ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf88h05 |
|---|---|
| Clone Library Name | barley_pub |
>Q5KJI2:DHH1_CRYNE ATP-dependent RNA helicase DHH1 - Cryptococcus neoformans| (Filobasidiella neoformans) Length = 625 Score = 41.6 bits (96), Expect = 0.008 Identities = 33/93 (35%), Positives = 38/93 (40%), Gaps = 1/93 (1%) Frame = +2 Query: 437 PYGQYPYLMNSSATPFGLPGSSQHAPTNA-FPMPQMARHATPNLQPLAMAYTHDFKTLPP 613 P + NSS P LP SQ APT A P P + P+ QP A A T +PP Sbjct: 495 PQALFQQQPNSSPAPAPLPSYSQQAPTQAQGPAPVQSPPPAPSTQPQAPAQTPIQGQIPP 554 Query: 614 TDAHLSTMRALQSTQPPPADQTWINPLQVPATG 712 T Q QP A Q P + P TG Sbjct: 555 TQPRAQQQGQQQPGQPGQA-QGQSQPNRRPNTG 586
>Q0U4Z8:VPS27_PHANO Vacuolar protein sorting-associated protein 27 - Phaeosphaeria| nodorum (Septoria nodorum) Length = 720 Score = 34.7 bits (78), Expect = 0.95 Identities = 21/63 (33%), Positives = 24/63 (38%), Gaps = 6/63 (9%) Frame = +2 Query: 527 PMPQMARHATPNLQPLA------MAYTHDFKTLPPTDAHLSTMRALQSTQPPPADQTWIN 688 P PQM HA P PL+ +Y +T PP Q PPP Q W Sbjct: 618 PSPQMYNHAPPQQTPLSPPAYQNPSYPSQQQTAPPPQQQAPP----QQAPPPPQQQQWQQ 673 Query: 689 PLQ 697 P Q Sbjct: 674 PAQ 676
>P57513:DCDA_BUCAI Diaminopimelate decarboxylase - Buchnera aphidicola subsp.| Acyrthosiphon pisum (Acyrthosiphon pisum symbiotic bacterium) Length = 415 Score = 34.7 bits (78), Expect = 0.95 Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 4/70 (5%) Frame = -1 Query: 1177 IVSGWVPGGREI---ADLIAEMTENVIRISDKSVPVHEGSR-CLRVHGASSWGPASWRRV 1010 ++SG+ P EI AD++ E E +++++ +PV+ GS L+ G S G W R+ Sbjct: 84 LLSGFKPSTNEIIFTADILDE--ETLLKVAKYKIPVNAGSLDMLKQLGKISPGHHVWLRI 141 Query: 1009 ARRFGLGRTR 980 RFG G ++ Sbjct: 142 NPRFGYGHSK 151
>Q6S6U0:ICP4_EHV1V Trans-acting transcriptional protein ICP4 - Equine herpesvirus 1| (strain V592) (EHV-1) (Equine abortion virus) Length = 1487 Score = 33.9 bits (76), Expect = 1.6 Identities = 19/53 (35%), Positives = 26/53 (49%) Frame = +2 Query: 131 SNDSNKDEGKRLYDLLKRKRQEDARVKLEAATPGPSASGDHSSLNSHTSHSGR 289 S+DS+ DEG R Q A+ A +PGPS+ GD + + T S R Sbjct: 213 SDDSDSDEGGEEETPRPRHSQNAAKTPSAAGSPGPSSGGDRPAAGAATPKSCR 265
>P17473:ICP4_EHV1K Trans-acting transcriptional protein ICP4 - Equine herpesvirus 1| (strain Kentucky A) (EHV-1) (Equine abortion virus) Length = 1487 Score = 33.9 bits (76), Expect = 1.6 Identities = 19/53 (35%), Positives = 26/53 (49%) Frame = +2 Query: 131 SNDSNKDEGKRLYDLLKRKRQEDARVKLEAATPGPSASGDHSSLNSHTSHSGR 289 S+DS+ DEG R Q A+ A +PGPS+ GD + + T S R Sbjct: 213 SDDSDSDEGGEEETPRPRHSQNAAKTPSAAGSPGPSSGGDRPAAGAATPKSCR 265
>P28925:ICP4_EHV1B Trans-acting transcriptional protein ICP4 - Equine herpesvirus 1| (strain Ab4p) (EHV-1) (Equine abortion virus) Length = 1487 Score = 33.9 bits (76), Expect = 1.6 Identities = 19/53 (35%), Positives = 26/53 (49%) Frame = +2 Query: 131 SNDSNKDEGKRLYDLLKRKRQEDARVKLEAATPGPSASGDHSSLNSHTSHSGR 289 S+DS+ DEG R Q A+ A +PGPS+ GD + + T S R Sbjct: 213 SDDSDSDEGGEEETPRPRHSQNAAKTPSAAGSPGPSSGGDRPAAGAATPKSCR 265
>Q5RAZ4:DHX15_PONPY Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15| - Pongo pygmaeus (Orangutan) Length = 795 Score = 33.9 bits (76), Expect = 1.6 Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 7/88 (7%) Frame = +2 Query: 89 RERASEQYNEFVKKSNDSNKDEGKRLYDLLKRKRQEDARVKLEAATPG-------PSASG 247 ++R ++ E K D +D G R +R+R+++ +L A+T P Sbjct: 25 KDRDRDRDREDRSKDRDRERDRGDR-----EREREKEKEKELRASTNAMLISAGLPPLKA 79 Query: 248 DHSSLNSHTSHSGRPAKKKTSVHDMFAG 331 HS+ ++H++HS S H AG Sbjct: 80 SHSAHSTHSAHSAHSTHSAHSTHAGHAG 107
>O43143:DHX15_HUMAN Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15| - Homo sapiens (Human) Length = 795 Score = 33.1 bits (74), Expect = 2.8 Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 7/88 (7%) Frame = +2 Query: 89 RERASEQYNEFVKKSNDSNKDEGKRLYDLLKRKRQEDARVKLEAATPG-------PSASG 247 ++R ++ E K D +D G R +R+R+++ +L A+T P Sbjct: 25 KDRDRDRDREDRSKDRDRERDRGDR-----EREREKEKEKELRASTNAMLISAGLPPLKA 79 Query: 248 DHSSLNSHTSHSGRPAKKKTSVHDMFAG 331 HS+ ++H++HS S H AG Sbjct: 80 SHSAHSTHSAHSTHSTHSAHSTHAGHAG 107
>P23090:GAG_MLVDU Gag polyprotein - Duplan murine leukemia virus| Length = 529 Score = 32.7 bits (73), Expect = 3.6 Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 7/88 (7%) Frame = +2 Query: 470 SATPFGLPGSSQHAPTNAF-------PMPQMARHATPNLQPLAMAYTHDFKTLPPTDAHL 628 S PF PG S H P+ + P +R PN PL T + LPP Sbjct: 109 STLPFSPPGPSAHPPSRSDLYTALIPSKPPKSRVLPPNGGPLIDLLTENLPNLPPL---- 164 Query: 629 STMRALQSTQPPPADQTWINPLQVPATG 712 + ++ +PPP + NP++ G Sbjct: 165 -SKGPVKKRRPPPPRYSPPNPMESRVRG 191
>O35286:DHX15_MOUSE Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15| - Mus musculus (Mouse) Length = 795 Score = 32.7 bits (73), Expect = 3.6 Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 7/89 (7%) Frame = +2 Query: 86 DRERASEQYNEFVKKSNDSNKDEGKRLYDLLKRKRQEDARVKLEAATPG-------PSAS 244 DRER ++ + K D +D G R +R+R+++ +L A+T P Sbjct: 26 DRERDRDREDR--SKDRDRERDRGDR-----EREREKEKEKELRASTNAMLISAGLPPLK 78 Query: 245 GDHSSLNSHTSHSGRPAKKKTSVHDMFAG 331 HS+ ++H++HS S H G Sbjct: 79 ASHSAHSTHSAHSTHSTHSAHSTHTGHTG 107
>Q58Z64:DHH1_CRYNV ATP-dependent RNA helicase VAD1 - Cryptococcus neoformans var.| grubii (Filobasidiella neoformans var. grubii) Length = 616 Score = 32.7 bits (73), Expect = 3.6 Identities = 30/94 (31%), Positives = 36/94 (38%), Gaps = 2/94 (2%) Frame = +2 Query: 437 PYGQYPYLM-NSSATPFGLPGSSQHAPTNA-FPMPQMARHATPNLQPLAMAYTHDFKTLP 610 P Q P+ NSS P LP Q APT A P + + P QP A A P Sbjct: 487 PQPQVPFQQANSSPAPAPLPSYPQQAPTQAQGPAQMQSPPSEPATQPQASAQIPVQGQTP 546 Query: 611 PTDAHLSTMRALQSTQPPPADQTWINPLQVPATG 712 P Q +QP A+ P + P TG Sbjct: 547 PIQPRAQQQGQQQPSQPGQAEGQ-SQPNRRPNTG 579
>Q8CGB6:TENC1_MOUSE Tensin-like C1 domain-containing phosphatase - Mus musculus (Mouse)| Length = 1400 Score = 32.3 bits (72), Expect = 4.7 Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 3/78 (3%) Frame = +2 Query: 440 YGQYPYLMNSSATPFGLPGSSQHAPTNAFPMPQMARHATPNLQPLAMAY---THDFKTLP 610 YG+ P+ S + G P H+P P + P LQP + Y D + Sbjct: 802 YGRAPHSCGSPSEGRGYPSPGAHSPRAGSVSP----GSPPYLQPRKLGYEISAEDGRDKY 857 Query: 611 PTDAHLSTMRALQSTQPP 664 P HL++ L ST+ P Sbjct: 858 PLSGHLASTGPLASTESP 875
>Q6PB44:PTN23_MOUSE Tyrosine-protein phosphatase non-receptor type 23 - Mus musculus| (Mouse) Length = 1692 Score = 32.3 bits (72), Expect = 4.7 Identities = 15/44 (34%), Positives = 20/44 (45%) Frame = +2 Query: 491 PGSSQHAPTNAFPMPQMARHATPNLQPLAMAYTHDFKTLPPTDA 622 P + P FP+PQ + P QPL + YT+ T P A Sbjct: 898 PNPTPALPQPCFPVPQPVPQSVPQPQPLPVPYTYSIGTKQPLPA 941
>Q9QWF0:CAF1A_MOUSE Chromatin assembly factor 1 subunit A - Mus musculus (Mouse)| Length = 911 Score = 32.0 bits (71), Expect = 6.2 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%) Frame = +2 Query: 59 RQQAQEFHLDRERASEQYNEFVKKSNDSNK-DEGKRLYDLLKRKRQEDARVKLEAA 223 +++A++ L E+ E+ K + K +E KRL + KR R+E+ R+K E A Sbjct: 367 KEKAEKQRLKEEKRKERQEALEAKLEEKRKKEEEKRLREEEKRLREEEKRIKAEKA 422
>Q66J97:R111C_XENLA E3 ubiquitin-protein ligase arkadia-C - Xenopus laevis (African| clawed frog) Length = 967 Score = 31.6 bits (70), Expect = 8.1 Identities = 20/64 (31%), Positives = 24/64 (37%) Frame = +2 Query: 452 PYLMNSSATPFGLPGSSQHAPTNAFPMPQMARHATPNLQPLAMAYTHDFKTLPPTDAHLS 631 P +SA P P S P PM + H P + PL + PP HLS Sbjct: 628 PLHHQTSACPHSNPASQPPPPPPPPPMDYVIAHQVPFISPLPSLTSTHAVPPPPPSHHLS 687 Query: 632 TMRA 643 T A Sbjct: 688 TAAA 691
>O88902:PTN23_RAT Tyrosine-protein phosphatase non-receptor type 23 - Rattus| norvegicus (Rat) Length = 1499 Score = 31.6 bits (70), Expect = 8.1 Identities = 14/38 (36%), Positives = 18/38 (47%) Frame = +2 Query: 491 PGSSQHAPTNAFPMPQMARHATPNLQPLAMAYTHDFKT 604 PG + P FP+PQ + P QPL YT+ T Sbjct: 723 PGPAPAPPQPCFPVPQPVPQSVPQPQPLPTPYTYSIGT 760
>Q10156:LKH1_SCHPO Dual specificity protein kinase lkh1 - Schizosaccharomyces pombe| (Fission yeast) Length = 690 Score = 31.6 bits (70), Expect = 8.1 Identities = 16/53 (30%), Positives = 27/53 (50%) Frame = +2 Query: 1055 PQASTALMHGNGLIGNPNDVFSHFGYQIGNLSATGYPSAYDSAAAWQAMHRPP 1213 PQ+ + NG++ P+DV SH Y + S T Y + ++ + + H PP Sbjct: 90 PQSYDPWLDANGVVPLPHDVASHPSYMV--QSPTSYHACSNNQSPFPHSHHPP 140 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 234,756,985 Number of extensions: 5045196 Number of successful extensions: 16204 Number of sequences better than 10.0: 17 Number of HSP's gapped: 16176 Number of HSP's successfully gapped: 17 Length of query: 455 Length of database: 100,686,439 Length adjustment: 117 Effective length of query: 338 Effective length of database: 68,593,924 Effective search space: 23184746312 Effective search space used: 23184746312 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
