ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf94c07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|M21400.1|BLYCI1A Barley chymotrypsin inhibitor (CI-1A) mRNA, ... 876 0.0
2gb|M21401.1|BLYCI1B Barley chymotrypsin inhibitor (CI-1B) mRNA, ... 620 e-174
3gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence 44 0.43
4gb|AC113122.9| Mus musculus chromosome 8, clone RP23-349P4, comp... 42 1.7
5ref|XM_544373.2| PREDICTED: Canis familiaris similar to Ectoderm... 42 1.7
6emb|BX897665.7| Zebrafish DNA sequence from clone DKEY-27K7 in l... 42 1.7
7emb|CR382299.29| Zebrafish DNA sequence from clone DKEY-9I13 in ... 40 6.8
8gb|AC167129.5| Mus musculus chromosome 5, clone RP23-397D16, com... 40 6.8
9gb|AC120527.3| Oryza sativa (japonica cultivar-group) chromosome... 40 6.8
10gb|AC150919.6| Bos taurus BAC CH240-303F16 (Children's Hospital... 40 6.8
11gb|AC135564.4| Oryza sativa chromosome 3 BAC OSJNBb0056O10 genom... 40 6.8
12gb|AY268980.1| Lactobacillus reuteri hypothetical membrane prote... 40 6.8
13gb|AY424272.1| Brachypodium distachyon ecotype ABR5 serine prote... 40 6.8
14dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003 40 6.8
15gb|AC182428.2| Pan troglodytes BAC clone CH251-637G21 from chrom... 40 6.8
16gb|AC091877.2| Homo sapiens chromosome 5 clone CTD-3061E14, comp... 40 6.8
17dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.8
18dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.8
19gb|AY257863.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.8
20emb|AL627271.1| Salmonella enterica serovar Typhi (Salmonella ty... 40 6.8
21gb|AC008939.8| Homo sapiens chromosome 5 clone CTD-2316B1, compl... 40 6.8
22gb|CP000026.1| Salmonella enterica subsp. enterica serovar Parat... 40 6.8
23gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi... 40 6.8
24gb|AE017220.1| Salmonella enterica subsp. enterica serovar Chole... 40 6.8

>gb|M21400.1|BLYCI1A Barley chymotrypsin inhibitor (CI-1A) mRNA, complete cds
          Length = 446
 Score =  876 bits (442), Expect = 0.0
 Identities = 442/442 (100%)
 Strand = Plus / Plus

                                                                       
Query: 2   aacatcttcttacatagcgaggacatctaaacaattattcagagttcattgaagaacatg 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5   aacatcttcttacatagcgaggacatctaaacaattattcagagttcattgaagaacatg 64

                                                                       
Query: 62  agttccatggagggaagtgtactgaagtacccagagcctaccgaagggagcatcggggct 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65  agttccatggagggaagtgtactgaagtacccagagcctaccgaagggagcatcggggct 124

                                                                       
Query: 122 agcagtgctaaaacatcatggccggaggtggtcgggatgtccgccgagaaggccaaagag 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 agcagtgctaaaacatcatggccggaggtggtcgggatgtccgccgagaaggccaaagag 184

                                                                       
Query: 182 atcatccttcgggacaagcccaatgcccaggtagaggtcatcccggtcgatgcgatggtc 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 atcatccttcgggacaagcccaatgcccaggtagaggtcatcccggtcgatgcgatggtc 244

                                                                       
Query: 242 cacctgaacttcgatcccaaccgtgtcttcgttctcgttgccgtcgccaggacccctacg 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 cacctgaacttcgatcccaaccgtgtcttcgttctcgttgccgtcgccaggacccctacg 304

                                                                       
Query: 302 gttggctaacaatattatcgtgcatggataataaataactatgtaatggtgaaataaaga 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gttggctaacaatattatcgtgcatggataataaataactatgtaatggtgaaataaaga 364

                                                                       
Query: 362 catgccgagtatcagcatatcatgtaagaactttctgtatggtatacttatattatggag 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 catgccgagtatcagcatatcatgtaagaactttctgtatggtatacttatattatggag 424

                                 
Query: 422 gaataaagacatgttgaacatc 443
           ||||||||||||||||||||||
Sbjct: 425 gaataaagacatgttgaacatc 446



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>gb|M21401.1|BLYCI1B Barley chymotrypsin inhibitor (CI-1B) mRNA, complete cds
          Length = 452

 Score =  620 bits (313), Expect = e-174
 Identities = 414/448 (92%), Gaps = 6/448 (1%)
 Strand = Plus / Plus

                                                                       
Query: 2   aacatcttcttacatagcgaggacatctaaacaattattcag------agttcattgaag 55
           |||||||||||||  || ||||||||||||| |||| ||| |      |||| |||||||
Sbjct: 5   aacatcttcttacgcagagaggacatctaaataattcttcgggtgaatagttaattgaag 64

                                                                       
Query: 56  aacatgagttccatggagggaagtgtactgaagtacccagagcctaccgaagggagcatc 115
           |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 65  aacatgcgttccatggagggaagtgtaccgaagtacccagagcctaccgaagggagcatc 124

                                                                       
Query: 116 ggggctagcagtgctaaaacatcatggccggaggtggtcgggatgtccgccgagaaggcc 175
           || || ||| ||||||||| |||||||||||||||||| ||||||||||| |||||||||
Sbjct: 125 ggagccagcggtgctaaaagatcatggccggaggtggtagggatgtccgcggagaaggcc 184

                                                                       
Query: 176 aaagagatcatccttcgggacaagcccaatgcccaggtagaggtcatcccggtcgatgcg 235
           ||||||||||| || |||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 185 aaagagatcattctccgggacaagcccgatgcccagatagaggtcatcccggtcgatgcg 244

                                                                       
Query: 236 atggtccacctgaacttcgatcccaaccgtgtcttcgttctcgttgccgtcgccaggacc 295
           ||||||| |||| ||||| ||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 245 atggtccccctggacttcaatcccaaccgtatcttcattctcgttgccgtcgccaggacc 304

                                                                       
Query: 296 cctacggttggctaacaatattatcgtgcatggataataaataactatgtaatggtgaaa 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 cctacggttggctaacaatattatcgtgcatggataataaataactatgtaatggtgaaa 364

                                                                       
Query: 356 taaagacatgccgagtatcagcatatcatgtaagaactttctgtatggtatacttatatt 415
           |||||||||||  ||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 365 taaagacatgcttagtatcagcatatcatggaataactttctgtatggtatacttatatt 424

                                       
Query: 416 atggaggaataaagacatgttgaacatc 443
           ||||||||||||||||||||||||||||
Sbjct: 425 atggaggaataaagacatgttgaacatc 452



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>gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence
          Length = 261265

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 46/54 (85%)
 Strand = Plus / Minus

                                                                    
Query: 137    tcatggccggaggtggtcgggatgtccgccgagaaggccaaagagatcatcctt 190
              |||||||||||||| || || | ||||  |||| ||||||| ||||||||||||
Sbjct: 220786 tcatggccggaggtagtgggaaagtccatcgaggaggccaaggagatcatcctt 220733



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>gb|AC113122.9| Mus musculus chromosome 8, clone RP23-349P4, complete sequence
          Length = 203728

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 45     gttcattgaagaacatgagtt 65
              |||||||||||||||||||||
Sbjct: 120605 gttcattgaagaacatgagtt 120585



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>ref|XM_544373.2| PREDICTED: Canis familiaris similar to Ectoderm-neural cortex-1
            protein (ENC-1) (p53-induced protein 10) (Nuclear matrix
            protein NRP/B) (LOC487247), mRNA
          Length = 1944

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 168  agaaggccaaagagatcatcc 188
            |||||||||||||||||||||
Sbjct: 1118 agaaggccaaagagatcatcc 1138



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>emb|BX897665.7| Zebrafish DNA sequence from clone DKEY-27K7 in linkage group 4, complete
              sequence
          Length = 129995

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 416    atggaggaataaagacatgtt 436
              |||||||||||||||||||||
Sbjct: 107129 atggaggaataaagacatgtt 107109



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>emb|CR382299.29| Zebrafish DNA sequence from clone DKEY-9I13 in linkage group 2, complete
              sequence
          Length = 129662

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 409    ttatattatggaggaataaagacatgtt 436
              |||||||| ||||||| |||||||||||
Sbjct: 119655 ttatattagggaggaaaaaagacatgtt 119682



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>gb|AC167129.5| Mus musculus chromosome 5, clone RP23-397D16, complete sequence
          Length = 197551

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 30    aaacaattattcagagttca 49
             ||||||||||||||||||||
Sbjct: 84200 aaacaattattcagagttca 84181



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>gb|AC120527.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0011J22 map R10571S, complete sequence
          Length = 154441

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 333   taaataactatgtaatggtg 352
             ||||||||||||||||||||
Sbjct: 63049 taaataactatgtaatggtg 63030



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>gb|AC150919.6| Bos taurus  BAC CH240-303F16 (Children's Hospital Oakland Research
            Institute Bovine BAC Library (male)) complete sequence
          Length = 160376

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 329  ataataaataactatgtaat 348
            ||||||||||||||||||||
Sbjct: 1379 ataataaataactatgtaat 1398



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>gb|AC135564.4| Oryza sativa chromosome 3 BAC OSJNBb0056O10 genomic sequence, complete
             sequence
          Length = 139771

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 333   taaataactatgtaatggtg 352
             ||||||||||||||||||||
Sbjct: 21082 taaataactatgtaatggtg 21063



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>gb|AY268980.1| Lactobacillus reuteri hypothetical membrane protein (Lre0053) gene,
           partial cds
          Length = 276

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 128 gctaaaacatcatggccgga 147
           ||||||||||||||||||||
Sbjct: 231 gctaaaacatcatggccgga 250



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>gb|AY424272.1| Brachypodium distachyon ecotype ABR5 serine proteinase inhibitor
           (PIN1) mRNA, complete cds
          Length = 440

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 140 tggccggaggtggtcgggatgtcc 163
           |||||||||||||||||| |||||
Sbjct: 119 tggccggaggtggtcgggctgtcc 142



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>dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003
          Length = 4170692

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 412     tattatggaggaataaagac 431
               ||||||||||||||||||||
Sbjct: 2260666 tattatggaggaataaagac 2260685



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>gb|AC182428.2| Pan troglodytes BAC clone CH251-637G21 from chromosome 4, complete
              sequence
          Length = 210098

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 345    taatggtgaaataaagacat 364
              ||||||||||||||||||||
Sbjct: 201381 taatggtgaaataaagacat 201400



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>gb|AC091877.2| Homo sapiens chromosome 5 clone CTD-3061E14, complete sequence
          Length = 147536

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 345   taatggtgaaataaagacat 364
             ||||||||||||||||||||
Sbjct: 26203 taatggtgaaataaagacat 26222



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11
          Length = 28386948

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 333     taaataactatgtaatggtg 352
               ||||||||||||||||||||
Sbjct: 3251936 taaataactatgtaatggtg 3251955



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3
          Length = 36192742

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 333      taaataactatgtaatggtg 352
                ||||||||||||||||||||
Sbjct: 21859763 taaataactatgtaatggtg 21859782



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>gb|AY257863.1| Oryza sativa (japonica cultivar-group) chromosome 11 genomic sequence
          Length = 42748

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 333  taaataactatgtaatggtg 352
            ||||||||||||||||||||
Sbjct: 6147 taaataactatgtaatggtg 6166



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>emb|AL627271.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18,
             complete chromosome; segment 7/20
          Length = 233050

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 50    ttgaagaacatgagttccat 69
             ||||||||||||||||||||
Sbjct: 55658 ttgaagaacatgagttccat 55639



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>gb|AC008939.8| Homo sapiens chromosome 5 clone CTD-2316B1, complete sequence
          Length = 112755

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 345    taatggtgaaataaagacat 364
              ||||||||||||||||||||
Sbjct: 110726 taatggtgaaataaagacat 110745



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>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150
          Length = 4585229

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 50      ttgaagaacatgagttccat 69
               ||||||||||||||||||||
Sbjct: 1514226 ttgaagaacatgagttccat 1514207



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>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome
          Length = 4791961

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 50      ttgaagaacatgagttccat 69
               ||||||||||||||||||||
Sbjct: 1352478 ttgaagaacatgagttccat 1352497



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>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67,
               complete genome
          Length = 4755700

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 50      ttgaagaacatgagttccat 69
               ||||||||||||||||||||
Sbjct: 1535760 ttgaagaacatgagttccat 1535779


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 75,239,567
Number of extensions: 3988308
Number of successful extensions: 252879
Number of sequences better than 10.0: 24
Number of HSP's gapped: 252879
Number of HSP's successfully gapped: 25
Length of query: 465
Length of database: 18,610,659,111
Length adjustment: 22
Effective length of query: 443
Effective length of database: 18,508,616,841
Effective search space: 8199317260563
Effective search space used: 8199317260563
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 13 (26.3 bits)
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