Clone Name | FLbaf94c07 |
---|---|
Clone Library Name | barley_pub |
>gb|M21400.1|BLYCI1A Barley chymotrypsin inhibitor (CI-1A) mRNA, complete cds Length = 446 Score = 876 bits (442), Expect = 0.0 Identities = 442/442 (100%) Strand = Plus / Plus Query: 2 aacatcttcttacatagcgaggacatctaaacaattattcagagttcattgaagaacatg 61 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5 aacatcttcttacatagcgaggacatctaaacaattattcagagttcattgaagaacatg 64 Query: 62 agttccatggagggaagtgtactgaagtacccagagcctaccgaagggagcatcggggct 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 65 agttccatggagggaagtgtactgaagtacccagagcctaccgaagggagcatcggggct 124 Query: 122 agcagtgctaaaacatcatggccggaggtggtcgggatgtccgccgagaaggccaaagag 181 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 125 agcagtgctaaaacatcatggccggaggtggtcgggatgtccgccgagaaggccaaagag 184 Query: 182 atcatccttcgggacaagcccaatgcccaggtagaggtcatcccggtcgatgcgatggtc 241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 185 atcatccttcgggacaagcccaatgcccaggtagaggtcatcccggtcgatgcgatggtc 244 Query: 242 cacctgaacttcgatcccaaccgtgtcttcgttctcgttgccgtcgccaggacccctacg 301 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 245 cacctgaacttcgatcccaaccgtgtcttcgttctcgttgccgtcgccaggacccctacg 304 Query: 302 gttggctaacaatattatcgtgcatggataataaataactatgtaatggtgaaataaaga 361 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 305 gttggctaacaatattatcgtgcatggataataaataactatgtaatggtgaaataaaga 364 Query: 362 catgccgagtatcagcatatcatgtaagaactttctgtatggtatacttatattatggag 421 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 365 catgccgagtatcagcatatcatgtaagaactttctgtatggtatacttatattatggag 424 Query: 422 gaataaagacatgttgaacatc 443 |||||||||||||||||||||| Sbjct: 425 gaataaagacatgttgaacatc 446
>gb|M21401.1|BLYCI1B Barley chymotrypsin inhibitor (CI-1B) mRNA, complete cds Length = 452 Score = 620 bits (313), Expect = e-174 Identities = 414/448 (92%), Gaps = 6/448 (1%) Strand = Plus / Plus Query: 2 aacatcttcttacatagcgaggacatctaaacaattattcag------agttcattgaag 55 ||||||||||||| || ||||||||||||| |||| ||| | |||| ||||||| Sbjct: 5 aacatcttcttacgcagagaggacatctaaataattcttcgggtgaatagttaattgaag 64 Query: 56 aacatgagttccatggagggaagtgtactgaagtacccagagcctaccgaagggagcatc 115 |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 65 aacatgcgttccatggagggaagtgtaccgaagtacccagagcctaccgaagggagcatc 124 Query: 116 ggggctagcagtgctaaaacatcatggccggaggtggtcgggatgtccgccgagaaggcc 175 || || ||| ||||||||| |||||||||||||||||| ||||||||||| ||||||||| Sbjct: 125 ggagccagcggtgctaaaagatcatggccggaggtggtagggatgtccgcggagaaggcc 184 Query: 176 aaagagatcatccttcgggacaagcccaatgcccaggtagaggtcatcccggtcgatgcg 235 ||||||||||| || |||||||||||| |||||||| ||||||||||||||||||||||| Sbjct: 185 aaagagatcattctccgggacaagcccgatgcccagatagaggtcatcccggtcgatgcg 244 Query: 236 atggtccacctgaacttcgatcccaaccgtgtcttcgttctcgttgccgtcgccaggacc 295 ||||||| |||| ||||| ||||||||||| ||||| ||||||||||||||||||||||| Sbjct: 245 atggtccccctggacttcaatcccaaccgtatcttcattctcgttgccgtcgccaggacc 304 Query: 296 cctacggttggctaacaatattatcgtgcatggataataaataactatgtaatggtgaaa 355 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 305 cctacggttggctaacaatattatcgtgcatggataataaataactatgtaatggtgaaa 364 Query: 356 taaagacatgccgagtatcagcatatcatgtaagaactttctgtatggtatacttatatt 415 ||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||| Sbjct: 365 taaagacatgcttagtatcagcatatcatggaataactttctgtatggtatacttatatt 424 Query: 416 atggaggaataaagacatgttgaacatc 443 |||||||||||||||||||||||||||| Sbjct: 425 atggaggaataaagacatgttgaacatc 452
>gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence Length = 261265 Score = 44.1 bits (22), Expect = 0.43 Identities = 46/54 (85%) Strand = Plus / Minus Query: 137 tcatggccggaggtggtcgggatgtccgccgagaaggccaaagagatcatcctt 190 |||||||||||||| || || | |||| |||| ||||||| |||||||||||| Sbjct: 220786 tcatggccggaggtagtgggaaagtccatcgaggaggccaaggagatcatcctt 220733
>gb|AC113122.9| Mus musculus chromosome 8, clone RP23-349P4, complete sequence Length = 203728 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 45 gttcattgaagaacatgagtt 65 ||||||||||||||||||||| Sbjct: 120605 gttcattgaagaacatgagtt 120585
>ref|XM_544373.2| PREDICTED: Canis familiaris similar to Ectoderm-neural cortex-1 protein (ENC-1) (p53-induced protein 10) (Nuclear matrix protein NRP/B) (LOC487247), mRNA Length = 1944 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 168 agaaggccaaagagatcatcc 188 ||||||||||||||||||||| Sbjct: 1118 agaaggccaaagagatcatcc 1138
>emb|BX897665.7| Zebrafish DNA sequence from clone DKEY-27K7 in linkage group 4, complete sequence Length = 129995 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 416 atggaggaataaagacatgtt 436 ||||||||||||||||||||| Sbjct: 107129 atggaggaataaagacatgtt 107109
>emb|CR382299.29| Zebrafish DNA sequence from clone DKEY-9I13 in linkage group 2, complete sequence Length = 129662 Score = 40.1 bits (20), Expect = 6.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 409 ttatattatggaggaataaagacatgtt 436 |||||||| ||||||| ||||||||||| Sbjct: 119655 ttatattagggaggaaaaaagacatgtt 119682
>gb|AC167129.5| Mus musculus chromosome 5, clone RP23-397D16, complete sequence Length = 197551 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 aaacaattattcagagttca 49 |||||||||||||||||||| Sbjct: 84200 aaacaattattcagagttca 84181
>gb|AC120527.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0011J22 map R10571S, complete sequence Length = 154441 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 333 taaataactatgtaatggtg 352 |||||||||||||||||||| Sbjct: 63049 taaataactatgtaatggtg 63030
>gb|AC150919.6| Bos taurus BAC CH240-303F16 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)) complete sequence Length = 160376 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 329 ataataaataactatgtaat 348 |||||||||||||||||||| Sbjct: 1379 ataataaataactatgtaat 1398
>gb|AC135564.4| Oryza sativa chromosome 3 BAC OSJNBb0056O10 genomic sequence, complete sequence Length = 139771 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 333 taaataactatgtaatggtg 352 |||||||||||||||||||| Sbjct: 21082 taaataactatgtaatggtg 21063
>gb|AY268980.1| Lactobacillus reuteri hypothetical membrane protein (Lre0053) gene, partial cds Length = 276 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 gctaaaacatcatggccgga 147 |||||||||||||||||||| Sbjct: 231 gctaaaacatcatggccgga 250
>gb|AY424272.1| Brachypodium distachyon ecotype ABR5 serine proteinase inhibitor (PIN1) mRNA, complete cds Length = 440 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 140 tggccggaggtggtcgggatgtcc 163 |||||||||||||||||| ||||| Sbjct: 119 tggccggaggtggtcgggctgtcc 142
>dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003 Length = 4170692 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 412 tattatggaggaataaagac 431 |||||||||||||||||||| Sbjct: 2260666 tattatggaggaataaagac 2260685
>gb|AC182428.2| Pan troglodytes BAC clone CH251-637G21 from chromosome 4, complete sequence Length = 210098 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 345 taatggtgaaataaagacat 364 |||||||||||||||||||| Sbjct: 201381 taatggtgaaataaagacat 201400
>gb|AC091877.2| Homo sapiens chromosome 5 clone CTD-3061E14, complete sequence Length = 147536 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 345 taatggtgaaataaagacat 364 |||||||||||||||||||| Sbjct: 26203 taatggtgaaataaagacat 26222
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11 Length = 28386948 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 333 taaataactatgtaatggtg 352 |||||||||||||||||||| Sbjct: 3251936 taaataactatgtaatggtg 3251955
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 333 taaataactatgtaatggtg 352 |||||||||||||||||||| Sbjct: 21859763 taaataactatgtaatggtg 21859782
>gb|AY257863.1| Oryza sativa (japonica cultivar-group) chromosome 11 genomic sequence Length = 42748 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 333 taaataactatgtaatggtg 352 |||||||||||||||||||| Sbjct: 6147 taaataactatgtaatggtg 6166
>emb|AL627271.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18, complete chromosome; segment 7/20 Length = 233050 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 50 ttgaagaacatgagttccat 69 |||||||||||||||||||| Sbjct: 55658 ttgaagaacatgagttccat 55639
>gb|AC008939.8| Homo sapiens chromosome 5 clone CTD-2316B1, complete sequence Length = 112755 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 345 taatggtgaaataaagacat 364 |||||||||||||||||||| Sbjct: 110726 taatggtgaaataaagacat 110745
>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 Length = 4585229 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 50 ttgaagaacatgagttccat 69 |||||||||||||||||||| Sbjct: 1514226 ttgaagaacatgagttccat 1514207
>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome Length = 4791961 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 ttgaagaacatgagttccat 69 |||||||||||||||||||| Sbjct: 1352478 ttgaagaacatgagttccat 1352497
>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67, complete genome Length = 4755700 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 ttgaagaacatgagttccat 69 |||||||||||||||||||| Sbjct: 1535760 ttgaagaacatgagttccat 1535779 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 75,239,567 Number of extensions: 3988308 Number of successful extensions: 252879 Number of sequences better than 10.0: 24 Number of HSP's gapped: 252879 Number of HSP's successfully gapped: 25 Length of query: 465 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 443 Effective length of database: 18,508,616,841 Effective search space: 8199317260563 Effective search space used: 8199317260563 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 13 (26.3 bits)