ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | FLbaf88h05 |
|---|---|
| Clone Library Name | barley_pub |
| No. | Definition | Score (bits) |
E Value |
1 | AK061692:Os08g0567200 | 39 | 0.007 | 2 | AK121075:Os10g0524400 | 36 | 0.073 | 3 | AK108768:Os10g0524400 | 36 | 0.073 | 4 | AK073012:Os10g0524400 | 36 | 0.073 | 5 | AK103574:Os06g0489200 | 35 | 0.16 | 6 | AK121107:Os04g0385700 | 31 | 2.3 | 7 | Os10g0154500:Os10g0154500 | 30 | 3.0 | 8 | Os06g0682700:Os06g0682700 | 30 | 3.1 | 9 | AK073751:Os04g0560300 | 29 | 6.8 | 10 | AY341855:Os01g0665500 | 29 | 8.9 | 11 | AY341844:Os01g0665500 | 29 | 8.9 | 12 | AK121779:Os04g0132500 | 29 | 8.9 | 13 | AK112081:Os04g0132500 | 29 | 8.9 | 14 | AK099935:Os08g0421400 | 29 | 8.9 | 15 | AK073504:Os07g0681600 | 29 | 8.9 |
|---|
>AK061692:Os08g0567200 | Length = 235 Score = 39.3 bits (90), Expect = 0.007 Identities = 30/92 (32%), Positives = 41/92 (44%), Gaps = 9/92 (9%) Frame = +2 Query: 461 MNSSATPFGLPGSSQHAPTNAFPMPQMARHATPNLQPLAMAYTHDF---------KTLPP 613 M+SS P PGSS TN FP+P + P P+AMA T+ + + L Sbjct: 1 MSSSRNPNPPPGSSSSG-TNYFPLPFHLQQQPPQPPPMAMASTYQYQQYQQLQQAQQLFQ 59 Query: 614 TDAHLSTMRALQSTQPPPADQTWINPLQVPAT 709 DA T AL+S + A ++P AT Sbjct: 60 RDAQTITPEALESVKAALATSDVLDPANARAT 91
>AK121075:Os10g0524400 | Length = 1046 Score = 35.8 bits (81), Expect = 0.073 Identities = 29/96 (30%), Positives = 34/96 (35%), Gaps = 6/96 (6%) Frame = +2 Query: 437 PYGQYPYLMNSSATPFGLPGSSQHAPTNAFPMPQMARHATPNL---QPLAMAYTHDFKTL 607 PYGQYPY P Q P +A+ P + H P+ QP Y H L Sbjct: 22 PYGQYPYQYP--------PPQQQPPPPSAYLSPSRSFHGYPSAPPPQPQPQPYAHHSAPL 73 Query: 608 ---PPTDAHLSTMRALQSTQPPPADQTWINPLQVPA 706 PP H A QP P +P PA Sbjct: 74 QPYPPPPQH----HAYPPPQPHPPSPYVYDPYHAPA 105
>AK108768:Os10g0524400 | Length = 521 Score = 35.8 bits (81), Expect = 0.073 Identities = 29/96 (30%), Positives = 34/96 (35%), Gaps = 6/96 (6%) Frame = +2 Query: 437 PYGQYPYLMNSSATPFGLPGSSQHAPTNAFPMPQMARHATPNL---QPLAMAYTHDFKTL 607 PYGQYPY P Q P +A+ P + H P+ QP Y H L Sbjct: 22 PYGQYPYQYP--------PPQQQPPPPSAYLSPSRSFHGYPSAPPPQPQPQPYAHHSAPL 73 Query: 608 ---PPTDAHLSTMRALQSTQPPPADQTWINPLQVPA 706 PP H A QP P +P PA Sbjct: 74 QPYPPPPQH----HAYPPPQPHPPSPYVYDPYHAPA 105
>AK073012:Os10g0524400 | Length = 1046 Score = 35.8 bits (81), Expect = 0.073 Identities = 29/96 (30%), Positives = 34/96 (35%), Gaps = 6/96 (6%) Frame = +2 Query: 437 PYGQYPYLMNSSATPFGLPGSSQHAPTNAFPMPQMARHATPNL---QPLAMAYTHDFKTL 607 PYGQYPY P Q P +A+ P + H P+ QP Y H L Sbjct: 22 PYGQYPYQYP--------PPQQQPPPPSAYLSPSRSFHGYPSAPPPQPQPQPYAHHSAPL 73 Query: 608 ---PPTDAHLSTMRALQSTQPPPADQTWINPLQVPA 706 PP H A QP P +P PA Sbjct: 74 QPYPPPPQH----HAYPPPQPHPPSPYVYDPYHAPA 105
>AK103574:Os06g0489200 | Length = 984 Score = 34.7 bits (78), Expect = 0.16 Identities = 20/85 (23%), Positives = 37/85 (43%) Frame = +2 Query: 56 LRQQAQEFHLDRERASEQYNEFVKKSNDSNKDEGKRLYDLLKRKRQEDARVKLEAATPGP 235 L+ + QE ++ R+ + + S DS+ + R R+ +R K+ + TPG Sbjct: 845 LKYEKQEHRAEKSRSRSSHRQTQSGSLDSDSTSDQH------RSRERRSRHKIRSGTPGS 898 Query: 236 SASGDHSSLNSHTSHSGRPAKKKTS 310 +S +H SHS ++ S Sbjct: 899 DSSIEHHRSKKRKSHSKHRTRRSRS 923
>AK121107:Os04g0385700 | Length = 469 Score = 30.8 bits (68), Expect = 2.3 Identities = 21/79 (26%), Positives = 28/79 (35%) Frame = +2 Query: 431 VMPYGQYPYLMNSSATPFGLPGSSQHAPTNAFPMPQMARHATPNLQPLAMAYTHDFKTLP 610 + P G P + P G+ S APT P P PN P+ P Sbjct: 300 IPPPGTAPSTDGAQNYPPGVTPPSSGAPTQPVPAPVYGTSGAPNAPPMYP---------P 350 Query: 611 PTDAHLSTMRALQSTQPPP 667 P + S ++ QPPP Sbjct: 351 PPYGYASYYPSVTPVQPPP 369
>Os10g0154500:Os10g0154500 | Length = 541 Score = 30.4 bits (67), Expect = 3.0 Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 3/84 (3%) Frame = +3 Query: 615 PTPTCRRCAPSSQLSRLPPTRRGSTRFK---SLLLAYHRRFRNRALLRLHMCS*ASRRLV 785 P P+ R P PP + F S L+A+ RR RAL LH+ A +R Sbjct: 66 PAPSAHRRRPFRHALSPPPPLCAAAAFAYAPSGLVAHRRRQSRRALPLLHLRVCALKRFP 125 Query: 786 MNCVRQATTALRRWALQRTWDRRA 857 ++ + L +R+W R A Sbjct: 126 ISKSTRVNLTLTPSICRRSWSRSA 149
>Os06g0682700:Os06g0682700 | Length = 627 Score = 30.4 bits (67), Expect = 3.1 Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 3/70 (4%) Frame = +2 Query: 491 PGSSQHAPTNAFPMPQMARHATPNLQPLA-MAYTHDFKTLPP--TDAHLSTMRALQSTQP 661 P H P A P+PQ A +A P A Y+H LPP H + A+ S P Sbjct: 24 PQYPHHPPPYAAPLPQYAPYARGMPPPQAQQLYSH----LPPHQQPPHFAA-HAMPSPSP 78 Query: 662 PPADQTWINP 691 PP +++P Sbjct: 79 PPPHPAYMHP 88
>AK073751:Os04g0560300 | Length = 811 Score = 29.3 bits (64), Expect = 6.8 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 5/59 (8%) Frame = +2 Query: 548 HATPNLQPLAMAYT-----HDFKTLPPTDAHLSTMRALQSTQPPPADQTWINPLQVPAT 709 +AT PL MA H+F+T PPTDA S ++ L+ P + +PLQ T Sbjct: 511 YATVAGGPLLMALVAGEAAHNFETTPPTDAVSSVLKILRGIYEPQGIEV-PDPLQSVCT 568
>AY341855:Os01g0665500 | Length = 580 Score = 28.9 bits (63), Expect = 8.9 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 4/42 (9%) Frame = -3 Query: 833 KGPTAE----CCGCLSHAVHD*PSACSRTHVKPEKSSVAEPP 720 +GPT + CC C +H + P SRTH + + PP Sbjct: 59 RGPTCQLDPCCCCCTAHVIPP-PPPVSRTHATRRDAEASVPP 99
>AY341844:Os01g0665500 | Length = 565 Score = 28.9 bits (63), Expect = 8.9 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 4/42 (9%) Frame = -3 Query: 833 KGPTAE----CCGCLSHAVHD*PSACSRTHVKPEKSSVAEPP 720 +GPT + CC C +H + P SRTH + + PP Sbjct: 44 RGPTCQLDPCCCCCTAHVIPP-PPPVSRTHATRRDAEASVPP 84
>AK121779:Os04g0132500 | Length = 1147 Score = 28.9 bits (63), Expect = 8.9 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = +1 Query: 652 NSAASRRPDVDQPASSPCYWLTTGGSA 732 N+ A+R PD ASSPC W G A Sbjct: 45 NTTAARPPDWSPSASSPCKWSHVGCDA 71
>AK112081:Os04g0132500 | Length = 1147 Score = 28.9 bits (63), Expect = 8.9 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = +1 Query: 652 NSAASRRPDVDQPASSPCYWLTTGGSA 732 N+ A+R PD ASSPC W G A Sbjct: 45 NTTAARPPDWSPSASSPCKWSHVGCDA 71
>AK099935:Os08g0421400 | Length = 127 Score = 28.9 bits (63), Expect = 8.9 Identities = 18/44 (40%), Positives = 23/44 (52%) Frame = +2 Query: 557 PNLQPLAMAYTHDFKTLPPTDAHLSTMRALQSTQPPPADQTWIN 688 P+ PLA+A LP T +H S A +S QPPP + W N Sbjct: 11 PHRLPLALALQSPLPLLPAT-SHPSATGASRSQQPPPR-RVWRN 52
>AK073504:Os07g0681600 | Length = 886 Score = 28.9 bits (63), Expect = 8.9 Identities = 20/78 (25%), Positives = 32/78 (41%) Frame = +1 Query: 1093 YRKSE*RFQSFRLSDRQSLCHRVPIRLRFGCSVASHASSSFIMSQVSCAVVCCQRHFILR 1272 Y++S+ F ++ +S HR I SF+ +Q C + C R F+L+ Sbjct: 332 YQRSDFMKSDFYCAEAKSQTHRKAIM------------ESFMAAQKYCLLATCHRKFLLQ 379 Query: 1273 SFKRSRIVLHVNTFCNSC 1326 F R T C +C Sbjct: 380 YFGEDR-----TTDCGNC 392 Database: orf_amino.fa.out Posted date: Jul 26, 2007 11:37 AM Number of letters in database: 15,399,855 Number of sequences in database: 40,041 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 40041 Number of Hits to DB: 40,225,414 Number of extensions: 947177 Number of successful extensions: 3512 Number of sequences better than 10.0: 15 Number of HSP's gapped: 3506 Number of HSP's successfully gapped: 15 Length of query: 455 Length of database: 15,399,855 Length adjustment: 104 Effective length of query: 351 Effective length of database: 11,235,591 Effective search space: 3943692441 Effective search space used: 3943692441 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
