ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf91c17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q5R6Q7:SNX16_PONPY Sorting nexin-16 - Pongo pygmaeus (Orangutan) 34 1.0
2Q15735:PI5PA_HUMAN Phosphatidylinositol 4,5-bisphosphate 5-phosp... 33 1.3
3P57768:SNX16_HUMAN Sorting nexin-16 - Homo sapiens (Human) 32 2.9
4Q99LH4:ZN672_MOUSE Zinc finger protein 672 - Mus musculus (Mouse) 31 6.5
5Q9JLZ9:VAX2_RAT Ventral anterior homeobox 2 - Rattus norvegicus ... 31 8.5
6Q9QX74:SHAN2_RAT SH3 and multiple ankyrin repeat domains protein... 31 8.5

>Q5R6Q7:SNX16_PONPY Sorting nexin-16 - Pongo pygmaeus (Orangutan)|
          Length = 344
 Score = 33.9 bits (76), Expect = 1.0
 Identities = 20/50 (40%), Positives = 26/50 (52%)
 Frame = +2

Query: 443 CSSPLVKASFLGAQASRPYDRATRLCGSRISRPPWTVP*EPRPSHATLVG 592
           CSSPL++  F GA +S  Y    R       + P TV  E RPS  T++G
Sbjct: 68  CSSPLIRTKFTGAASSIEYSTRPR---ETEEQNPETVNWEDRPSTPTILG 114



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>Q15735:PI5PA_HUMAN Phosphatidylinositol 4,5-bisphosphate 5-phosphatase A - Homo|
           sapiens (Human)
          Length = 1006

 Score = 33.5 bits (75), Expect = 1.3
 Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +1

Query: 472 PRCPSFPSLRPGHSPLRLPNQPPAMDGAMRTSALPRNSSRAS-PMRSFTASTPVVLAPPE 648
           P+ P  PS  P HSP R P  PPA D      ALPR  ++++ P R  + +     AP  
Sbjct: 342 PKPPRSPSRSPSHSPNRSPCVPPAPD-----MALPRLGTQSTGPGRCLSPNLQAQEAPAP 396

Query: 649 V 651
           V
Sbjct: 397 V 397



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>P57768:SNX16_HUMAN Sorting nexin-16 - Homo sapiens (Human)|
          Length = 344

 Score = 32.3 bits (72), Expect = 2.9
 Identities = 19/50 (38%), Positives = 25/50 (50%)
 Frame = +2

Query: 443 CSSPLVKASFLGAQASRPYDRATRLCGSRISRPPWTVP*EPRPSHATLVG 592
           CSSPL++  F G  +S  Y    R       + P TV  E RPS  T++G
Sbjct: 68  CSSPLIRTKFTGTASSIEYSTRPR---DTEEQNPETVNWEDRPSTPTILG 114



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>Q99LH4:ZN672_MOUSE Zinc finger protein 672 - Mus musculus (Mouse)|
          Length = 468

 Score = 31.2 bits (69), Expect = 6.5
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = +1

Query: 466 KFPRCPSFPSLRPGHSPLRLPNQPPAMDGAMRTSALPRNSSRASPMRSFTASTP 627
           +FP  P+    R    P   P++ P    + R SALP + +RA P    T + P
Sbjct: 108 RFPHVPALLLHRARQHPPEKPHRCPLCARSFRQSALPFHLARAHPPEIITVTAP 161



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>Q9JLZ9:VAX2_RAT Ventral anterior homeobox 2 - Rattus norvegicus (Rat)|
          Length = 292

 Score = 30.8 bits (68), Expect = 8.5
 Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
 Frame = +1

Query: 472 PRCPSFPSLRPGHSPLRLPNQPPAMDGAMRTSAL--PRNSS-RASPMRSFTASTPVVLAP 642
           PR PS  +L PG          P +    R ++L  PRNSS R +PM S +AS+P  L P
Sbjct: 195 PRAPSLLALSPGL---------PGLTAGHRGTSLGDPRNSSQRLNPMPSASASSP--LPP 243

Query: 643 P 645
           P
Sbjct: 244 P 244



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>Q9QX74:SHAN2_RAT SH3 and multiple ankyrin repeat domains protein 2 - Rattus norvegicus|
            (Rat)
          Length = 1474

 Score = 30.8 bits (68), Expect = 8.5
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +1

Query: 499  RPGHSPLRLPNQPPAMDGAMRTSALPRNSSRASPMRSFTASTPV 630
            +P HSP  +P   P  +GA++ SA P  +  A+P R+  A+  V
Sbjct: 965  KPDHSPSTVPEGVPKTEGALQISAAPEPA--AAPGRTIVAAGSV 1006


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 161,862,710
Number of extensions: 3640312
Number of successful extensions: 10077
Number of sequences better than 10.0: 6
Number of HSP's gapped: 10054
Number of HSP's successfully gapped: 6
Length of query: 318
Length of database: 100,686,439
Length adjustment: 113
Effective length of query: 205
Effective length of database: 69,691,104
Effective search space: 14286676320
Effective search space used: 14286676320
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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