ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf88g07 |
|---|---|
| Clone Library Name | barley_pub |
>Q12000:TMA46_YEAST Translation machinery-associated protein 46 - Saccharomyces| cerevisiae (Baker's yeast) Length = 345 Score = 210 bits (534), Expect = 2e-53 Identities = 106/231 (45%), Positives = 141/231 (61%), Gaps = 6/231 (2%) Frame = +3 Query: 225 TFGLKNKNKSKNVQKYVQSLHQSVQPKPDPXXXXXXXXXXXXXXXXXXLNDLFKVAVSQP 404 TFG+KNKN+S VQKY++ + PK + LF Q Sbjct: 22 TFGMKNKNRSTKVQKYIKQVQSQSDPKKEEMRLKKLEEKKRREAEEAERRALFNPVADQ- 80 Query: 405 KVPVGVDPKSILCEFFKVGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRDGEEEDTMDDW 584 +V GVDPKS++C FK+G C KG KCKFSHDLNV R+ EK D+Y D R +E DTMD+W Sbjct: 81 RVRAGVDPKSMVCALFKLGNCNKGAKCKFSHDLNVGRRMEKKDLYQDTRSEKENDTMDNW 140 Query: 585 DQETLEKVIASKNADYQQNKPTDIVCKHFLDAVEKKQYGWFWVCPNGGTECRYRHALPPG 764 D+E L KVI SK+ + TD VCK+F++AVE +YGWFW+CPNGG +C YRH+LP G Sbjct: 141 DEEKLRKVILSKHGN--PKTTTDKVCKYFIEAVENGKYGWFWICPNGGDKCMYRHSLPEG 198 Query: 765 YVLKSQMKALLEEES----KKVAIEDEIEDQRKKVQTT--TPMTTELFMEW 899 +VLK+ + LE ES K+ +E+ IE +R K+ + TP+T F +W Sbjct: 199 FVLKTNEQKRLERESLEKQPKITLEEFIETERGKLDKSKLTPITIANFAQW 249
>Q9USV4:MEP33_SCHPO mRNA export protein 33 - Schizosaccharomyces pombe (Fission yeast)| Length = 292 Score = 93.6 bits (231), Expect = 2e-18 Identities = 73/261 (27%), Positives = 108/261 (41%), Gaps = 5/261 (1%) Frame = +3 Query: 225 TFGLKNKNKSKNVQKYVQSLHQSVQPKPDPXXXXXXXXXXXXXXXXXXLNDL-FKVAVSQ 401 TFGLKNKN+S VQ ++ + Q+ +VA Sbjct: 29 TFGLKNKNRSTKVQAKIRQIEQNAAASGSKDAKRQEALRKRREEEKRAAEAAKAEVAALF 88 Query: 402 PKVPVGVDPKSILCEFFKVGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRDGEEEDTMDD 581 +P P++ L +V ++ +KID+YSD RD + + ++ Sbjct: 89 NAIPKKQTPQNFLTRKEEV------------------KESQKIDLYSDVRDQQTDLPLEK 130 Query: 582 --WDQETLEKVIASKNADYQQNKPTDIVCKHFLDAVEKKQYGWFWVCPNGGTECRYRHAL 755 W TDIVCK FL+A E +YGW W CPNG C Y+HAL Sbjct: 131 RPWIN-------------------TDIVCKFFLEACETGKYGWLWQCPNGNMTCIYKHAL 171 Query: 756 PPGYVLKSQMKALLEEESKKVAIEDEIEDQRKKV-QTTTPMTTELFMEWXXXXXXXXXXX 932 P GYVL K ++ +++++E IE +R ++ TP+T E F +W Sbjct: 172 PYGYVLSRDKKK--DDTKEEISLEAFIEIERHRLGPNLTPVTEENFKKWSDGRRDRILKQ 229 Query: 933 XXXXXXDRA-KNDRMSGRELF 992 +RA +SGRE F Sbjct: 230 AEERRSNRAVGRSNLSGREYF 250
>Q60764:MKRN3_MOUSE Makorin-3 - Mus musculus (Mouse)| Length = 544 Score = 40.4 bits (93), Expect = 0.021 Identities = 18/43 (41%), Positives = 28/43 (65%) Frame = +3 Query: 390 AVSQPKVPVGVDPKSILCEFFKVGQCQKGFKCKFSHDLNVQRK 518 A S P+ G K ILC ++ GQC++G C++SHDL+ +R+ Sbjct: 81 ARSGPERNSGSWTKQILCRYYLHGQCKEGDNCRYSHDLSGRRR 123
>Q2URI6:YTH1_ASPOR mRNA 3'-end-processing protein yth1 - Aspergillus oryzae| Length = 255 Score = 38.9 bits (89), Expect = 0.061 Identities = 37/146 (25%), Positives = 58/146 (39%), Gaps = 5/146 (3%) Frame = +3 Query: 432 SILCEFFKVGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRDGEEEDTMDDWDQETLEKVI 611 S++C+ F G C+KG KC++ H+ N++R E S R G + D Q E+ Sbjct: 89 SLVCKHFLKGLCKKGLKCEYLHEYNLRRMPE---CQSFSRSGYCPNGDDCLYQHVREQAR 145 Query: 612 ASKNADYQQN-KPTDIVCKHFLDAVEKKQYGWFWVCPNG----GTECRYRHALPPGYVLK 776 Y + P +C QY CP G R+ LP + Sbjct: 146 LPPCEHYDRGFCPLGPLCAKRHVRRRLCQYYLAGFCPEGKGCADAHARWIENLPKPSIRV 205 Query: 777 SQMKALLEEESKKVAIEDEIEDQRKK 854 + + LE E + E E E +R++ Sbjct: 206 EKTEEELERERILIREEQEREKERER 231
>Q99ND9:RWDD1_RAT RWD domain-containing protein 1 - Rattus norvegicus (Rat)| Length = 243 Score = 38.9 bits (89), Expect = 0.061 Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 11/129 (8%) Frame = +3 Query: 780 QMKALLEEESKKVAIEDEIEDQRKKVQTTTPMTTELFMEW--XXXXXXXXXXXXXXXXXD 953 Q+K EEE K+ E E E+ KK+ TP+T E F+ W + Sbjct: 117 QIKTRREEEKKQK--EKEAEEAEKKLFHGTPVTIENFLSWKAKFDAELLEIKKKRMKEEE 174 Query: 954 RAKNDRMSGRELFMADASV------FIDDA-EAYEVYERL--EEPQANQEQGKKSQDEGP 1106 +A +++SG++LF D ++ F++DA EV E L E E G+ D P Sbjct: 175 QAGKNKLSGKQLFETDHNLDTSDIQFLEDAGNNVEVDESLFQEMDDLELEDGEDDPDYNP 234 Query: 1107 SSSTSNGKE 1133 + S+ + Sbjct: 235 VAPGSDSSD 243
>Q9CQK7:RWDD1_MOUSE RWD domain-containing protein 1 - Mus musculus (Mouse)| Length = 243 Score = 38.9 bits (89), Expect = 0.061 Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 11/129 (8%) Frame = +3 Query: 780 QMKALLEEESKKVAIEDEIEDQRKKVQTTTPMTTELFMEW--XXXXXXXXXXXXXXXXXD 953 Q+K EEE K+ E E E+ KK+ TP+T E F+ W + Sbjct: 117 QIKTRREEEKKQK--EKEAEEAEKKLFHGTPVTIENFLSWKAKFDAELLEIKKKRMKEEE 174 Query: 954 RAKNDRMSGRELFMADASV------FIDDA-EAYEVYERL--EEPQANQEQGKKSQDEGP 1106 +A +++SG++LF D ++ F++DA EV E L E E G+ D P Sbjct: 175 QAGKNKLSGKQLFETDHNLDTSDIQFLEDAGNNVEVDESLFQEMDDLELEDGEDDPDYNP 234 Query: 1107 SSSTSNGKE 1133 + S+ + Sbjct: 235 VAPGSDSSD 243
>Q5BGN2:YTH1_EMENI mRNA 3'-end-processing protein yth1 - Emericella nidulans| (Aspergillus nidulans) Length = 254 Score = 38.5 bits (88), Expect = 0.080 Identities = 37/146 (25%), Positives = 57/146 (39%), Gaps = 5/146 (3%) Frame = +3 Query: 432 SILCEFFKVGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRDGEEEDTMDDWDQETLEKVI 611 S++C+ F G C+KG KC++ H+ N++R E S R G + D Q E+ Sbjct: 89 SLVCKHFLKGLCKKGMKCEYLHEYNLRRMPE---CQSFSRSGYCPNGDDCLYQHVREQAR 145 Query: 612 ASKNADYQQN-KPTDIVCKHFLDAVEKKQYGWFWVCPNG----GTECRYRHALPPGYVLK 776 Y Q P +C Y CP G R+ LP + Sbjct: 146 LPPCEHYDQGFCPLGPLCAKRHVRRRLCPYYVAGFCPEGPNCANAHPRWSENLPKPTIRV 205 Query: 777 SQMKALLEEESKKVAIEDEIEDQRKK 854 + + LE E + E E E +R++ Sbjct: 206 EKTEEELEHERNLIREEQERERERER 231
>Q13064:MKRN3_HUMAN Makorin-3 - Homo sapiens (Human)| Length = 507 Score = 38.1 bits (87), Expect = 0.10 Identities = 14/35 (40%), Positives = 23/35 (65%) Frame = +3 Query: 402 PKVPVGVDPKSILCEFFKVGQCQKGFKCKFSHDLN 506 P G+ K I+C ++ GQC++G C++SHDL+ Sbjct: 88 PSRSSGIWTKQIICRYYIHGQCKEGENCRYSHDLS 122
>Q8BYK8:ZC3H6_MOUSE Zinc finger CCCH domain-containing protein 6 - Mus musculus (Mouse)| Length = 1177 Score = 37.7 bits (86), Expect = 0.14 Identities = 14/34 (41%), Positives = 22/34 (64%) Frame = +3 Query: 438 LCEFFKVGQCQKGFKCKFSHDLNVQRKGEKIDIY 539 +C++F G+C KG CKF+HD +++K E Y Sbjct: 275 ICKYFLEGRCIKGDHCKFNHDAELEKKKEVCKYY 308
>Q6AXL8:ZMAT5_DANRE Zinc finger matrin-type protein 5 - Danio rerio (Zebrafish)| (Brachydanio rerio) Length = 173 Score = 37.4 bits (85), Expect = 0.18 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 7/69 (10%) Frame = +3 Query: 429 KSILCEFFKVGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKR-------DGEEEDTMDDWD 587 K + +F + GQC G C+FSH Q K + I +KR DG E ++D+W Sbjct: 54 KEVCRKFVQTGQCVFGTSCRFSHMSEKQMKMLEQKIDDEKRQKEDPDQDGSSERSVDEWL 113 Query: 588 QETLEKVIA 614 +K+ A Sbjct: 114 SRREKKLAA 122
>P61129:ZC3H6_HUMAN Zinc finger CCCH domain-containing protein 6 - Homo sapiens (Human)| Length = 1189 Score = 37.0 bits (84), Expect = 0.23 Identities = 13/34 (38%), Positives = 22/34 (64%) Frame = +3 Query: 438 LCEFFKVGQCQKGFKCKFSHDLNVQRKGEKIDIY 539 +C++F G+C KG +CKF HD ++++ E Y Sbjct: 277 ICKYFLEGRCIKGDQCKFDHDAELEKRKEICKFY 310
>Q4WKD9:YTH1_ASPFU mRNA 3'-end-processing protein yth1 - Aspergillus fumigatus| (Sartorya fumigata) Length = 254 Score = 37.0 bits (84), Expect = 0.23 Identities = 37/156 (23%), Positives = 60/156 (38%), Gaps = 15/156 (9%) Frame = +3 Query: 432 SILCEFFKVGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRDGEEEDTMDDWDQETLEKVI 611 S++C+ F G C+KG KC++ H+ N++R E S R G + D Q E+ Sbjct: 89 SLVCKHFLKGLCKKGLKCEYLHEYNLRRMPE---CQSFSRSGYCPNGDDCLYQHVREQAR 145 Query: 612 ASKNADYQQ-----------NKPTDIVCKHFLDAVEKKQYGWFWVCPNG----GTECRYR 746 +Y Q +CK++L CP G R+ Sbjct: 146 LPPCENYDQGFCELGPLCSKRHVRRRLCKYYLAG----------FCPEGKACPDAHPRWS 195 Query: 747 HALPPGYVLKSQMKALLEEESKKVAIEDEIEDQRKK 854 LP + + + LE E + E E E +R++ Sbjct: 196 ENLPKPTMRVEKTEEELERERALIREEQEREKERER 231
>Q8N5P1:ZC3H8_HUMAN Zinc finger CCCH domain-containing protein 8 - Homo sapiens (Human)| Length = 291 Score = 36.6 bits (83), Expect = 0.30 Identities = 13/34 (38%), Positives = 21/34 (61%) Frame = +3 Query: 438 LCEFFKVGQCQKGFKCKFSHDLNVQRKGEKIDIY 539 +C++F +C KG +CKF HD +++K E Y Sbjct: 196 ICKYFLERKCIKGDQCKFDHDAEIEKKKEMCKFY 229
>Q13434:MKRN4_HUMAN Makorin-4 - Homo sapiens (Human)| Length = 485 Score = 36.6 bits (83), Expect = 0.30 Identities = 12/26 (46%), Positives = 19/26 (73%) Frame = +3 Query: 429 KSILCEFFKVGQCQKGFKCKFSHDLN 506 K + C +FK G C++G C++SHDL+ Sbjct: 92 KQVTCRYFKYGICKEGDNCRYSHDLS 117
>Q9DD48:MKRN2_SERQU Makorin-2 - Seriola quinqueradiata (Five-ray yellowtail)| Length = 423 Score = 36.2 bits (82), Expect = 0.40 Identities = 13/26 (50%), Positives = 18/26 (69%) Frame = +3 Query: 429 KSILCEFFKVGQCQKGFKCKFSHDLN 506 K + C +F G C++G +C FSHDLN Sbjct: 4 KQVTCRYFLHGVCREGSRCLFSHDLN 29
>Q6ZPZ3:CS007_MOUSE Zinc finger CCCH domain-containing protein C19orf7 homolog - Mus| musculus (Mouse) Length = 1304 Score = 36.2 bits (82), Expect = 0.40 Identities = 13/35 (37%), Positives = 21/35 (60%) Frame = +3 Query: 435 ILCEFFKVGQCQKGFKCKFSHDLNVQRKGEKIDIY 539 ++C++F G+C G C FSHD+ + +K E Y Sbjct: 393 VICKYFVEGRCTWGDHCNFSHDIELPKKRELCKFY 427
>Q9UPT8:CS007_HUMAN Zinc finger CCCH domain-containing protein C19orf7 - Homo sapiens| (Human) Length = 1303 Score = 36.2 bits (82), Expect = 0.40 Identities = 13/35 (37%), Positives = 21/35 (60%) Frame = +3 Query: 435 ILCEFFKVGQCQKGFKCKFSHDLNVQRKGEKIDIY 539 ++C++F G+C G C FSHD+ + +K E Y Sbjct: 394 VICKYFVEGRCTWGDHCNFSHDIELPKKRELCKFY 428
>Q9JJ48:ZC3H8_MOUSE Zinc finger CCCH domain-containing protein 8 - Mus musculus (Mouse)| Length = 305 Score = 35.8 bits (81), Expect = 0.52 Identities = 13/34 (38%), Positives = 21/34 (61%) Frame = +3 Query: 438 LCEFFKVGQCQKGFKCKFSHDLNVQRKGEKIDIY 539 +C++F +C KG +CKF HD +++K E Y Sbjct: 210 VCKYFLERKCIKGDQCKFDHDAEIEKKKEMCKYY 243
>Q9TT91:MKRN1_MACEU Makorin-1 - Macropus eugenii (Tammar wallaby)| Length = 478 Score = 35.8 bits (81), Expect = 0.52 Identities = 12/29 (41%), Positives = 19/29 (65%) Frame = +3 Query: 429 KSILCEFFKVGQCQKGFKCKFSHDLNVQR 515 K + C +F G C+KG C++SHDL+ + Sbjct: 53 KQVTCRYFMHGVCKKGNNCRYSHDLSTSQ 81
>Q9H446:RWDD1_HUMAN RWD domain-containing protein 1 - Homo sapiens (Human)| Length = 243 Score = 35.4 bits (80), Expect = 0.68 Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 11/129 (8%) Frame = +3 Query: 780 QMKALLEEESKKVAIEDEIEDQRKKVQTTTPMTTELFMEW--XXXXXXXXXXXXXXXXXD 953 Q+K EEE K+ E E E+ K++ TP+T E F+ W + Sbjct: 117 QIKTRREEEKKQK--EKEAEEAEKQLFHGTPVTIENFLNWKAKFDAELLEIKKKRMKEEE 174 Query: 954 RAKNDRMSGRELFMADASV------FIDDA-EAYEVYERL--EEPQANQEQGKKSQDEGP 1106 +A +++SG++LF D ++ F++DA EV E L E E + D P Sbjct: 175 QAGKNKLSGKQLFETDHNLDTSDIQFLEDAGNNVEVDESLFQEMDDLELEDDEDDPDYNP 234 Query: 1107 SSSTSNGKE 1133 + S+ + Sbjct: 235 ADPESDSAD 243
>Q02799:LEE1_YEAST Zinc finger protein LEE1 - Saccharomyces cerevisiae (Baker's yeast)| Length = 301 Score = 35.4 bits (80), Expect = 0.68 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = +3 Query: 423 DPKSILCEFFKVGQCQKGFKCKFSHDLNV 509 D + C+FFK+G CQ G C FSH ++ Sbjct: 87 DYSHVPCKFFKMGNCQAGSSCPFSHSPDI 115
>Q9DFG8:MKRN2_DANRE Makorin-2 - Danio rerio (Zebrafish) (Brachydanio rerio)| Length = 414 Score = 34.7 bits (78), Expect = 1.2 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = +3 Query: 429 KSILCEFFKVGQCQKGFKCKFSHDLNVQR 515 K + C +F G C++G +C FSHDL + Sbjct: 4 KQVTCRYFLHGVCREGSRCLFSHDLTTSK 32
>Q9H000:MKRN2_HUMAN Makorin-2 - Homo sapiens (Human)| Length = 416 Score = 34.3 bits (77), Expect = 1.5 Identities = 13/25 (52%), Positives = 17/25 (68%) Frame = +3 Query: 429 KSILCEFFKVGQCQKGFKCKFSHDL 503 K I C +F G C++G +C FSHDL Sbjct: 4 KQITCRYFMHGVCREGSQCLFSHDL 28
>Q9ERV1:MKRN2_MOUSE Makorin-2 - Mus musculus (Mouse)| Length = 416 Score = 33.9 bits (76), Expect = 2.0 Identities = 12/25 (48%), Positives = 17/25 (68%) Frame = +3 Query: 429 KSILCEFFKVGQCQKGFKCKFSHDL 503 K + C +F G C++G +C FSHDL Sbjct: 4 KQVTCRYFMHGVCREGSQCLFSHDL 28
>Q9QXP6:MKRN1_MOUSE Makorin-1 - Mus musculus (Mouse)| Length = 481 Score = 33.9 bits (76), Expect = 2.0 Identities = 11/26 (42%), Positives = 18/26 (69%) Frame = +3 Query: 429 KSILCEFFKVGQCQKGFKCKFSHDLN 506 K + C +F G C++G C++SHDL+ Sbjct: 57 KQVTCRYFMHGVCKEGDNCRYSHDLS 82
>Q9UHC7:MKRN1_HUMAN Makorin-1 - Homo sapiens (Human)| Length = 482 Score = 33.9 bits (76), Expect = 2.0 Identities = 11/26 (42%), Positives = 18/26 (69%) Frame = +3 Query: 429 KSILCEFFKVGQCQKGFKCKFSHDLN 506 K + C +F G C++G C++SHDL+ Sbjct: 57 KQVTCRYFMHGVCKEGDNCRYSHDLS 82
>P41000:SCP3_SCHPO Protein scp3 - Schizosaccharomyces pombe (Fission yeast)| Length = 583 Score = 33.5 bits (75), Expect = 2.6 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 3/31 (9%) Frame = +3 Query: 426 PKSIL---CEFFKVGQCQKGFKCKFSHDLNV 509 PKS+ C+FF+ G C G C FSHDL + Sbjct: 33 PKSLQHVPCKFFRQGTCTSGKNCIFSHDLEL 63
>P47976:CTH1_YEAST Zinc finger protein CTH1 - Saccharomyces cerevisiae (Baker's yeast)| Length = 325 Score = 33.5 bits (75), Expect = 2.6 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%) Frame = +3 Query: 429 KSILCEFFKV-GQCQKGFKCKFSHDLNVQRKGEKIDIYSDK 548 K+ LCE F + G C+ G KC+F+H LN + +K + Y K Sbjct: 206 KTELCESFTIKGYCKYGNKCQFAHGLNELKFKKKSNNYRTK 246
>Q6C922:YTH1_YARLI mRNA 3'-end-processing protein YTH1 - Yarrowia lipolytica (Candida| lipolytica) Length = 193 Score = 33.1 bits (74), Expect = 3.4 Identities = 12/30 (40%), Positives = 20/30 (66%) Frame = +3 Query: 435 ILCEFFKVGQCQKGFKCKFSHDLNVQRKGE 524 I+C+ + G C+KG C+F H+ N+Q+ E Sbjct: 58 IVCKHWLRGLCKKGLNCEFLHEYNLQKMPE 87
>Q5KND3:SLT11_CRYNE Pre-mRNA-splicing factor SLT11 - Cryptococcus neoformans| (Filobasidiella neoformans) Length = 326 Score = 33.1 bits (74), Expect = 3.4 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 6/45 (13%) Frame = +3 Query: 438 LCEFFKVGQCQKGFKCKFSHDLNVQRKGEK------IDIYSDKRD 554 +C FF G+C++G +C F H++ + + +K +D Y + D Sbjct: 160 ICSFFVKGECKRGAECPFRHEMPKENETQKPSQQSLVDRYYGRND 204
>Q9H0J9:PAR12_HUMAN Poly [ADP-ribose] polymerase 12 - Homo sapiens (Human)| Length = 701 Score = 33.1 bits (74), Expect = 3.4 Identities = 12/32 (37%), Positives = 20/32 (62%) Frame = +3 Query: 438 LCEFFKVGQCQKGFKCKFSHDLNVQRKGEKID 533 +C++F G+C+ G CK SHD + EK++ Sbjct: 180 ICQYFLQGECKFGTSCKRSHDFSNSENLEKLE 211
>Q5ACW2:CWC24_CANAL Pre-mRNA-splicing factor CWC24 - Candida albicans (Yeast)| Length = 216 Score = 33.1 bits (74), Expect = 3.4 Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 4/95 (4%) Frame = +3 Query: 444 EFFKVGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRDGEEEDTMDDWDQETLEKVIASKN 623 +F ++G C G CKF H + R +KI I D G +++ ++E + Sbjct: 106 DFQQIGYCGYGDTCKFLHVRDESR--QKIPIKKDWEIGGQKEVK---EKEDIPFKCVLCK 160 Query: 624 ADYQQNKPTD---IVCKH-FLDAVEKKQYGWFWVC 716 +DY+ T+ I CK FLD + K+ G ++C Sbjct: 161 SDYKSPIKTECGHIFCKACFLDRYKAKKKGTCFIC 195
>O74463:YQC1_SCHPO Uncharacterized protein C1739.01 - Schizosaccharomyces pombe| (Fission yeast) Length = 547 Score = 32.7 bits (73), Expect = 4.4 Identities = 12/25 (48%), Positives = 15/25 (60%) Frame = +3 Query: 441 CEFFKVGQCQKGFKCKFSHDLNVQR 515 C+FF+ G C G C FSH L +R Sbjct: 47 CKFFRNGTCTAGENCPFSHSLETER 71
>P55884:IF39_HUMAN Eukaryotic translation initiation factor 3 subunit 9 - Homo sapiens| (Human) Length = 814 Score = 32.3 bits (72), Expect = 5.7 Identities = 11/39 (28%), Positives = 25/39 (64%) Frame = +3 Query: 486 KFSHDLNVQRKGEKIDIYSDKRDGEEEDTMDDWDQETLE 602 K + +L +++K E++++ E + +DDW++ET+E Sbjct: 762 KMAQELYMEQKNERLELRGGVDTDELDSNVDDWEEETIE 800
>Q4G061:IF39_RAT Eukaryotic translation initiation factor 3 subunit 9 - Rattus| norvegicus (Rat) Length = 797 Score = 32.0 bits (71), Expect = 7.5 Identities = 11/39 (28%), Positives = 25/39 (64%) Frame = +3 Query: 486 KFSHDLNVQRKGEKIDIYSDKRDGEEEDTMDDWDQETLE 602 K + +L +++K E++++ E + +DDW++ET+E Sbjct: 745 KMAQELYMKQKNERLELRGGVDTDELDSNVDDWEEETIE 783
>Q8JZQ9:IF39_MOUSE Eukaryotic translation initiation factor 3 subunit 9 - Mus musculus| (Mouse) Length = 803 Score = 32.0 bits (71), Expect = 7.5 Identities = 11/39 (28%), Positives = 25/39 (64%) Frame = +3 Query: 486 KFSHDLNVQRKGEKIDIYSDKRDGEEEDTMDDWDQETLE 602 K + +L +++K E++++ E + +DDW++ET+E Sbjct: 751 KMAQELYMKQKNERLELRGGVDTDELDSNVDDWEEETIE 789
>Q6FTL0:YTH1_CANGA mRNA 3'-end-processing protein YTH1 - Candida glabrata (Yeast)| (Torulopsis glabrata) Length = 209 Score = 31.6 bits (70), Expect = 9.8 Identities = 34/147 (23%), Positives = 62/147 (42%), Gaps = 5/147 (3%) Frame = +3 Query: 414 VGVDPKSILCEFFKVGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRDGEEEDTMDDWDQE 593 +G+ I+C+ + G C+K C++ H+ N+++ E + Y+ + + Sbjct: 59 LGIFQNKIVCKHWLRGLCKKNDNCEYLHEYNLRKMPECV-FYAKNGFCTQSPECQYLHID 117 Query: 594 TLEKVIASKNADYQQN-KPTDIVC--KHFLDAVEKKQYGWFWVCPNGGTECRYRHALPPG 764 L KV + DY+ P C +H + ++ F CP G EC H P Sbjct: 118 PLSKVPPCE--DYEMGFCPKGSACEKRHIKKVLCQRYINGF--CPLGRRECDMEH--PFF 171 Query: 765 YV--LKSQMKALLEEESKKVAIEDEIE 839 Y+ L S ++ +EE ++E E Sbjct: 172 YIPDLSSPLRIKKDEEINTRKRDEENE 198
>Q59T36:YTH1_CANAL mRNA 3'-end-processing protein YTH1 - Candida albicans (Yeast)| Length = 215 Score = 31.6 bits (70), Expect = 9.8 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 7/68 (10%) Frame = +3 Query: 429 KSILCEFFKVGQCQKGFKCKFS------HDLNVQ-RKGEKIDIYSDKRDGEEEDTMDDWD 587 + +LC + G C KG +C+F+ H+LN++ R I + S D +E++ D Sbjct: 148 RRVLCPLYLYGFCPKGPECEFTHPKFDFHNLNLRIRPDNLIQMTSKHVDNSKEESDKKED 207 Query: 588 QETLEKVI 611 E E+ I Sbjct: 208 SEPKEESI 215
>Q1LYG0:SPD2A_DANRE SH3 and PX domain-containing protein 2A - Danio rerio (Zebrafish)| (Brachydanio rerio) Length = 1068 Score = 31.6 bits (70), Expect = 9.8 Identities = 15/62 (24%), Positives = 30/62 (48%) Frame = +3 Query: 528 IDIYSDKRDGEEEDTMDDWDQETLEKVIASKNADYQQNKPTDIVCKHFLDAVEKKQYGWF 707 ++ Y KR + +D + LE+ + N + Q+N + +D +EK + GW+ Sbjct: 81 VEDYGSKR----KSGLDSSEPMVLEQYVVVANYERQENSEISLKAGETVDVIEKSESGWW 136 Query: 708 WV 713 +V Sbjct: 137 FV 138 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 217,550,840 Number of extensions: 4191015 Number of successful extensions: 11917 Number of sequences better than 10.0: 39 Number of HSP's gapped: 11886 Number of HSP's successfully gapped: 39 Length of query: 531 Length of database: 100,686,439 Length adjustment: 118 Effective length of query: 413 Effective length of database: 68,319,629 Effective search space: 28216006777 Effective search space used: 28216006777 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
