Clone Name | FLbaf94a16 |
---|---|
Clone Library Name | barley_pub |
>Q9LRE5:DPOD2_ORYSJ DNA polymerase delta small subunit - Oryza sativa subsp. japonica| (Rice) Length = 429 Score = 766 bits (1979), Expect = 0.0 Identities = 368/429 (85%), Positives = 398/429 (92%) Frame = +2 Query: 194 MERKQADYSNLDERYTIQGERYQGQQYSHIYYTRLHHMRTLLHALVPSRKPHLPVTTVLG 373 MERKQA+YSNLDERY IQGE+YQGQQYSHIY+TRLHHMR LLHALVPS KPHLPVTTVLG Sbjct: 1 MERKQAEYSNLDERYAIQGEKYQGQQYSHIYFTRLHHMRNLLHALVPSWKPHLPVTTVLG 60 Query: 374 LEKGKDCVLVGTLYKHMKLKPSILDEYSKERSAIPLVKPHNFMHSDDNLILEDESGRVAL 553 LE+GKDC++VGTLYKHMKLKPSILDEYSKERSAIPLVKPHNFMH DD+LILEDESGRV L Sbjct: 61 LEEGKDCIIVGTLYKHMKLKPSILDEYSKERSAIPLVKPHNFMHPDDHLILEDESGRVTL 120 Query: 554 AGAIPPAAYVTGVVVALHGKETSAGNFLVEDVMEAGLPPQSVLPCINEDKYXXXXXXXXX 733 AGAIPPAAYVTGVV+ALHGKETSAGNFLVED++EAG+PPQ LP INEDKY Sbjct: 121 AGAIPPAAYVTGVVIALHGKETSAGNFLVEDILEAGIPPQITLPSINEDKYVVFVSGLSI 180 Query: 734 XXXTFNPLQFQLLIDHITGHLGDENEQTIASKIVRVVVAGNSVHIAPRFLNGQTVAAKDQ 913 FNPLQFQLLIDHITGHLGDENEQ+IAS IVRVVVAGNSVHI+PRF NGQ VA+KDQ Sbjct: 181 GSEKFNPLQFQLLIDHITGHLGDENEQSIASNIVRVVVAGNSVHISPRFFNGQAVASKDQ 240 Query: 914 PRIAEPIKELDIMLTQLVASLPVDIMPGCNDPANFSLPQQPLHRCLFSGASTYNTFSSCP 1093 RIAEPIKELDIMLTQLVASLPVD+MPG NDPANFSLPQQPLHRCLF+GA+TYNTFSSC Sbjct: 241 SRIAEPIKELDIMLTQLVASLPVDMMPGSNDPANFSLPQQPLHRCLFAGAATYNTFSSCS 300 Query: 1094 NPHQFDLDNVKCIGTSGQNIDDLYRYSDAKDRLEFMERTLKWRHLAPTAPNSLGCYPYTD 1273 NPHQF+LD+V+ IGTSGQNIDDLY+YSDAKD+LEF+ERTL+WRHLAPTAPNSLGCYPYTD Sbjct: 301 NPHQFELDSVRFIGTSGQNIDDLYKYSDAKDKLEFVERTLRWRHLAPTAPNSLGCYPYTD 360 Query: 1274 KDPFLVETCPHVYFAGNQDKYETRLLKGTEKQQVRLISIPRFCESGIAVMLNLRNLECST 1453 KDPFLVE+CPHVYF GNQDKYET+LL+G EKQ+VRLI IPRFC+SG+AVMLNLRNLECST Sbjct: 361 KDPFLVESCPHVYFVGNQDKYETQLLQGLEKQKVRLICIPRFCDSGVAVMLNLRNLECST 420 Query: 1454 LSFSTSFDA 1480 LSFSTSFDA Sbjct: 421 LSFSTSFDA 429
>O48520:DPOD2_ARATH DNA polymerase delta small subunit - Arabidopsis thaliana (Mouse-ear| cress) Length = 456 Score = 611 bits (1575), Expect = e-174 Identities = 299/445 (67%), Positives = 355/445 (79%), Gaps = 18/445 (4%) Frame = +2 Query: 197 ERKQADYSNL-----------DERYTIQGERYQGQQYSHIYYTRLHHMRTLLHALVPSRK 343 ERKQ+DY++L DER+ IQ E Y+GQQYS IY+ RLH MRTLL++L P+ K Sbjct: 10 ERKQSDYNSLVRTLLLYRLVQDERFEIQKEMYRGQQYSQIYFARLHLMRTLLYSLAPTWK 69 Query: 344 PHLPVTTVLGLEKGKDCVLVGTLYKHMKLKPSILDEYSKERSAIPLVKPHNFMHSDDNLI 523 HLPV VLGLEKGK+C++VGTL+KHMKLKP +LDEYSKERS PLVKPHNFMH DDNLI Sbjct: 70 SHLPVCKVLGLEKGKECIIVGTLFKHMKLKPCVLDEYSKERSVTPLVKPHNFMHPDDNLI 129 Query: 524 LEDESGRVALAG-AIPPAAYVTGVVVALHGKETSAGNFLVEDVMEAGLPPQSVLPC-INE 697 LEDESGRV LAG A+ PA YVTGVVVALHGKET+AG F VEDV+EAGLPPQ P + E Sbjct: 130 LEDESGRVKLAGSALSPAIYVTGVVVALHGKETNAGEFFVEDVLEAGLPPQIERPIDLQE 189 Query: 698 DKYXXXXXXXXXXXXTFNPLQFQLLIDHITGHLGDENEQTIASKIVRVVVAGNSVHIAPR 877 DKY + NPLQFQLL+DHITGHLGDE EQ +A++IV VV+AGNS + Sbjct: 190 DKYVVLLSGLCIGSKSANPLQFQLLVDHITGHLGDEEEQGLAAQIVHVVIAGNSFEFPRK 249 Query: 878 FLNGQTV-----AAKDQPRIAEPIKELDIMLTQLVASLPVDIMPGCNDPANFSLPQQPLH 1042 +NGQ + A+KDQ + EPIKELDIML+Q+ A + VDIMPG NDPANF+LPQQPL+ Sbjct: 250 LINGQVLITFNLASKDQSTLYEPIKELDIMLSQIAAGVSVDIMPGTNDPANFALPQQPLN 309 Query: 1043 RCLFSGASTYNTFSSCPNPHQFDLDNVKCIGTSGQNIDDLYRYSDAKDRLEFMERTLKWR 1222 RCLF G+S YNTF SC NPH FD+DN++ +GTSGQNIDDL +YS+AK +L+F+ERTL+WR Sbjct: 310 RCLFPGSSPYNTFRSCTNPHSFDVDNIRFLGTSGQNIDDLGKYSEAKSKLDFVERTLRWR 369 Query: 1223 HLAPTAPNSLGCYPYTDKDPFLVETCPHVYFAGNQDKYETRLLKGTEKQQVRLISIPRFC 1402 HLAPTAPN+LGCYP+TD+DPFL+ETCPHVYF GNQDKY+ RL+KG+E Q VRLI IP+FC Sbjct: 370 HLAPTAPNTLGCYPFTDRDPFLIETCPHVYFVGNQDKYDNRLIKGSEGQLVRLICIPKFC 429 Query: 1403 ESGIAVMLNLRNLECSTLSFSTSFD 1477 E+GIAV +NLRNLEC TLSFST + Sbjct: 430 ETGIAVAVNLRNLECHTLSFSTQIN 454
>O93610:DPOD2_XENLA DNA polymerase subunit delta 2 - Xenopus laevis (African clawed frog)| Length = 463 Score = 327 bits (839), Expect = 7e-89 Identities = 174/423 (41%), Positives = 254/423 (60%), Gaps = 6/423 (1%) Frame = +2 Query: 215 YSNLDERYTIQGERYQGQQYSHIYYTRLHHMRTLLHALVPSR-KPHLPVTTVLGLEKGKD 391 YSN + + GER +QY+HIY TRL MR LL R + V + L+ G+ Sbjct: 32 YSNCSSIFRL-GERTFTRQYAHIYATRLEQMRPLLIKSAKQRWGDDIAVRKLCELQGGEK 90 Query: 392 CVLVGTLYKHMKLKPSILDEYSKERSAIPLVKPHNFMHSDDNLILEDESGRVALAGAIPP 571 C ++GTL+K M+L+PSIL E S+E + +P ++ D LILEDE R+ L GA Sbjct: 91 CCVIGTLFKSMELQPSILREISEEHNLLPQPARQKYISDSDELILEDELQRIKLEGATDV 150 Query: 572 AAYVTGVVVALHGKETSAGNFLVEDVMEAGLPPQSVLPCINEDKYXXXXXXXXXXXXTFN 751 VTG V+A+ G E AG F+VED LP QS LP ++ED++ + + Sbjct: 151 QQLVTGAVLAVLGAEEDAGKFVVEDFCLTSLPVQSPLPRLSEDRFVLLTSGLGLGGGSGD 210 Query: 752 PLQ-FQLLIDHITGHLGDENEQTIASKIVRVVVAGN----SVHIAPRFLNGQTVAAKDQP 916 L QLL+D +TG G E +Q A++I RV++AGN + + ++ K Q Sbjct: 211 SLMGLQLLLDLVTGQAGAEEDQGCAARISRVILAGNLLSENTQGKDSLNKAKYLSKKTQA 270 Query: 917 RIAEPIKELDIMLTQLVASLPVDIMPGCNDPANFSLPQQPLHRCLFSGASTYNTFSSCPN 1096 E +K LD +L Q+ S+ VD+MPG DP N+ LPQQPLHRC+F ++ Y+T N Sbjct: 271 ASVEAVKMLDEILLQMSGSVSVDVMPGAFDPTNYILPQQPLHRCMFPQSALYSTLQLVTN 330 Query: 1097 PHQFDLDNVKCIGTSGQNIDDLYRYSDAKDRLEFMERTLKWRHLAPTAPNSLGCYPYTDK 1276 P++ ++D V+ +GTSGQNI D+Y+YS +D L+ +E TL+ HL PTAP++LGCYP+ Sbjct: 331 PYEAEIDGVRFLGTSGQNIGDIYKYSSMQDYLDILEWTLQVGHLCPTAPDTLGCYPFYKS 390 Query: 1277 DPFLVETCPHVYFAGNQDKYETRLLKGTEKQQVRLISIPRFCESGIAVMLNLRNLECSTL 1456 DPF+++ CPHVYF G+ K+ + + G E Q+V L+++P FC + A ++NLR L+C + Sbjct: 391 DPFILQNCPHVYFCGSAPKFSCKEVTGAEGQRVLLLTVPEFCSTQTACLVNLRTLQCQPI 450 Query: 1457 SFS 1465 SFS Sbjct: 451 SFS 453
>O35654:DPOD2_MOUSE DNA polymerase subunit delta 2 - Mus musculus (Mouse)| Length = 469 Score = 325 bits (833), Expect = 4e-88 Identities = 176/428 (41%), Positives = 254/428 (59%), Gaps = 9/428 (2%) Frame = +2 Query: 209 ADYSNLDERYTIQGERYQGQQYSHIYYTRLHHMRTLLHALVPSRKPH----LPVTTVLGL 376 A Y+N + + + GER +QY+HIY TRL MR L V + H + V + L Sbjct: 30 ATYTNSSQPFRL-GERSFNRQYAHIYATRLIQMRPFL---VTRAQQHWGSRVEVKKLCEL 85 Query: 377 EKGKDCVLVGTLYKHMKLKPSILDEYSKERSAIPLVKPHNFMHSDDNLILEDESGRVALA 556 + G+ C +VGTL+K M L+PSIL E S+E + +P ++H DD L+LEDE R+ L Sbjct: 86 QPGEQCCVVGTLFKAMSLQPSILREISEEHNLVPQPPRSKYIHPDDELVLEDELQRIKLK 145 Query: 557 GAIPPAAYVTGVVVALHGKETSAGNFLVEDVMEAGLPPQSVLPCINEDKYXXXXXXXXXX 736 G I + VTG V+A+ G G F VED A L PQ +P ++ D++ Sbjct: 146 GTIDVSKLVTGTVLAVLGSAKDDGRFQVEDHCFADLAPQKPVPPLDTDRFVLLVSGLGLG 205 Query: 737 XXTFNPLQ-FQLLIDHITGHLGDENEQTIASKIVRVVVAGN----SVHIAPRFLNGQTVA 901 L QLL+D +TG LGDE EQ A+ + RV++AGN + + + Sbjct: 206 GGGGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHNTQSRDSINKAKYLT 265 Query: 902 AKDQPRIAEPIKELDIMLTQLVASLPVDIMPGCNDPANFSLPQQPLHRCLFSGASTYNTF 1081 K Q E +K LD +L QL AS+PVD+MPG DP N++LPQQPLH C+F A+ Y+T Sbjct: 266 KKTQAASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTL 325 Query: 1082 SSCPNPHQFDLDNVKCIGTSGQNIDDLYRYSDAKDRLEFMERTLKWRHLAPTAPNSLGCY 1261 NP+Q +D V+ +GTSGQN+ D++RYS +D LE +E TL+ RH++PTAP++LGCY Sbjct: 326 QLVTNPYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCY 385 Query: 1262 PYTDKDPFLVETCPHVYFAGNQDKYETRLLKGTEKQQVRLISIPRFCESGIAVMLNLRNL 1441 P+ DPF+ CPHVYF GN + +++++G E Q V L+++P F + A ++NLR+L Sbjct: 386 PFYKTDPFIFPECPHVYFCGNTPSFGSKIIRGPEDQVVLLVAVPDFSSTQTACLVNLRSL 445 Query: 1442 ECSTLSFS 1465 C +SF+ Sbjct: 446 ACQPISFA 453
>P49005:DPOD2_HUMAN DNA polymerase subunit delta 2 - Homo sapiens (Human)| Length = 469 Score = 325 bits (832), Expect = 5e-88 Identities = 176/425 (41%), Positives = 250/425 (58%), Gaps = 6/425 (1%) Frame = +2 Query: 209 ADYSNLDERYTIQGERYQGQQYSHIYYTRLHHMRTLLHALVPSR-KPHLPVTTVLGLEKG 385 A Y+N + + + GER +QY+HIY TRL MR L + V + L+ Sbjct: 30 ATYTNSSQPFRL-GERSFSRQYAHIYATRLIQMRPFLENRAQQHWGSGVGVKKLCELQPE 88 Query: 386 KDCVLVGTLYKHMKLKPSILDEYSKERSAIPLVKPHNFMHSDDNLILEDESGRVALAGAI 565 + C +VGTL+K M L+PSIL E S+E + +P ++H DD L+LEDE R+ L G I Sbjct: 89 EKCCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDDELVLEDELQRIKLKGTI 148 Query: 566 PPAAYVTGVVVALHGKETSAGNFLVEDVMEAGLPPQSVLPCINEDKYXXXXXXXXXXXXT 745 + VTG V+A+ G G FLVED A L PQ P ++ D++ Sbjct: 149 DVSKLVTGTVLAVFGSVRDDGKFLVEDYCFADLAPQKPAPPLDTDRFVLLVSGLGLGGGG 208 Query: 746 FNPLQ-FQLLIDHITGHLGDENEQTIASKIVRVVVAGN----SVHIAPRFLNGQTVAAKD 910 L QLL+D +TG LGDE EQ A+ + RV++AGN S + + K Sbjct: 209 GESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHSTQSRDSINKAKYLTKKT 268 Query: 911 QPRIAEPIKELDIMLTQLVASLPVDIMPGCNDPANFSLPQQPLHRCLFSGASTYNTFSSC 1090 Q E +K LD +L QL AS+PVD+MPG DP N++LPQQPLH C+F A+ Y+T Sbjct: 269 QAASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQLV 328 Query: 1091 PNPHQFDLDNVKCIGTSGQNIDDLYRYSDAKDRLEFMERTLKWRHLAPTAPNSLGCYPYT 1270 NP+Q +D V+ +GTSGQN+ D++RYS +D LE +E TL+ RH++PTAP++LGCYP+ Sbjct: 329 TNPYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYPFY 388 Query: 1271 DKDPFLVETCPHVYFAGNQDKYETRLLKGTEKQQVRLISIPRFCESGIAVMLNLRNLECS 1450 DPF+ CPHVYF GN + +++++G E Q V L+++P F + A ++NLR+L C Sbjct: 389 KTDPFIFPECPHVYFCGNTPSFGSKIIRGPEDQTVLLVTVPDFSATQTACLVNLRSLACQ 448 Query: 1451 TLSFS 1465 +SFS Sbjct: 449 PISFS 453
>Q6AXY4:DPOD2_RAT DNA polymerase subunit delta 2 - Rattus norvegicus (Rat)| Length = 469 Score = 324 bits (831), Expect = 6e-88 Identities = 175/425 (41%), Positives = 251/425 (59%), Gaps = 6/425 (1%) Frame = +2 Query: 209 ADYSNLDERYTIQGERYQGQQYSHIYYTRLHHMRTLLHALVPSR-KPHLPVTTVLGLEKG 385 A Y+N + + + GER +QY+HIY TRL MR L + + V + L+ G Sbjct: 30 ATYTNSSQPFRL-GERSFNRQYAHIYATRLIQMRPFLVSRAQQHWGSQVEVKKLCELQPG 88 Query: 386 KDCVLVGTLYKHMKLKPSILDEYSKERSAIPLVKPHNFMHSDDNLILEDESGRVALAGAI 565 + C +VGTL+K M L+PSIL E S+E + IP ++H DD L+LEDE R+ L G I Sbjct: 89 EQCCVVGTLFKAMPLQPSILREISEEHNLIPQPPRSKYIHPDDELVLEDELQRIKLKGTI 148 Query: 566 PPAAYVTGVVVALHGKETSAGNFLVEDVMEAGLPPQSVLPCINEDKYXXXXXXXXXXXXT 745 + VTG V+A+ G G F VED A L PQ+ +P ++ D++ Sbjct: 149 DVSKLVTGTVLAVFGSVKDDGKFQVEDHCFADLAPQNPVPPLDTDRFVLLVSGLGLGGGG 208 Query: 746 FNPLQ-FQLLIDHITGHLGDENEQTIASKIVRVVVAGN----SVHIAPRFLNGQTVAAKD 910 L QLL+D +TG LGDE EQ A+ + RV++AGN + + + K Sbjct: 209 GESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHNTQSRDSINKAKYLTKKT 268 Query: 911 QPRIAEPIKELDIMLTQLVASLPVDIMPGCNDPANFSLPQQPLHRCLFSGASTYNTFSSC 1090 Q E +K LD +L QL AS+PVD+MPG DP N++LPQQPLH C+F A+ Y T Sbjct: 269 QAASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYATLQLV 328 Query: 1091 PNPHQFDLDNVKCIGTSGQNIDDLYRYSDAKDRLEFMERTLKWRHLAPTAPNSLGCYPYT 1270 NP+Q +D V+ +GTSGQN+ D++RYS +D LE +E TL+ RH++PTAP++LGCYP+ Sbjct: 329 TNPYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYPFY 388 Query: 1271 DKDPFLVETCPHVYFAGNQDKYETRLLKGTEKQQVRLISIPRFCESGIAVMLNLRNLECS 1450 DPF+ CPHVYF GN + +++++G E Q V L+++P F + A ++NLR L C Sbjct: 389 KTDPFIFAECPHVYFCGNTPSFGSKVIRGPEDQAVLLVAVPDFSSTQTACLVNLRGLTCQ 448 Query: 1451 TLSFS 1465 +SF+ Sbjct: 449 PISFA 453
>P49004:DPOD2_BOVIN DNA polymerase subunit delta 2 - Bos taurus (Bovine)| Length = 469 Score = 324 bits (830), Expect = 8e-88 Identities = 177/423 (41%), Positives = 252/423 (59%), Gaps = 6/423 (1%) Frame = +2 Query: 215 YSNLDERYTIQGERYQGQQYSHIYYTRLHHMRTLLHALVPSR-KPHLPVTTVLGLEKGKD 391 Y+N + + + GER +QY+HIY TRL MR L + R + V + L+ G+ Sbjct: 32 YTNSSQPFRL-GERSFSRQYAHIYATRLIQMRPFLVSRAQQRWGSGVLVKKLCELQPGEK 90 Query: 392 CVLVGTLYKHMKLKPSILDEYSKERSAIPLVKPHNFMHSDDNLILEDESGRVALAGAIPP 571 C +VGTL+K M L+PSIL E S+E + +P ++H DD LILEDE R+ L G I Sbjct: 91 CCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDDELILEDELQRIKLEGTIDV 150 Query: 572 AAYVTGVVVALHGKETSAGNFLVEDVMEAGLPPQSVLPCINEDKYXXXXXXXXXXXXTFN 751 + VTG V+A+ G G FLVED AGL PQ ++ D++ Sbjct: 151 SKLVTGTVLAVLGSAGDDGKFLVEDHCFAGLAPQKPACPLDTDRFVLLVSGLGLGGGGGE 210 Query: 752 PLQ-FQLLIDHITGHLGDENEQTIASKIVRVVVAGN----SVHIAPRFLNGQTVAAKDQP 916 L QLL+D +TG LGDE EQ A+ + RV++AGN + + + K Q Sbjct: 211 SLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHNTQSRDSINKAKYLTKKTQA 270 Query: 917 RIAEPIKELDIMLTQLVASLPVDIMPGCNDPANFSLPQQPLHRCLFSGASTYNTFSSCPN 1096 E +K LD +L QL AS+PVD+MPG DP N++LPQQPLH C+F A+ Y+T N Sbjct: 271 ASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQLVTN 330 Query: 1097 PHQFDLDNVKCIGTSGQNIDDLYRYSDAKDRLEFMERTLKWRHLAPTAPNSLGCYPYTDK 1276 P+Q +D V+ +GTSGQN+ D++RYS +D LE +E TL+ RH++PTAP++LGCYP+ Sbjct: 331 PYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLQVRHISPTAPDTLGCYPFYKT 390 Query: 1277 DPFLVETCPHVYFAGNQDKYETRLLKGTEKQQVRLISIPRFCESGIAVMLNLRNLECSTL 1456 DPF+ CPHVYF GN + +++++G E Q V L+++P F + A ++NLR+L C + Sbjct: 391 DPFIFPECPHVYFCGNTPSFGSKIIQGPEDQTVLLVAVPDFSTTQTACLVNLRSLACQPI 450 Query: 1457 SFS 1465 SFS Sbjct: 451 SFS 453
>Q9W088:DPOD2_DROME DNA polymerase delta small subunit - Drosophila melanogaster (Fruit| fly) Length = 431 Score = 265 bits (678), Expect = 3e-70 Identities = 155/428 (36%), Positives = 221/428 (51%), Gaps = 6/428 (1%) Frame = +2 Query: 200 RKQADYSNLDERYTIQGERYQGQQYSHIYYTRLHHMRTLLHALVPSR---KPHLPVTTVL 370 R + Y NL + ++G YQ +Q+ H+Y RL M LL L + K + L Sbjct: 4 RLETKYENLSSIFRLKGHDYQ-KQFFHLYAHRLAEMTRLLTPLAQKKWGNKEPIKKLCEL 62 Query: 371 GLEKGKDCVLVGTLYKHMKLKPSILDEYSKERSAIPLVKPHNFMHSDDNLILEDESGRVA 550 E+ C+L+GT++KH KPSIL + S+E P N+ +D ++LEDE RV Sbjct: 63 RGEQDVHCILIGTIFKHQAHKPSILRDISEENQLAPQPPRQNYSDPEDKIVLEDELQRVR 122 Query: 551 LAGAIPPAAYVTGVVVALHGKETSAGNFLVEDVMEAGLPPQSVLPCINEDKYXXXXXXXX 730 L G + TGVV A G S G F VED++ PQ L I + Sbjct: 123 LQGKLNGQLLATGVVCAALGGTDSDGFFNVEDILFYESGPQKPLAPIKRSRLLVLASGLD 182 Query: 731 XXXXTFNPLQFQLLIDHITGHLGDENEQTIASKIVRVVVAGNSVHIAPRFLNGQTVAAKD 910 L + G LG+ E A +VR++VAGNSV + A+ Sbjct: 183 QLQAHKFVEALNLFQYWLAGSLGNNKE---AGSMVRLIVAGNSVRASAMAHVPTLQVART 239 Query: 911 QPRI---AEPIKELDIMLTQLVASLPVDIMPGCNDPANFSLPQQPLHRCLFSGASTYNTF 1081 Q + + +LD SLPVDIMPG DPANF LPQQP H+C+F A+ TF Sbjct: 240 QANANDTVQAVSQLDQWFASWARSLPVDIMPGPYDPANFMLPQQPFHKCMFPQAAQLATF 299 Query: 1082 SSCPNPHQFDLDNVKCIGTSGQNIDDLYRYSDAKDRLEFMERTLKWRHLAPTAPNSLGCY 1261 + NP+ LD +GTSGQN+ DL R + LE + TL W H+APTAP++L CY Sbjct: 300 QAVTNPYSCRLDEALVVGTSGQNVSDLLRSTSLDSALEALRCTLTWGHVAPTAPDTLACY 359 Query: 1262 PYTDKDPFLVETCPHVYFAGNQDKYETRLLKGTEKQQVRLISIPRFCESGIAVMLNLRNL 1441 PY + DPF++ CPHVY+AGN + + T L +G+E ++ RL+ +P F ++ +++L L Sbjct: 360 PYIESDPFILRECPHVYYAGNCESFATELHEGSEGKRTRLVCVPSFSKTQSVAVVDLDTL 419 Query: 1442 ECSTLSFS 1465 +C ++FS Sbjct: 420 DCRMVNFS 427
>P46957:DPOD2_YEAST DNA polymerase delta small subunit - Saccharomyces cerevisiae| (Baker's yeast) Length = 487 Score = 214 bits (546), Expect = 7e-55 Identities = 146/449 (32%), Positives = 222/449 (49%), Gaps = 47/449 (10%) Frame = +2 Query: 251 ERYQGQQYSHIYYTRLHHMRTLLHALVPSR---------KPHLPVTTVLGLEKGKDCVLV 403 +R G QY HIY RL R + R + L VL ++ + C V Sbjct: 46 KRDYGSQYYHIYQYRLKTFRERVLKECDKRWDAGFTLNGQLVLKKDKVLDIQGNQPCWCV 105 Query: 404 GTLYKHMKLKPSILDEYSKERSAIP-LVKPHNFMHS-DDNLILEDESGRVALAGA-IPPA 574 G++Y MK KP++LDE + P L K + D ++LEDESGRV L G I Sbjct: 106 GSIYCEMKYKPNVLDEVINDTYGAPDLTKSYTDKEGGSDEIMLEDESGRVLLVGDFIRST 165 Query: 575 AYVTGVVVALHGKETSAGNFLVEDVMEAGLPPQSVLP-----CINEDKYXXXXXXXXXXX 739 ++TGVVV + G E AG F V D+ PQ+ P C K Sbjct: 166 PFITGVVVGILGMEAEAGTFQVLDICYPTPLPQNPFPAPIATCPTRGKIALVSGLNLNNT 225 Query: 740 XTFNPLQFQLLIDHITGHLGDENEQTIASKIVRVVVAGNSVHIAPRFLNGQTVAAKDQPR 919 L+ ++L + + G + ++ + S I R+++ GNSV + +N KD+ Sbjct: 226 SPDRLLRLEILREFLMGRINNKIDDI--SLIGRLLICGNSVDFDIKSVN------KDELM 277 Query: 920 IAEPIKELDIMLTQLVASLPVDIMPGCNDPANFSLPQQPLHRCLFS-------GASTYNT 1078 I+ + E L ++ S+ VDIMPG NDP++ SLPQQP H+ LF S Sbjct: 278 IS--LTEFSKFLHNILPSISVDIMPGTNDPSDKSLPQQPFHKSLFDKSLESYFNGSNKEI 335 Query: 1079 FSSCPNPHQFDLDNVKCIGTSGQNIDDLYRY-----------------------SDAKDR 1189 + NP++F + V + SG+NI+D+ +Y D + R Sbjct: 336 LNLVTNPYEFSYNGVDVLAVSGKNINDICKYVIPSNDNGESENKVEEGESNDFKDDIEHR 395 Query: 1190 LEFMERTLKWRHLAPTAPNSLGCYPYTDKDPFLVETCPHVYFAGNQDKYETRLLKGTEKQ 1369 L+ ME T+KW+++APTAP++L CYPYTDKDPF+++ PHVY NQ + TR+++ K Sbjct: 396 LDLMECTMKWQNIAPTAPDTLWCYPYTDKDPFVLDKWPHVYIVANQPYFGTRVVEIGGK- 454 Query: 1370 QVRLISIPRFCESGIAVMLNLRNLECSTL 1456 +++IS+P F +G+ ++L+L LE T+ Sbjct: 455 NIKIISVPEFSSTGMIILLDLETLEAETV 483
>P87324:DPOD2_SCHPO DNA polymerase subunit delta 2 - Schizosaccharomyces pombe (Fission| yeast) Length = 462 Score = 201 bits (510), Expect = 1e-50 Identities = 131/425 (30%), Positives = 213/425 (50%), Gaps = 26/425 (6%) Frame = +2 Query: 266 QQYSHIYYTRLHHMRTLLHALVPSRKPHLP-VTTVLGLEKGKDCVLVGTLYKHMKLKPSI 442 QQY+ IY+ RL +R + + P + VL ++ +DC +V T Y LKP++ Sbjct: 27 QQYASIYFARLTALRPRITEAASKKWPDKQRLERVLDVKSDEDCWVVATAYMTTALKPNV 86 Query: 443 LDEYSKERSAI------PLVKPHNFMHSDDNLILEDESGRVALAGA-IPPAAYVTGVVVA 601 +++ ++ + + P V P + D LED+ GR+ +G+ + A VTGVV+A Sbjct: 87 MNDVTQLHTIVTTTEESPYVSPEDAASGDIEYALEDDYGRIDCSGSFLYDAGVVTGVVLA 146 Query: 602 LHGKETSAGNFLVEDVMEAGLPPQSVLPCINEDK----YXXXXXXXXXXXXTFNPLQFQL 769 + G E G F+V DV G+ S+ +E + Y +Q Sbjct: 147 VLGHEDEQGRFVVVDVCFPGIFSHSIPMTTDESQAQPEYIAAVSGLGLSNDGIEGIQVHQ 206 Query: 770 LIDHITGHLGDENEQTIASKIVRVVVAGN----SVHIAPRFLNGQTVAAKDQPRIA---- 925 L+D + G L + + S I R+++ GN S+ IA + K R Sbjct: 207 LVDFLRGTLPHVSSFS-PSSIKRLIILGNCLAPSIEIADSASASVPIGKKKVKRYGYDTS 265 Query: 926 ----EPIKELDIMLTQLVASLPVDIMPGCNDPANFSLPQQPLHRCLFSGASTY--NTFSS 1087 P +LD L Q+ +S+ V +MPG D ++ LPQQPLH L + + + ++ + Sbjct: 266 AYNPNPTFQLDNFLDQVCSSIDVTLMPGPYDYSSTILPQQPLHPALLTKSKVWLGSSLQT 325 Query: 1088 CPNPHQFDLDNVKCIGTSGQNIDDLYRYSDAKDRLEFMERTLKWRHLAPTAPNSLGCYPY 1267 NP L N + TSGQNI+DL +Y K L+ ME TL W H+ PT+P++L CYP+ Sbjct: 326 VTNPTWLSLGNHFVLATSGQNINDLRKYHPKKSSLQCMENTLLWNHITPTSPDTLWCYPF 385 Query: 1268 TDKDPFLVETCPHVYFAGNQDKYETRLLKGTEKQQVRLISIPRFCESGIAVMLNLRNLEC 1447 TDKD F++E P +Y GNQ K+ + + E +++L+S+P F ++G+ V++N+ L Sbjct: 386 TDKDTFVMEEMPDLYLCGNQPKFGCKTVI-NEGNRIQLVSVPEFRKTGVLVLINMHTLNV 444 Query: 1448 STLSF 1462 + F Sbjct: 445 EIIQF 449
>Q19366:DPOD2_CAEEL Probable DNA polymerase delta small subunit - Caenorhabditis elegans| Length = 451 Score = 119 bits (298), Expect = 4e-26 Identities = 110/450 (24%), Positives = 197/450 (43%), Gaps = 29/450 (6%) Frame = +2 Query: 212 DYSNLDERYTIQGERYQG---QQYSHIYYTRLHHM--RTLLHALVPSRKPHLPVTTVLGL 376 +Y N+ +RY + + +G +QY +Y RL + R L +A K + + Sbjct: 10 NYKNVSDRYILTEKDKKGAFTRQYFEVYEARLKELKPRILENAEREIGKGKFTHSQLSDA 69 Query: 377 EKGKDCVLVGTLYKHMKLKPSIL-----------DEYSKERSAIPLVKPHNFMHSDDNLI 523 ++ ++ +VG + K + +PSIL D+Y ++ + + + +D + Sbjct: 70 KQDEEIFVVGVIVKRIAARPSILKSLLNEDKVAYDDYEEDAEEDEVKRYAGSI--EDRIE 127 Query: 524 LEDESGRVALAGAIPPAAYVTGVVVALHGKETSAGNFLVEDVMEAGLP-PQSVLP--CIN 694 LE + V L G I TG V + GK G F V ++ + P+ V I Sbjct: 128 LESDKQTVRLEGNISMDECATGCCVGVLGKLGKEGVFHVNRLVWPSVKVPKKVAVDGTIA 187 Query: 695 EDKYXXXXXXXXXXXXTFNPLQFQLLIDHITGHLGDENEQTIASKIVRVVVAGNSVHIAP 874 T + L+F + D + +G+EN+ I R+VV G V Sbjct: 188 FVSGLDLTGDLEDDRLTISGLEF--MADWMNVQVGNENQ---CPPIDRLVVIGPLVETKS 242 Query: 875 RFLNGQTVAAKDQPRIAEPIKELDIMLT-----QLVASLP----VDIMPGCNDPANFSLP 1027 + Q+V AE ++T +A P VD+ PG DP + P Sbjct: 243 NGCDVQSVVRTLTLSRAEKHSSTASLITVDKIINSIAEKPLVNTVDVTPGVGDPCSSMWP 302 Query: 1028 QQPLHR-CLFSGASTYNTFSSCPNPHQFDLDNVKCIGTSGQNIDDLYRYSDAKDRLEFME 1204 P+HR CL + + NP++F+++ ++ + SG+N+ +L R S + +E Sbjct: 303 LPPIHRVCLPRCGMSDKKVNLVTNPYEFEVNGLRVMTMSGENVSELLRTSLKWTGADAIE 362 Query: 1205 RTLKWRHLAPTAPNSLGCYPYTDKDPFLVETCPHVYFAGNQDKYETRLLKGTEKQQVRLI 1384 +KW+H+AP P++L +P ++DP +++ PHV GNQ E R + + ++ Sbjct: 363 NIIKWQHVAPNCPDTLDAFPVAERDPLIMDITPHVIICGNQPHAEFRHIP-IDGSNCLVV 421 Query: 1385 SIPRFCESGIAVMLNLRNLECSTLSFSTSF 1474 +P+F ++ +A LNL +L +F F Sbjct: 422 CLPKFSKTRVACFLNLSDLSLKWQNFDHQF 451
>O57863:DP2S_PYRHO DNA polymerase II small subunit - Pyrococcus horikoshii| Length = 622 Score = 50.1 bits (118), Expect = 3e-05 Identities = 76/380 (20%), Positives = 147/380 (38%), Gaps = 14/380 (3%) Frame = +2 Query: 266 QQYSHIYYTRLHHMRTLLHALVPSRKPHLPVTTVLGLEKGK------DCVLVGTLYKHMK 427 + Y+ ++ +RL +R +L + + V+ V+ ++K K + ++G + + Sbjct: 229 EAYASLFRSRLRKLRRIL-------RENPEVSNVIDIKKLKYVKGDEEVTIIGLVNSKKE 281 Query: 428 LKPSILDEYSKERSAIPLVKPHNFMHSDDNLILEDESGRVALAGAIPPAAYVTGVVVALH 607 ++ E + + + P + E R AL +P A VVA Sbjct: 282 TSKGLIFEVEDQTDRVKVFLPK-----------DSEDYREALK-VLPDA------VVAFK 323 Query: 608 GKETSAGNFLVEDVMEAGLPP-QSVLPCINEDKYXXXXXXXXXXXXTFNPLQFQLLIDHI 784 G + G F +P + P + E Y F F ++ + Sbjct: 324 GVYSKRGIFFANRFYLPDVPLYRKQKPPLEEKVYAVLTSDIHVGSKEFCEKAFIKFLEWL 383 Query: 785 TGHLGDENEQTIASKIVRVVVAGNSVH---IAPRFLNGQTVAAKDQPRIAEPIKELDIML 955 G++ + E+ I S+I +++AG+ V I P + + P I + + L +L Sbjct: 384 NGYVESKEEEEIVSRIRYLIIAGDVVDGIGIYPGQYSDLII-----PDIFDQYEALANLL 438 Query: 956 TQLVASLPVDIMPGCNDPANFSLPQQPLHRCLFSGASTYNTFSSCPNPHQFDLDNVKCIG 1135 + + + + I PG +D A ++PQ + NP L + Sbjct: 439 SNVPKHITIFIGPGNHDAARPAIPQPEFYEEYAKPLYKLKNTVIISNPAVIRLHGRDFLI 498 Query: 1136 TSGQNIDDLYRY----SDAKDRLEFMERTLKWRHLAPTAPNSLGCYPYTDKDPFLVETCP 1303 G+ I+D+ + + K L +E LK RHLAPT + P +D ++E P Sbjct: 499 AHGRGIEDVVSFVPGLTHHKPGLPMVE-LLKMRHLAPTFGGKVPIAP-DPEDLLVIEEVP 556 Query: 1304 HVYFAGNQDKYETRLLKGTE 1363 + G+ Y+T + +G + Sbjct: 557 DLVQMGHVHVYDTAVYRGVQ 576
>Q9V2F3:DP2S_PYRAB DNA polymerase II small subunit - Pyrococcus abyssi| Length = 619 Score = 47.8 bits (112), Expect = 1e-04 Identities = 56/265 (21%), Positives = 103/265 (38%), Gaps = 8/265 (3%) Frame = +2 Query: 593 VVALHGKETSAGNFLVEDVMEAGLPP-QSVLPCINEDKYXXXXXXXXXXXXTFNPLQFQL 769 VVA G + G F +P + P + E Y F F Sbjct: 316 VVAFKGFYSKKGIFFANKFYLPDVPLYRKQKPPLEEKVYAILISDIHVGSREFCEKAFLK 375 Query: 770 LIDHITGHLGDENEQTIASKIVRVVVAG---NSVHIAPRFLNGQTVAAKDQPRIAEPIKE 940 ++ + GH+ + E+ I S++ +++AG + + I P + + P I + + Sbjct: 376 FLEWLNGHVESKEEEEIVSRVKYLIIAGDVVDGIGIYPGQYSDLVI-----PDIFDQYEA 430 Query: 941 LDIMLTQLVASLPVDIMPGCNDPANFSLPQQPLHRCLFSGASTYNTFSSCPNPHQFDLDN 1120 L +L + + + I PG +D A ++PQ ++ NP L Sbjct: 431 LANLLANVPEHITMFIGPGNHDAARPAIPQPEFYKEYAKPIYKLKNAIIISNPAVIRLHG 490 Query: 1121 VKCIGTSGQNIDDLYRY----SDAKDRLEFMERTLKWRHLAPTAPNSLGCYPYTDKDPFL 1288 + G+ I+D+ + + K L +E LK RHLAPT + P +D + Sbjct: 491 RDFLIAHGRGIEDVVSFVPGLTHHKPGLPMVE-LLKMRHLAPTFGGKVPIAP-DPEDLLV 548 Query: 1289 VETCPHVYFAGNQDKYETRLLKGTE 1363 +E P + G+ Y+ + +G + Sbjct: 549 IEEVPDLVQMGHVHVYDAVVYRGVQ 573
>O27456:DP2S_METTH DNA polymerase II small subunit - Methanobacterium| thermoautotrophicum Length = 482 Score = 47.8 bits (112), Expect = 1e-04 Identities = 76/344 (22%), Positives = 139/344 (40%), Gaps = 13/344 (3%) Frame = +2 Query: 332 PSRKPHLPVTTVLGLEKGKDCV-LVGTL--YKHMKLKPSILDEYSKERSAIPLVKPHNFM 502 P K H+P+ + G G+D V ++G + ++ K I+ E + I +V + Sbjct: 121 PELKGHIPIADLRG---GEDVVSIIGMVNDVRNTKNNHRII-ELEDDTGEISVV-----V 171 Query: 503 HSDDNLILEDESGRVALAGAIPPAAYVTGVVVALHGKETSAGNFLV-EDVMEAGLPPQSV 679 H++++ + E V VV +HG T G F+V ++ G+P Sbjct: 172 HNENHKLFEKSE------------KIVRDEVVGVHG--TKKGRFVVASEIFHPGVPR--- 214 Query: 680 LPCINE---DKYXXXXXXXXXXXXTFNPLQFQLLIDHITGHLGDENEQTIASKIVRVVVA 850 I E D TF F + I G G E ++++A+ + +VVA Sbjct: 215 ---IQEKEMDFSVAFISDVHIGSQTFLEDAFMKFVKWINGDFGSEEQRSLAADVKYLVVA 271 Query: 851 GNSVH---IAPRFLNGQTVAAKDQPRIAEPIKELDIMLTQLVASLPVDIMPGCNDPANFS 1021 G+ V I P + + +D I E +E + + + + + ++PG +D + + Sbjct: 272 GDIVDGIGIYPG--QEKELLIRD---IHEQYEEAARLFGDIRSDIKIVMIPGNHDSSRIA 326 Query: 1022 LPQQPLHRCLFSGASTYNTFSSCPNPHQFDLDNVKCIGTSGQNIDDLYRYSD--AKDRLE 1195 PQ + + NP LD V+ + G++ DD+ + + +R + Sbjct: 327 EPQPAIPEEYAKSLYSIRNIEFLSNPSLVSLDGVRTLIYHGRSFDDMAMSVNGLSHERSD 386 Query: 1196 -FMERTLKWRHLAPTAPNSLGCYPYTDKDPFLVETCPHVYFAGN 1324 ME L+ RHLAP + D +++ PHV G+ Sbjct: 387 LIMEELLEKRHLAPIYGERTPLASEIE-DHLVIDEVPHVLHTGH 429
>P81412:DP2S_PYRFU DNA polymerase II small subunit - Pyrococcus furiosus| Length = 613 Score = 41.6 bits (96), Expect = 0.011 Identities = 44/208 (21%), Positives = 87/208 (41%), Gaps = 7/208 (3%) Frame = +2 Query: 761 FQLLIDHITGHLGDENEQTIASKIVRVVVAGN---SVHIAPRFLNGQTVAAKDQPRIAEP 931 F ++ + G++ + E+ I S++ +++AG+ V + P T+ P I + Sbjct: 367 FIKFLEWLNGNVETKEEEEIVSRVKYLIIAGDVVDGVGVYPGQYADLTI-----PDIFDQ 421 Query: 932 IKELDIMLTQLVASLPVDIMPGCNDPANFSLPQQPLHRCLFSGASTYNTFSSCPNPHQFD 1111 + L +L+ + + + I PG +D A ++PQ ++ NP Sbjct: 422 YEALANLLSHVPKHITMFIAPGNHDAARQAIPQPEFYKEYAKPIYKLKNAVIISNPAVIR 481 Query: 1112 LDNVKCIGTSGQNIDDLY----RYSDAKDRLEFMERTLKWRHLAPTAPNSLGCYPYTDKD 1279 L + G+ I+D+ + K L +E LK RH+AP + P +D Sbjct: 482 LHGRDFLIAHGRGIEDVVGSVPGLTHHKPGLPMVE-LLKMRHVAPMFGGKVPIAP-DPED 539 Query: 1280 PFLVETCPHVYFAGNQDKYETRLLKGTE 1363 ++E P V G+ Y+ + +G + Sbjct: 540 LLVIEEVPDVVHMGHVHVYDAVVYRGVQ 567
>P19486:EF1A_THEAC Elongation factor 1-alpha - Thermoplasma acidophilum| Length = 424 Score = 36.6 bits (83), Expect = 0.34 Identities = 16/43 (37%), Positives = 28/43 (65%) Frame = +2 Query: 335 SRKPHLPVTTVLGLEKGKDCVLVGTLYKHMKLKPSILDEYSKE 463 S+KPHL + T+ ++ GK ++ LY+H ++ I++EY KE Sbjct: 3 SQKPHLNLITIGHVDHGKSTLVGRLLYEHGEIPAHIIEEYRKE 45
>Q99466:NOTC4_HUMAN Neurogenic locus notch homolog protein 4 precursor - Homo sapiens| (Human) Length = 2003 Score = 35.0 bits (79), Expect = 0.99 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 2/62 (3%) Frame = +1 Query: 553 CRSHTSSSLCDWGCSSP--SWEGNKCWQLSC*RCYGGWPSSSICVALHK*GQVCCFCIGI 726 C + CD GCS P +W+G C L + G PS S C L + GQ C Sbjct: 1178 CEGRSGDGACDAGCSGPGGNWDGGDC-SLGVPDPWKGCPSHSRCWLLFRDGQCHPQCDSE 1236 Query: 727 KC 732 +C Sbjct: 1237 EC 1238
>Q979T1:EF1A_THEVO Elongation factor 1-alpha - Thermoplasma volcanium| Length = 424 Score = 35.0 bits (79), Expect = 0.99 Identities = 15/43 (34%), Positives = 28/43 (65%) Frame = +2 Query: 335 SRKPHLPVTTVLGLEKGKDCVLVGTLYKHMKLKPSILDEYSKE 463 S+KPHL + T+ ++ GK ++ L++H ++ I++EY KE Sbjct: 3 SQKPHLNLITIGHVDHGKSTLVGRLLFEHGEIPAHIIEEYRKE 45
>Q6L202:EF1A_PICTO Elongation factor 1-alpha - Picrophilus torridus| Length = 424 Score = 33.9 bits (76), Expect = 2.2 Identities = 14/43 (32%), Positives = 26/43 (60%) Frame = +2 Query: 335 SRKPHLPVTTVLGLEKGKDCVLVGTLYKHMKLKPSILDEYSKE 463 S KPH+ + + ++ GK ++ L++H ++ I+DEY KE Sbjct: 3 SEKPHMNLVIIGHVDHGKSTLVGRLLFEHGEIPQHIIDEYKKE 45
>Q5JRA6:MIA3_HUMAN Melanoma inhibitory activity protein 3 precursor - Homo sapiens| (Human) Length = 1907 Score = 32.0 bits (71), Expect = 8.4 Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 8/74 (10%) Frame = +2 Query: 884 NGQTVAAKDQPRIAEPIKELDIML--------TQLVASLPVDIMPGCNDPANFSLPQQPL 1039 N Q A ++P P++ +++ LVA+LP D+ PG P + LP +P+ Sbjct: 1126 NKQPETAAEEPASVTPLENAILLIYSFMFYLTKSLVATLPDDVQPG---PDFYGLPWKPV 1182 Query: 1040 HRCLFSGASTYNTF 1081 F G +++ F Sbjct: 1183 FITAFLGIASFAIF 1196
>Q6L8H1:KRA54_HUMAN Keratin-associated protein 5-4 - Homo sapiens (Human)| Length = 288 Score = 32.0 bits (71), Expect = 8.4 Identities = 21/59 (35%), Positives = 25/59 (42%) Frame = +1 Query: 541 KSCTCRSHTSSSLCDWGCSSPSWEGNKCWQLSC*RCYGGWPSSSICVALHK*GQVCCFC 717 +S C+ + S C C S S G+ C Q SC C SS CV VCC C Sbjct: 236 QSSCCKPYCCQSSCCKPCCSSSGCGSSCCQSSC--CNPCCSQSSCCV------PVCCQC 286 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 300,046,421 Number of extensions: 6665324 Number of successful extensions: 17174 Number of sequences better than 10.0: 21 Number of HSP's gapped: 17125 Number of HSP's successfully gapped: 21 Length of query: 581 Length of database: 100,686,439 Length adjustment: 119 Effective length of query: 462 Effective length of database: 68,045,334 Effective search space: 31436944308 Effective search space used: 31436944308 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)