence Length = 174752 Score = 46.1 bits (23), Expect = 0.19 Identities = 23/23 (100%) Strand = Plus / Plus Query: 60 cagatcgcggaggaggaggagga 82 ||||||||||||||||||||||| Sbjct: 159897 cagatcgcggaggaggaggagga 159919
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence Length = 2331000 Score = 46.1 bits (23), Expect = 0.19 Identities = 23/23 (100%) Strand = Plus / Plus Query: 60 cagatcgcggaggaggaggagga 82 ||||||||||||||||||||||| Sbjct: 394839 cagatcgcggaggaggaggagga 394861
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10 Length = 22685906 Score = 46.1 bits (23), Expect = 0.19 Identities = 23/23 (100%) Strand = Plus / Plus Query: 60 cagatcgcggaggaggaggagga 82 ||||||||||||||||||||||| Sbjct: 394839 cagatcgcggaggaggaggagga 394861
>emb|BX072539.13| Zebrafish DNA sequence from clone CH211-286O24 in linkage group 6, complete sequence Length = 78217 Score = 46.1 bits (23), Expect = 0.19 Identities = 23/23 (100%) Strand = Plus / Minus Query: 536 acacattcattctccattcatct 558 ||||||||||||||||||||||| Sbjct: 67178 acacattcattctccattcatct 67156
>dbj|AK109229.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-156-F01, full insert sequence Length = 530 Score = 46.1 bits (23), Expect = 0.19 Identities = 23/23 (100%) Strand = Plus / Minus Query: 60 cagatcgcggaggaggaggagga 82 ||||||||||||||||||||||| Sbjct: 218 cagatcgcggaggaggaggagga 196
>dbj|AK103627.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033133O13, full insert sequence Length = 3884 Score = 46.1 bits (23), Expect = 0.19 Identities = 23/23 (100%) Strand = Plus / Minus Query: 60 cagatcgcggaggaggaggagga 82 ||||||||||||||||||||||| Sbjct: 219 cagatcgcggaggaggaggagga 197
>dbj|AK064283.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-105-G07, full insert sequence Length = 1685 Score = 46.1 bits (23), Expect = 0.19 Identities = 23/23 (100%) Strand = Plus / Minus Query: 60 cagatcgcggaggaggaggagga 82 ||||||||||||||||||||||| Sbjct: 220 cagatcgcggaggaggaggagga 198
>ref|XM_001087325.1| PREDICTED: Macaca mulatta general transcription factor IIF, polypeptide 1, 74kDa (GTF2F1), mRNA Length = 2425 Score = 44.1 bits (22), Expect = 0.76 Identities = 25/26 (96%) Strand = Plus / Plus Query: 33 cacgcccagcgaagagggcggcagca 58 ||||||||||| |||||||||||||| Sbjct: 1342 cacgcccagcgcagagggcggcagca 1367
>gb|AC146522.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0039A07 map near 50283S, complete sequence Length = 158158 Score = 44.1 bits (22), Expect = 0.76 Identities = 22/22 (100%) Strand = Plus / Minus Query: 353 ttgcaggaacatcaattgtatg 374 |||||||||||||||||||||| Sbjct: 70859 ttgcaggaacatcaattgtatg 70838
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11 Length = 28386948 Score = 44.1 bits (22), Expect = 0.76 Identities = 22/22 (100%) Strand = Plus / Minus Query: 353 ttgcaggaacatcaattgtatg 374 |||||||||||||||||||||| Sbjct: 14325247 ttgcaggaacatcaattgtatg 14325226
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 44.1 bits (22), Expect = 0.76 Identities = 22/22 (100%) Strand = Plus / Plus Query: 353 ttgcaggaacatcaattgtatg 374 |||||||||||||||||||||| Sbjct: 15096923 ttgcaggaacatcaattgtatg 15096944
>gb|AC091733.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0048F08, from chromosome 3, complete sequence Length = 155790 Score = 44.1 bits (22), Expect = 0.76 Identities = 22/22 (100%) Strand = Plus / Minus Query: 353 ttgcaggaacatcaattgtatg 374 |||||||||||||||||||||| Sbjct: 52384 ttgcaggaacatcaattgtatg 52363
>gb|AC010967.3| Homo sapiens BAC clone RP11-7H13 from 2, complete sequence Length = 197328 Score = 44.1 bits (22), Expect = 0.76 Identities = 22/22 (100%) Strand = Plus / Minus Query: 622 gtgggtcatgaaagaaagaaaa 643 |||||||||||||||||||||| Sbjct: 101855 gtgggtcatgaaagaaagaaaa 101834
>emb|AL136298.5|CNS01DW2 Human chromosome 14 DNA sequence BAC R-134E15 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 181532 Score = 44.1 bits (22), Expect = 0.76 Identities = 25/26 (96%) Strand = Plus / Minus Query: 270 catctatgctcttggtcactttctca 295 |||||||||||||||| ||||||||| Sbjct: 88067 catctatgctcttggttactttctca 88042
>emb|CT831560.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN039M18, full insert sequence Length = 1774 Score = 42.1 bits (21), Expect = 3.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 214 ctgtgcgcattcaacctggaaaaca 238 |||||||||||||||||||| |||| Sbjct: 1362 ctgtgcgcattcaacctggagaaca 1386
>ref|XM_001210391.1| Aspergillus terreus NIH2624 predicted protein (ATEG_00305) mRNA, complete cds Length = 921 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 62 gatcgcggaggaggaggagga 82 ||||||||||||||||||||| Sbjct: 609 gatcgcggaggaggaggagga 629
>ref|NM_001070156.1| Oryza sativa (japonica cultivar-group) Os09g0508000 (Os09g0508000) mRNA, complete cds Length = 1773 Score = 42.1 bits (21), Expect = 3.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 58 agcagatcgcggaggaggaggagga 82 ||||||||| ||||||||||||||| Sbjct: 154 agcagatcgaggaggaggaggagga 130
>ref|NM_001070154.1| Oryza sativa (japonica cultivar-group) Os09g0508100 (Os09g0508100) mRNA, complete cds Length = 417 Score = 42.1 bits (21), Expect = 3.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 58 agcagatcgcggaggaggaggagga 82 ||||||||| ||||||||||||||| Sbjct: 278 agcagatcgaggaggaggaggagga 302
>ref|NM_001065212.1| Oryza sativa (japonica cultivar-group) Os07g0101400 (Os07g0101400) mRNA, complete cds Length = 1709 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 68 ggaggaggaggaggatttgga 88 ||||||||||||||||||||| Sbjct: 135 ggaggaggaggaggatttgga 155
>ref|NM_001063593.1| Oryza sativa (japonica cultivar-group) Os06g0197300 (Os06g0197300) mRNA, complete cds Length = 1005 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 67 cggaggaggaggaggatttgg 87 ||||||||||||||||||||| Sbjct: 312 cggaggaggaggaggatttgg 292
>ref|NM_001063591.1| Oryza sativa (japonica cultivar-group) Os06g0197000 (Os06g0197000) mRNA, complete cds Length = 1005 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 67 cggaggaggaggaggatttgg 87 ||||||||||||||||||||| Sbjct: 312 cggaggaggaggaggatttgg 292
>ref|NM_001048764.1| Oryza sativa (japonica cultivar-group) Os01g0183800 (Os01g0183800) mRNA, complete cds Length = 1603 Score = 42.1 bits (21), Expect = 3.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 214 ctgtgcgcattcaacctggaaaaca 238 |||||||||||||||||||| |||| Sbjct: 1325 ctgtgcgcattcaacctggagaaca 1349
>ref|NM_001048447.1| Oryza sativa (japonica cultivar-group) Os01g0128400 (Os01g0128400) mRNA, complete cds Length = 2243 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 63 atcgcggaggaggaggaggat 83 ||||||||||||||||||||| Sbjct: 111 atcgcggaggaggaggaggat 91
>gb|AC121851.4| Mus musculus chromosome 8 clone RP24-92F5, complete sequence Length = 184603 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 540 attcattctccattcatctgt 560 ||||||||||||||||||||| Sbjct: 75677 attcattctccattcatctgt 75697
>gb|AC108759.2| Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone OSJNBa0072P02, complete sequence Length = 157488 Score = 42.1 bits (21), Expect = 3.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 58 agcagatcgcggaggaggaggagga 82 ||||||||| ||||||||||||||| Sbjct: 115895 agcagatcgaggaggaggaggagga 115871
>ref|XM_866482.1| PREDICTED: Bos taurus similar to phosphoinositide-3-kinase, regulatory subunit 5, p101 (LOC614838), mRNA Length = 2755 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 68 ggaggaggaggaggatttgga 88 ||||||||||||||||||||| Sbjct: 987 ggaggaggaggaggatttgga 1007
>gb|AC120388.11| Mus musculus chromosome 9, clone RP24-300P2, complete sequence Length = 157596 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 495 ttttctctttaatttttctta 515 ||||||||||||||||||||| Sbjct: 86252 ttttctctttaatttttctta 86232
>gb|AY314788.1| Tuber borchii enolase (eno-1) gene, promoter region and complete cds Length = 2947 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 494 gttttctctttaatttttctt 514 ||||||||||||||||||||| Sbjct: 713 gttttctctttaatttttctt 733
>gb|AC130531.4| Mus musculus BAC clone RP23-167P1 from chromosome 19, complete sequence Length = 202186 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 500 tctttaatttttcttacagtt 520 ||||||||||||||||||||| Sbjct: 110406 tctttaatttttcttacagtt 110386
>gb|AC124434.3| Mus musculus BAC clone RP24-250K22 from chromosome 8, complete sequence Length = 167741 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 540 attcattctccattcatctgt 560 ||||||||||||||||||||| Sbjct: 3157 attcattctccattcatctgt 3177
>gb|AC122799.4| Mus musculus BAC clone RP23-308K11 from 16, complete sequence Length = 203686 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 767 atattggaaacacttcaatat 787 ||||||||||||||||||||| Sbjct: 96380 atattggaaacacttcaatat 96400
>gb|BC040334.1| Homo sapiens cDNA clone IMAGE:4839037 Length = 4047 Score = 42.1 bits (21), Expect = 3.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 702 gtgttgtatgtaaacctaatatttt 726 ||||| ||||||||||||||||||| Sbjct: 3503 gtgttctatgtaaacctaatatttt 3527
>ref|XM_457440.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0B11440g) partial mRNA Length = 1149 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 494 gttttctctttaatttttctt 514 ||||||||||||||||||||| Sbjct: 532 gttttctctttaatttttctt 512
>gb|AC093877.3| Homo sapiens BAC clone RP11-637G19 from 4, complete sequence Length = 162150 Score = 42.1 bits (21), Expect = 3.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 702 gtgttgtatgtaaacctaatatttt 726 ||||| ||||||||||||||||||| Sbjct: 107104 gtgttctatgtaaacctaatatttt 107080
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9 Length = 22696651 Score = 42.1 bits (21), Expect = 3.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 58 agcagatcgcggaggaggaggagga 82 ||||||||| ||||||||||||||| Sbjct: 19396669 agcagatcgaggaggaggaggagga 19396645
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7 Length = 29644043 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 68 ggaggaggaggaggatttgga 88 ||||||||||||||||||||| Sbjct: 84748 ggaggaggaggaggatttgga 84728
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6 Length = 30731886 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 67 cggaggaggaggaggatttgg 87 ||||||||||||||||||||| Sbjct: 4948469 cggaggaggaggaggatttgg 4948489 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 67 cggaggaggaggaggatttgg 87 ||||||||||||||||||||| Sbjct: 4963589 cggaggaggaggaggatttgg 4963609
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 63 atcgcggaggaggaggaggat 83 ||||||||||||||||||||| Sbjct: 1575486 atcgcggaggaggaggaggat 1575506 Score = 42.1 bits (21), Expect = 3.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 214 ctgtgcgcattcaacctggaaaaca 238 |||||||||||||||||||| |||| Sbjct: 4436549 ctgtgcgcattcaacctggagaaca 4436573
>emb|AL031123.14|HS80N2 Human DNA sequence from clone RP1-80N2 on chromosome 6p24.1-25.3 Contains the gene for MD-1,RP105-associated, part of a putative novel gene and three putative CpG islands, complete sequence Length = 193731 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 633 aagaaagaaaaactacacctg 653 ||||||||||||||||||||| Sbjct: 114436 aagaaagaaaaactacacctg 114456
>dbj|AP002484.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0489A01 Length = 137174 Score = 42.1 bits (21), Expect = 3.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 214 ctgtgcgcattcaacctggaaaaca 238 |||||||||||||||||||| |||| Sbjct: 96631 ctgtgcgcattcaacctggagaaca 96655
>emb|CR382134.1| Debaryomyces hansenii chromosome B of strain CBS767 of Debaryomyces hansenii Length = 1349926 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 494 gttttctctttaatttttctt 514 ||||||||||||||||||||| Sbjct: 883431 gttttctctttaatttttctt 883411
>gb|AF284035.1|AF284035 Melanogrammus aeglefinus vitellogenin A (VtgA) mRNA, complete cds Length = 5189 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 69 gaggaggaggaggatttggag 89 ||||||||||||||||||||| Sbjct: 3407 gaggaggaggaggatttggag 3387
>emb|BX842629.1| Neurospora crassa DNA linkage group I BAC contig B20J13 Length = 126048 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 69 gaggaggaggaggatttggag 89 ||||||||||||||||||||| Sbjct: 16673 gaggaggaggaggatttggag 16693
>gb|AC131947.1| Homo sapiens BAC clone RP11-123I8 from 4, complete sequence Length = 132585 Score = 42.1 bits (21), Expect = 3.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 702 gtgttgtatgtaaacctaatatttt 726 ||||| ||||||||||||||||||| Sbjct: 111957 gtgttctatgtaaacctaatatttt 111933
>dbj|AP002538.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0408F06 Length = 137462 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 63 atcgcggaggaggaggaggat 83 ||||||||||||||||||||| Sbjct: 12717 atcgcggaggaggaggaggat 12737
>dbj|AP006056.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1172G12 Length = 171974 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 67 cggaggaggaggaggatttgg 87 ||||||||||||||||||||| Sbjct: 5703 cggaggaggaggaggatttgg 5723
>dbj|AP003510.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0528E04 Length = 170701 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 67 cggaggaggaggaggatttgg 87 ||||||||||||||||||||| Sbjct: 135952 cggaggaggaggaggatttgg 135972 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 67 cggaggaggaggaggatttgg 87 ||||||||||||||||||||| Sbjct: 151072 cggaggaggaggaggatttgg 151092
>dbj|AP005869.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1026C12 Length = 170240 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 68 ggaggaggaggaggatttgga 88 ||||||||||||||||||||| Sbjct: 84047 ggaggaggaggaggatttgga 84027
>dbj|AB015471.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K9B18 Length = 10085 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 495 ttttctctttaatttttctta 515 ||||||||||||||||||||| Sbjct: 6800 ttttctctttaatttttctta 6780
>ref|XM_960053.1| Neurospora crassa OR74A hypothetical protein (NCU00953.1) partial mRNA Length = 1530 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 69 gaggaggaggaggatttggag 89 ||||||||||||||||||||| Sbjct: 217 gaggaggaggaggatttggag 237
>dbj|AK106385.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-102-E05, full insert sequence Length = 1603 Score = 42.1 bits (21), Expect = 3.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 214 ctgtgcgcattcaacctggaaaaca 238 |||||||||||||||||||| |||| Sbjct: 1325 ctgtgcgcattcaacctggagaaca 1349
>dbj|AK069837.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023031F07, full insert sequence Length = 1712 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 68 ggaggaggaggaggatttgga 88 ||||||||||||||||||||| Sbjct: 137 ggaggaggaggaggatttgga 157
>dbj|AK066539.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013068N24, full insert sequence Length = 1777 Score = 42.1 bits (21), Expect = 3.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 58 agcagatcgcggaggaggaggagga 82 ||||||||| ||||||||||||||| Sbjct: 155 agcagatcgaggaggaggaggagga 131
>emb|BX000484.12| Zebrafish DNA sequence from clone CH211-12E1 in linkage group 2, complete sequence Length = 158932 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 313 cataccatggctgcagcaaat 333 ||||||||||||||||||||| Sbjct: 31363 cataccatggctgcagcaaat 31383
>gb|AY109820.1| Zea mays CL14195_1 mRNA sequence Length = 772 Score = 42.1 bits (21), Expect = 3.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 116 gggcgctccgcgtcgccgtcttctc 140 |||||||||||||||||| |||||| Sbjct: 122 gggcgctccgcgtcgccgacttctc 146
>emb|AL935118.8| Mouse DNA sequence from clone RP23-464I16 on chromosome 2, complete sequence Length = 83723 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 539 cattcattctccattcatctg 559 ||||||||||||||||||||| Sbjct: 68498 cattcattctccattcatctg 68478
>gb|AC005181.1|AC005181 Homo sapiens chromosome 17, clone hRPK.1003_J_3, complete sequence Length = 202763 Score = 42.1 bits (21), Expect = 3.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 702 gtgttgtatgtaaacctaatatttt 726 ||||| ||||||||||||||||||| Sbjct: 11389 gtgttctatgtaaacctaatatttt 11365
>emb|AL513468.9| Mouse DNA sequence from clone RP23-104I6 on chromosome X, complete sequence Length = 211194 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 497 ttctctttaatttttcttaca 517 ||||||||||||||||||||| Sbjct: 159961 ttctctttaatttttcttaca 159941
>gb|AY242242.1| Basidiomycete yeast sp. BG98-12-9-1-2 26S ribosomal RNA gene, partial sequence Length = 626 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 97 cggagaagggcgggaggaagg 117 ||||||||||||||||||||| Sbjct: 472 cggagaagggcgggaggaagg 492 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 165,473,682 Number of extensions: 11696453 Number of successful extensions: 655152 Number of sequences better than 10.0: 75 Number of HSP's gapped: 655147 Number of HSP's successfully gapped: 87 Length of query: 802 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 780 Effective length of database: 18,508,616,841 Effective search space: 14436721135980 Effective search space used: 14436721135980 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)