ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf94a16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q9LRE5:DPOD2_ORYSJ DNA polymerase delta small subunit - Oryza sa... 766 0.0
2O48520:DPOD2_ARATH DNA polymerase delta small subunit - Arabidop... 611 e-174
3O93610:DPOD2_XENLA DNA polymerase subunit delta 2 - Xenopus laev... 327 7e-89
4O35654:DPOD2_MOUSE DNA polymerase subunit delta 2 - Mus musculus... 325 4e-88
5P49005:DPOD2_HUMAN DNA polymerase subunit delta 2 - Homo sapiens... 325 5e-88
6Q6AXY4:DPOD2_RAT DNA polymerase subunit delta 2 - Rattus norvegi... 324 6e-88
7P49004:DPOD2_BOVIN DNA polymerase subunit delta 2 - Bos taurus (... 324 8e-88
8Q9W088:DPOD2_DROME DNA polymerase delta small subunit - Drosophi... 265 3e-70
9P46957:DPOD2_YEAST DNA polymerase delta small subunit - Saccharo... 214 7e-55
10P87324:DPOD2_SCHPO DNA polymerase subunit delta 2 - Schizosaccha... 201 1e-50
11Q19366:DPOD2_CAEEL Probable DNA polymerase delta small subunit -... 119 4e-26
12O57863:DP2S_PYRHO DNA polymerase II small subunit - Pyrococcus h... 50 3e-05
13Q9V2F3:DP2S_PYRAB DNA polymerase II small subunit - Pyrococcus a... 48 1e-04
14O27456:DP2S_METTH DNA polymerase II small subunit - Methanobacte... 48 1e-04
15P81412:DP2S_PYRFU DNA polymerase II small subunit - Pyrococcus f... 42 0.011
16P19486:EF1A_THEAC Elongation factor 1-alpha - Thermoplasma acido... 37 0.34
17Q99466:NOTC4_HUMAN Neurogenic locus notch homolog protein 4 prec... 35 0.99
18Q979T1:EF1A_THEVO Elongation factor 1-alpha - Thermoplasma volca... 35 0.99
19Q6L202:EF1A_PICTO Elongation factor 1-alpha - Picrophilus torridus 34 2.2
20Q5JRA6:MIA3_HUMAN Melanoma inhibitory activity protein 3 precurs... 32 8.4
21Q6L8H1:KRA54_HUMAN Keratin-associated protein 5-4 - Homo sapiens... 32 8.4

>Q9LRE5:DPOD2_ORYSJ DNA polymerase delta small subunit - Oryza sativa subsp. japonica|
            (Rice)
          Length = 429
 Score =  766 bits (1979), Expect = 0.0
 Identities = 368/429 (85%), Positives = 398/429 (92%)
 Frame = +2

Query: 194  MERKQADYSNLDERYTIQGERYQGQQYSHIYYTRLHHMRTLLHALVPSRKPHLPVTTVLG 373
            MERKQA+YSNLDERY IQGE+YQGQQYSHIY+TRLHHMR LLHALVPS KPHLPVTTVLG
Sbjct: 1    MERKQAEYSNLDERYAIQGEKYQGQQYSHIYFTRLHHMRNLLHALVPSWKPHLPVTTVLG 60

Query: 374  LEKGKDCVLVGTLYKHMKLKPSILDEYSKERSAIPLVKPHNFMHSDDNLILEDESGRVAL 553
            LE+GKDC++VGTLYKHMKLKPSILDEYSKERSAIPLVKPHNFMH DD+LILEDESGRV L
Sbjct: 61   LEEGKDCIIVGTLYKHMKLKPSILDEYSKERSAIPLVKPHNFMHPDDHLILEDESGRVTL 120

Query: 554  AGAIPPAAYVTGVVVALHGKETSAGNFLVEDVMEAGLPPQSVLPCINEDKYXXXXXXXXX 733
            AGAIPPAAYVTGVV+ALHGKETSAGNFLVED++EAG+PPQ  LP INEDKY         
Sbjct: 121  AGAIPPAAYVTGVVIALHGKETSAGNFLVEDILEAGIPPQITLPSINEDKYVVFVSGLSI 180

Query: 734  XXXTFNPLQFQLLIDHITGHLGDENEQTIASKIVRVVVAGNSVHIAPRFLNGQTVAAKDQ 913
                FNPLQFQLLIDHITGHLGDENEQ+IAS IVRVVVAGNSVHI+PRF NGQ VA+KDQ
Sbjct: 181  GSEKFNPLQFQLLIDHITGHLGDENEQSIASNIVRVVVAGNSVHISPRFFNGQAVASKDQ 240

Query: 914  PRIAEPIKELDIMLTQLVASLPVDIMPGCNDPANFSLPQQPLHRCLFSGASTYNTFSSCP 1093
             RIAEPIKELDIMLTQLVASLPVD+MPG NDPANFSLPQQPLHRCLF+GA+TYNTFSSC 
Sbjct: 241  SRIAEPIKELDIMLTQLVASLPVDMMPGSNDPANFSLPQQPLHRCLFAGAATYNTFSSCS 300

Query: 1094 NPHQFDLDNVKCIGTSGQNIDDLYRYSDAKDRLEFMERTLKWRHLAPTAPNSLGCYPYTD 1273
            NPHQF+LD+V+ IGTSGQNIDDLY+YSDAKD+LEF+ERTL+WRHLAPTAPNSLGCYPYTD
Sbjct: 301  NPHQFELDSVRFIGTSGQNIDDLYKYSDAKDKLEFVERTLRWRHLAPTAPNSLGCYPYTD 360

Query: 1274 KDPFLVETCPHVYFAGNQDKYETRLLKGTEKQQVRLISIPRFCESGIAVMLNLRNLECST 1453
            KDPFLVE+CPHVYF GNQDKYET+LL+G EKQ+VRLI IPRFC+SG+AVMLNLRNLECST
Sbjct: 361  KDPFLVESCPHVYFVGNQDKYETQLLQGLEKQKVRLICIPRFCDSGVAVMLNLRNLECST 420

Query: 1454 LSFSTSFDA 1480
            LSFSTSFDA
Sbjct: 421  LSFSTSFDA 429



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>O48520:DPOD2_ARATH DNA polymerase delta small subunit - Arabidopsis thaliana (Mouse-ear|
            cress)
          Length = 456

 Score =  611 bits (1575), Expect = e-174
 Identities = 299/445 (67%), Positives = 355/445 (79%), Gaps = 18/445 (4%)
 Frame = +2

Query: 197  ERKQADYSNL-----------DERYTIQGERYQGQQYSHIYYTRLHHMRTLLHALVPSRK 343
            ERKQ+DY++L           DER+ IQ E Y+GQQYS IY+ RLH MRTLL++L P+ K
Sbjct: 10   ERKQSDYNSLVRTLLLYRLVQDERFEIQKEMYRGQQYSQIYFARLHLMRTLLYSLAPTWK 69

Query: 344  PHLPVTTVLGLEKGKDCVLVGTLYKHMKLKPSILDEYSKERSAIPLVKPHNFMHSDDNLI 523
             HLPV  VLGLEKGK+C++VGTL+KHMKLKP +LDEYSKERS  PLVKPHNFMH DDNLI
Sbjct: 70   SHLPVCKVLGLEKGKECIIVGTLFKHMKLKPCVLDEYSKERSVTPLVKPHNFMHPDDNLI 129

Query: 524  LEDESGRVALAG-AIPPAAYVTGVVVALHGKETSAGNFLVEDVMEAGLPPQSVLPC-INE 697
            LEDESGRV LAG A+ PA YVTGVVVALHGKET+AG F VEDV+EAGLPPQ   P  + E
Sbjct: 130  LEDESGRVKLAGSALSPAIYVTGVVVALHGKETNAGEFFVEDVLEAGLPPQIERPIDLQE 189

Query: 698  DKYXXXXXXXXXXXXTFNPLQFQLLIDHITGHLGDENEQTIASKIVRVVVAGNSVHIAPR 877
            DKY            + NPLQFQLL+DHITGHLGDE EQ +A++IV VV+AGNS     +
Sbjct: 190  DKYVVLLSGLCIGSKSANPLQFQLLVDHITGHLGDEEEQGLAAQIVHVVIAGNSFEFPRK 249

Query: 878  FLNGQTV-----AAKDQPRIAEPIKELDIMLTQLVASLPVDIMPGCNDPANFSLPQQPLH 1042
             +NGQ +     A+KDQ  + EPIKELDIML+Q+ A + VDIMPG NDPANF+LPQQPL+
Sbjct: 250  LINGQVLITFNLASKDQSTLYEPIKELDIMLSQIAAGVSVDIMPGTNDPANFALPQQPLN 309

Query: 1043 RCLFSGASTYNTFSSCPNPHQFDLDNVKCIGTSGQNIDDLYRYSDAKDRLEFMERTLKWR 1222
            RCLF G+S YNTF SC NPH FD+DN++ +GTSGQNIDDL +YS+AK +L+F+ERTL+WR
Sbjct: 310  RCLFPGSSPYNTFRSCTNPHSFDVDNIRFLGTSGQNIDDLGKYSEAKSKLDFVERTLRWR 369

Query: 1223 HLAPTAPNSLGCYPYTDKDPFLVETCPHVYFAGNQDKYETRLLKGTEKQQVRLISIPRFC 1402
            HLAPTAPN+LGCYP+TD+DPFL+ETCPHVYF GNQDKY+ RL+KG+E Q VRLI IP+FC
Sbjct: 370  HLAPTAPNTLGCYPFTDRDPFLIETCPHVYFVGNQDKYDNRLIKGSEGQLVRLICIPKFC 429

Query: 1403 ESGIAVMLNLRNLECSTLSFSTSFD 1477
            E+GIAV +NLRNLEC TLSFST  +
Sbjct: 430  ETGIAVAVNLRNLECHTLSFSTQIN 454



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>O93610:DPOD2_XENLA DNA polymerase subunit delta 2 - Xenopus laevis (African clawed frog)|
          Length = 463

 Score =  327 bits (839), Expect = 7e-89
 Identities = 174/423 (41%), Positives = 254/423 (60%), Gaps = 6/423 (1%)
 Frame = +2

Query: 215  YSNLDERYTIQGERYQGQQYSHIYYTRLHHMRTLLHALVPSR-KPHLPVTTVLGLEKGKD 391
            YSN    + + GER   +QY+HIY TRL  MR LL      R    + V  +  L+ G+ 
Sbjct: 32   YSNCSSIFRL-GERTFTRQYAHIYATRLEQMRPLLIKSAKQRWGDDIAVRKLCELQGGEK 90

Query: 392  CVLVGTLYKHMKLKPSILDEYSKERSAIPLVKPHNFMHSDDNLILEDESGRVALAGAIPP 571
            C ++GTL+K M+L+PSIL E S+E + +P      ++   D LILEDE  R+ L GA   
Sbjct: 91   CCVIGTLFKSMELQPSILREISEEHNLLPQPARQKYISDSDELILEDELQRIKLEGATDV 150

Query: 572  AAYVTGVVVALHGKETSAGNFLVEDVMEAGLPPQSVLPCINEDKYXXXXXXXXXXXXTFN 751
               VTG V+A+ G E  AG F+VED     LP QS LP ++ED++            + +
Sbjct: 151  QQLVTGAVLAVLGAEEDAGKFVVEDFCLTSLPVQSPLPRLSEDRFVLLTSGLGLGGGSGD 210

Query: 752  PLQ-FQLLIDHITGHLGDENEQTIASKIVRVVVAGN----SVHIAPRFLNGQTVAAKDQP 916
             L   QLL+D +TG  G E +Q  A++I RV++AGN    +          + ++ K Q 
Sbjct: 211  SLMGLQLLLDLVTGQAGAEEDQGCAARISRVILAGNLLSENTQGKDSLNKAKYLSKKTQA 270

Query: 917  RIAEPIKELDIMLTQLVASLPVDIMPGCNDPANFSLPQQPLHRCLFSGASTYNTFSSCPN 1096
               E +K LD +L Q+  S+ VD+MPG  DP N+ LPQQPLHRC+F  ++ Y+T     N
Sbjct: 271  ASVEAVKMLDEILLQMSGSVSVDVMPGAFDPTNYILPQQPLHRCMFPQSALYSTLQLVTN 330

Query: 1097 PHQFDLDNVKCIGTSGQNIDDLYRYSDAKDRLEFMERTLKWRHLAPTAPNSLGCYPYTDK 1276
            P++ ++D V+ +GTSGQNI D+Y+YS  +D L+ +E TL+  HL PTAP++LGCYP+   
Sbjct: 331  PYEAEIDGVRFLGTSGQNIGDIYKYSSMQDYLDILEWTLQVGHLCPTAPDTLGCYPFYKS 390

Query: 1277 DPFLVETCPHVYFAGNQDKYETRLLKGTEKQQVRLISIPRFCESGIAVMLNLRNLECSTL 1456
            DPF+++ CPHVYF G+  K+  + + G E Q+V L+++P FC +  A ++NLR L+C  +
Sbjct: 391  DPFILQNCPHVYFCGSAPKFSCKEVTGAEGQRVLLLTVPEFCSTQTACLVNLRTLQCQPI 450

Query: 1457 SFS 1465
            SFS
Sbjct: 451  SFS 453



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>O35654:DPOD2_MOUSE DNA polymerase subunit delta 2 - Mus musculus (Mouse)|
          Length = 469

 Score =  325 bits (833), Expect = 4e-88
 Identities = 176/428 (41%), Positives = 254/428 (59%), Gaps = 9/428 (2%)
 Frame = +2

Query: 209  ADYSNLDERYTIQGERYQGQQYSHIYYTRLHHMRTLLHALVPSRKPH----LPVTTVLGL 376
            A Y+N  + + + GER   +QY+HIY TRL  MR  L   V   + H    + V  +  L
Sbjct: 30   ATYTNSSQPFRL-GERSFNRQYAHIYATRLIQMRPFL---VTRAQQHWGSRVEVKKLCEL 85

Query: 377  EKGKDCVLVGTLYKHMKLKPSILDEYSKERSAIPLVKPHNFMHSDDNLILEDESGRVALA 556
            + G+ C +VGTL+K M L+PSIL E S+E + +P      ++H DD L+LEDE  R+ L 
Sbjct: 86   QPGEQCCVVGTLFKAMSLQPSILREISEEHNLVPQPPRSKYIHPDDELVLEDELQRIKLK 145

Query: 557  GAIPPAAYVTGVVVALHGKETSAGNFLVEDVMEAGLPPQSVLPCINEDKYXXXXXXXXXX 736
            G I  +  VTG V+A+ G     G F VED   A L PQ  +P ++ D++          
Sbjct: 146  GTIDVSKLVTGTVLAVLGSAKDDGRFQVEDHCFADLAPQKPVPPLDTDRFVLLVSGLGLG 205

Query: 737  XXTFNPLQ-FQLLIDHITGHLGDENEQTIASKIVRVVVAGN----SVHIAPRFLNGQTVA 901
                  L   QLL+D +TG LGDE EQ  A+ + RV++AGN    +          + + 
Sbjct: 206  GGGGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHNTQSRDSINKAKYLT 265

Query: 902  AKDQPRIAEPIKELDIMLTQLVASLPVDIMPGCNDPANFSLPQQPLHRCLFSGASTYNTF 1081
             K Q    E +K LD +L QL AS+PVD+MPG  DP N++LPQQPLH C+F  A+ Y+T 
Sbjct: 266  KKTQAASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTL 325

Query: 1082 SSCPNPHQFDLDNVKCIGTSGQNIDDLYRYSDAKDRLEFMERTLKWRHLAPTAPNSLGCY 1261
                NP+Q  +D V+ +GTSGQN+ D++RYS  +D LE +E TL+ RH++PTAP++LGCY
Sbjct: 326  QLVTNPYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCY 385

Query: 1262 PYTDKDPFLVETCPHVYFAGNQDKYETRLLKGTEKQQVRLISIPRFCESGIAVMLNLRNL 1441
            P+   DPF+   CPHVYF GN   + +++++G E Q V L+++P F  +  A ++NLR+L
Sbjct: 386  PFYKTDPFIFPECPHVYFCGNTPSFGSKIIRGPEDQVVLLVAVPDFSSTQTACLVNLRSL 445

Query: 1442 ECSTLSFS 1465
             C  +SF+
Sbjct: 446  ACQPISFA 453



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>P49005:DPOD2_HUMAN DNA polymerase subunit delta 2 - Homo sapiens (Human)|
          Length = 469

 Score =  325 bits (832), Expect = 5e-88
 Identities = 176/425 (41%), Positives = 250/425 (58%), Gaps = 6/425 (1%)
 Frame = +2

Query: 209  ADYSNLDERYTIQGERYQGQQYSHIYYTRLHHMRTLLHALVPSR-KPHLPVTTVLGLEKG 385
            A Y+N  + + + GER   +QY+HIY TRL  MR  L           + V  +  L+  
Sbjct: 30   ATYTNSSQPFRL-GERSFSRQYAHIYATRLIQMRPFLENRAQQHWGSGVGVKKLCELQPE 88

Query: 386  KDCVLVGTLYKHMKLKPSILDEYSKERSAIPLVKPHNFMHSDDNLILEDESGRVALAGAI 565
            + C +VGTL+K M L+PSIL E S+E + +P      ++H DD L+LEDE  R+ L G I
Sbjct: 89   EKCCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDDELVLEDELQRIKLKGTI 148

Query: 566  PPAAYVTGVVVALHGKETSAGNFLVEDVMEAGLPPQSVLPCINEDKYXXXXXXXXXXXXT 745
              +  VTG V+A+ G     G FLVED   A L PQ   P ++ D++             
Sbjct: 149  DVSKLVTGTVLAVFGSVRDDGKFLVEDYCFADLAPQKPAPPLDTDRFVLLVSGLGLGGGG 208

Query: 746  FNPLQ-FQLLIDHITGHLGDENEQTIASKIVRVVVAGN----SVHIAPRFLNGQTVAAKD 910
               L   QLL+D +TG LGDE EQ  A+ + RV++AGN    S          + +  K 
Sbjct: 209  GESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHSTQSRDSINKAKYLTKKT 268

Query: 911  QPRIAEPIKELDIMLTQLVASLPVDIMPGCNDPANFSLPQQPLHRCLFSGASTYNTFSSC 1090
            Q    E +K LD +L QL AS+PVD+MPG  DP N++LPQQPLH C+F  A+ Y+T    
Sbjct: 269  QAASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQLV 328

Query: 1091 PNPHQFDLDNVKCIGTSGQNIDDLYRYSDAKDRLEFMERTLKWRHLAPTAPNSLGCYPYT 1270
             NP+Q  +D V+ +GTSGQN+ D++RYS  +D LE +E TL+ RH++PTAP++LGCYP+ 
Sbjct: 329  TNPYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYPFY 388

Query: 1271 DKDPFLVETCPHVYFAGNQDKYETRLLKGTEKQQVRLISIPRFCESGIAVMLNLRNLECS 1450
              DPF+   CPHVYF GN   + +++++G E Q V L+++P F  +  A ++NLR+L C 
Sbjct: 389  KTDPFIFPECPHVYFCGNTPSFGSKIIRGPEDQTVLLVTVPDFSATQTACLVNLRSLACQ 448

Query: 1451 TLSFS 1465
             +SFS
Sbjct: 449  PISFS 453



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>Q6AXY4:DPOD2_RAT DNA polymerase subunit delta 2 - Rattus norvegicus (Rat)|
          Length = 469

 Score =  324 bits (831), Expect = 6e-88
 Identities = 175/425 (41%), Positives = 251/425 (59%), Gaps = 6/425 (1%)
 Frame = +2

Query: 209  ADYSNLDERYTIQGERYQGQQYSHIYYTRLHHMRTLLHALVPSR-KPHLPVTTVLGLEKG 385
            A Y+N  + + + GER   +QY+HIY TRL  MR  L +         + V  +  L+ G
Sbjct: 30   ATYTNSSQPFRL-GERSFNRQYAHIYATRLIQMRPFLVSRAQQHWGSQVEVKKLCELQPG 88

Query: 386  KDCVLVGTLYKHMKLKPSILDEYSKERSAIPLVKPHNFMHSDDNLILEDESGRVALAGAI 565
            + C +VGTL+K M L+PSIL E S+E + IP      ++H DD L+LEDE  R+ L G I
Sbjct: 89   EQCCVVGTLFKAMPLQPSILREISEEHNLIPQPPRSKYIHPDDELVLEDELQRIKLKGTI 148

Query: 566  PPAAYVTGVVVALHGKETSAGNFLVEDVMEAGLPPQSVLPCINEDKYXXXXXXXXXXXXT 745
              +  VTG V+A+ G     G F VED   A L PQ+ +P ++ D++             
Sbjct: 149  DVSKLVTGTVLAVFGSVKDDGKFQVEDHCFADLAPQNPVPPLDTDRFVLLVSGLGLGGGG 208

Query: 746  FNPLQ-FQLLIDHITGHLGDENEQTIASKIVRVVVAGN----SVHIAPRFLNGQTVAAKD 910
               L   QLL+D +TG LGDE EQ  A+ + RV++AGN    +          + +  K 
Sbjct: 209  GESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHNTQSRDSINKAKYLTKKT 268

Query: 911  QPRIAEPIKELDIMLTQLVASLPVDIMPGCNDPANFSLPQQPLHRCLFSGASTYNTFSSC 1090
            Q    E +K LD +L QL AS+PVD+MPG  DP N++LPQQPLH C+F  A+ Y T    
Sbjct: 269  QAASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYATLQLV 328

Query: 1091 PNPHQFDLDNVKCIGTSGQNIDDLYRYSDAKDRLEFMERTLKWRHLAPTAPNSLGCYPYT 1270
             NP+Q  +D V+ +GTSGQN+ D++RYS  +D LE +E TL+ RH++PTAP++LGCYP+ 
Sbjct: 329  TNPYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYPFY 388

Query: 1271 DKDPFLVETCPHVYFAGNQDKYETRLLKGTEKQQVRLISIPRFCESGIAVMLNLRNLECS 1450
              DPF+   CPHVYF GN   + +++++G E Q V L+++P F  +  A ++NLR L C 
Sbjct: 389  KTDPFIFAECPHVYFCGNTPSFGSKVIRGPEDQAVLLVAVPDFSSTQTACLVNLRGLTCQ 448

Query: 1451 TLSFS 1465
             +SF+
Sbjct: 449  PISFA 453



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>P49004:DPOD2_BOVIN DNA polymerase subunit delta 2 - Bos taurus (Bovine)|
          Length = 469

 Score =  324 bits (830), Expect = 8e-88
 Identities = 177/423 (41%), Positives = 252/423 (59%), Gaps = 6/423 (1%)
 Frame = +2

Query: 215  YSNLDERYTIQGERYQGQQYSHIYYTRLHHMRTLLHALVPSR-KPHLPVTTVLGLEKGKD 391
            Y+N  + + + GER   +QY+HIY TRL  MR  L +    R    + V  +  L+ G+ 
Sbjct: 32   YTNSSQPFRL-GERSFSRQYAHIYATRLIQMRPFLVSRAQQRWGSGVLVKKLCELQPGEK 90

Query: 392  CVLVGTLYKHMKLKPSILDEYSKERSAIPLVKPHNFMHSDDNLILEDESGRVALAGAIPP 571
            C +VGTL+K M L+PSIL E S+E + +P      ++H DD LILEDE  R+ L G I  
Sbjct: 91   CCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDDELILEDELQRIKLEGTIDV 150

Query: 572  AAYVTGVVVALHGKETSAGNFLVEDVMEAGLPPQSVLPCINEDKYXXXXXXXXXXXXTFN 751
            +  VTG V+A+ G     G FLVED   AGL PQ     ++ D++               
Sbjct: 151  SKLVTGTVLAVLGSAGDDGKFLVEDHCFAGLAPQKPACPLDTDRFVLLVSGLGLGGGGGE 210

Query: 752  PLQ-FQLLIDHITGHLGDENEQTIASKIVRVVVAGN----SVHIAPRFLNGQTVAAKDQP 916
             L   QLL+D +TG LGDE EQ  A+ + RV++AGN    +          + +  K Q 
Sbjct: 211  SLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHNTQSRDSINKAKYLTKKTQA 270

Query: 917  RIAEPIKELDIMLTQLVASLPVDIMPGCNDPANFSLPQQPLHRCLFSGASTYNTFSSCPN 1096
               E +K LD +L QL AS+PVD+MPG  DP N++LPQQPLH C+F  A+ Y+T     N
Sbjct: 271  ASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQLVTN 330

Query: 1097 PHQFDLDNVKCIGTSGQNIDDLYRYSDAKDRLEFMERTLKWRHLAPTAPNSLGCYPYTDK 1276
            P+Q  +D V+ +GTSGQN+ D++RYS  +D LE +E TL+ RH++PTAP++LGCYP+   
Sbjct: 331  PYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLQVRHISPTAPDTLGCYPFYKT 390

Query: 1277 DPFLVETCPHVYFAGNQDKYETRLLKGTEKQQVRLISIPRFCESGIAVMLNLRNLECSTL 1456
            DPF+   CPHVYF GN   + +++++G E Q V L+++P F  +  A ++NLR+L C  +
Sbjct: 391  DPFIFPECPHVYFCGNTPSFGSKIIQGPEDQTVLLVAVPDFSTTQTACLVNLRSLACQPI 450

Query: 1457 SFS 1465
            SFS
Sbjct: 451  SFS 453



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>Q9W088:DPOD2_DROME DNA polymerase delta small subunit - Drosophila melanogaster (Fruit|
            fly)
          Length = 431

 Score =  265 bits (678), Expect = 3e-70
 Identities = 155/428 (36%), Positives = 221/428 (51%), Gaps = 6/428 (1%)
 Frame = +2

Query: 200  RKQADYSNLDERYTIQGERYQGQQYSHIYYTRLHHMRTLLHALVPSR---KPHLPVTTVL 370
            R +  Y NL   + ++G  YQ +Q+ H+Y  RL  M  LL  L   +   K  +     L
Sbjct: 4    RLETKYENLSSIFRLKGHDYQ-KQFFHLYAHRLAEMTRLLTPLAQKKWGNKEPIKKLCEL 62

Query: 371  GLEKGKDCVLVGTLYKHMKLKPSILDEYSKERSAIPLVKPHNFMHSDDNLILEDESGRVA 550
              E+   C+L+GT++KH   KPSIL + S+E    P     N+   +D ++LEDE  RV 
Sbjct: 63   RGEQDVHCILIGTIFKHQAHKPSILRDISEENQLAPQPPRQNYSDPEDKIVLEDELQRVR 122

Query: 551  LAGAIPPAAYVTGVVVALHGKETSAGNFLVEDVMEAGLPPQSVLPCINEDKYXXXXXXXX 730
            L G +      TGVV A  G   S G F VED++     PQ  L  I   +         
Sbjct: 123  LQGKLNGQLLATGVVCAALGGTDSDGFFNVEDILFYESGPQKPLAPIKRSRLLVLASGLD 182

Query: 731  XXXXTFNPLQFQLLIDHITGHLGDENEQTIASKIVRVVVAGNSVHIAPRFLNGQTVAAKD 910
                        L    + G LG+  E   A  +VR++VAGNSV  +          A+ 
Sbjct: 183  QLQAHKFVEALNLFQYWLAGSLGNNKE---AGSMVRLIVAGNSVRASAMAHVPTLQVART 239

Query: 911  QPRI---AEPIKELDIMLTQLVASLPVDIMPGCNDPANFSLPQQPLHRCLFSGASTYNTF 1081
            Q       + + +LD        SLPVDIMPG  DPANF LPQQP H+C+F  A+   TF
Sbjct: 240  QANANDTVQAVSQLDQWFASWARSLPVDIMPGPYDPANFMLPQQPFHKCMFPQAAQLATF 299

Query: 1082 SSCPNPHQFDLDNVKCIGTSGQNIDDLYRYSDAKDRLEFMERTLKWRHLAPTAPNSLGCY 1261
             +  NP+   LD    +GTSGQN+ DL R +     LE +  TL W H+APTAP++L CY
Sbjct: 300  QAVTNPYSCRLDEALVVGTSGQNVSDLLRSTSLDSALEALRCTLTWGHVAPTAPDTLACY 359

Query: 1262 PYTDKDPFLVETCPHVYFAGNQDKYETRLLKGTEKQQVRLISIPRFCESGIAVMLNLRNL 1441
            PY + DPF++  CPHVY+AGN + + T L +G+E ++ RL+ +P F ++    +++L  L
Sbjct: 360  PYIESDPFILRECPHVYYAGNCESFATELHEGSEGKRTRLVCVPSFSKTQSVAVVDLDTL 419

Query: 1442 ECSTLSFS 1465
            +C  ++FS
Sbjct: 420  DCRMVNFS 427



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>P46957:DPOD2_YEAST DNA polymerase delta small subunit - Saccharomyces cerevisiae|
            (Baker's yeast)
          Length = 487

 Score =  214 bits (546), Expect = 7e-55
 Identities = 146/449 (32%), Positives = 222/449 (49%), Gaps = 47/449 (10%)
 Frame = +2

Query: 251  ERYQGQQYSHIYYTRLHHMRTLLHALVPSR---------KPHLPVTTVLGLEKGKDCVLV 403
            +R  G QY HIY  RL   R  +      R         +  L    VL ++  + C  V
Sbjct: 46   KRDYGSQYYHIYQYRLKTFRERVLKECDKRWDAGFTLNGQLVLKKDKVLDIQGNQPCWCV 105

Query: 404  GTLYKHMKLKPSILDEYSKERSAIP-LVKPHNFMHS-DDNLILEDESGRVALAGA-IPPA 574
            G++Y  MK KP++LDE   +    P L K +       D ++LEDESGRV L G  I   
Sbjct: 106  GSIYCEMKYKPNVLDEVINDTYGAPDLTKSYTDKEGGSDEIMLEDESGRVLLVGDFIRST 165

Query: 575  AYVTGVVVALHGKETSAGNFLVEDVMEAGLPPQSVLP-----CINEDKYXXXXXXXXXXX 739
             ++TGVVV + G E  AG F V D+      PQ+  P     C    K            
Sbjct: 166  PFITGVVVGILGMEAEAGTFQVLDICYPTPLPQNPFPAPIATCPTRGKIALVSGLNLNNT 225

Query: 740  XTFNPLQFQLLIDHITGHLGDENEQTIASKIVRVVVAGNSVHIAPRFLNGQTVAAKDQPR 919
                 L+ ++L + + G + ++ +    S I R+++ GNSV    + +N      KD+  
Sbjct: 226  SPDRLLRLEILREFLMGRINNKIDDI--SLIGRLLICGNSVDFDIKSVN------KDELM 277

Query: 920  IAEPIKELDIMLTQLVASLPVDIMPGCNDPANFSLPQQPLHRCLFS-------GASTYNT 1078
            I+  + E    L  ++ S+ VDIMPG NDP++ SLPQQP H+ LF          S    
Sbjct: 278  IS--LTEFSKFLHNILPSISVDIMPGTNDPSDKSLPQQPFHKSLFDKSLESYFNGSNKEI 335

Query: 1079 FSSCPNPHQFDLDNVKCIGTSGQNIDDLYRY-----------------------SDAKDR 1189
             +   NP++F  + V  +  SG+NI+D+ +Y                        D + R
Sbjct: 336  LNLVTNPYEFSYNGVDVLAVSGKNINDICKYVIPSNDNGESENKVEEGESNDFKDDIEHR 395

Query: 1190 LEFMERTLKWRHLAPTAPNSLGCYPYTDKDPFLVETCPHVYFAGNQDKYETRLLKGTEKQ 1369
            L+ ME T+KW+++APTAP++L CYPYTDKDPF+++  PHVY   NQ  + TR+++   K 
Sbjct: 396  LDLMECTMKWQNIAPTAPDTLWCYPYTDKDPFVLDKWPHVYIVANQPYFGTRVVEIGGK- 454

Query: 1370 QVRLISIPRFCESGIAVMLNLRNLECSTL 1456
             +++IS+P F  +G+ ++L+L  LE  T+
Sbjct: 455  NIKIISVPEFSSTGMIILLDLETLEAETV 483



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>P87324:DPOD2_SCHPO DNA polymerase subunit delta 2 - Schizosaccharomyces pombe (Fission|
            yeast)
          Length = 462

 Score =  201 bits (510), Expect = 1e-50
 Identities = 131/425 (30%), Positives = 213/425 (50%), Gaps = 26/425 (6%)
 Frame = +2

Query: 266  QQYSHIYYTRLHHMRTLLHALVPSRKPHLP-VTTVLGLEKGKDCVLVGTLYKHMKLKPSI 442
            QQY+ IY+ RL  +R  +      + P    +  VL ++  +DC +V T Y    LKP++
Sbjct: 27   QQYASIYFARLTALRPRITEAASKKWPDKQRLERVLDVKSDEDCWVVATAYMTTALKPNV 86

Query: 443  LDEYSKERSAI------PLVKPHNFMHSDDNLILEDESGRVALAGA-IPPAAYVTGVVVA 601
            +++ ++  + +      P V P +    D    LED+ GR+  +G+ +  A  VTGVV+A
Sbjct: 87   MNDVTQLHTIVTTTEESPYVSPEDAASGDIEYALEDDYGRIDCSGSFLYDAGVVTGVVLA 146

Query: 602  LHGKETSAGNFLVEDVMEAGLPPQSVLPCINEDK----YXXXXXXXXXXXXTFNPLQFQL 769
            + G E   G F+V DV   G+   S+    +E +    Y                +Q   
Sbjct: 147  VLGHEDEQGRFVVVDVCFPGIFSHSIPMTTDESQAQPEYIAAVSGLGLSNDGIEGIQVHQ 206

Query: 770  LIDHITGHLGDENEQTIASKIVRVVVAGN----SVHIAPRFLNGQTVAAKDQPRIA---- 925
            L+D + G L   +  +  S I R+++ GN    S+ IA        +  K   R      
Sbjct: 207  LVDFLRGTLPHVSSFS-PSSIKRLIILGNCLAPSIEIADSASASVPIGKKKVKRYGYDTS 265

Query: 926  ----EPIKELDIMLTQLVASLPVDIMPGCNDPANFSLPQQPLHRCLFSGASTY--NTFSS 1087
                 P  +LD  L Q+ +S+ V +MPG  D ++  LPQQPLH  L + +  +  ++  +
Sbjct: 266  AYNPNPTFQLDNFLDQVCSSIDVTLMPGPYDYSSTILPQQPLHPALLTKSKVWLGSSLQT 325

Query: 1088 CPNPHQFDLDNVKCIGTSGQNIDDLYRYSDAKDRLEFMERTLKWRHLAPTAPNSLGCYPY 1267
              NP    L N   + TSGQNI+DL +Y   K  L+ ME TL W H+ PT+P++L CYP+
Sbjct: 326  VTNPTWLSLGNHFVLATSGQNINDLRKYHPKKSSLQCMENTLLWNHITPTSPDTLWCYPF 385

Query: 1268 TDKDPFLVETCPHVYFAGNQDKYETRLLKGTEKQQVRLISIPRFCESGIAVMLNLRNLEC 1447
            TDKD F++E  P +Y  GNQ K+  + +   E  +++L+S+P F ++G+ V++N+  L  
Sbjct: 386  TDKDTFVMEEMPDLYLCGNQPKFGCKTVI-NEGNRIQLVSVPEFRKTGVLVLINMHTLNV 444

Query: 1448 STLSF 1462
              + F
Sbjct: 445  EIIQF 449



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>Q19366:DPOD2_CAEEL Probable DNA polymerase delta small subunit - Caenorhabditis elegans|
          Length = 451

 Score =  119 bits (298), Expect = 4e-26
 Identities = 110/450 (24%), Positives = 197/450 (43%), Gaps = 29/450 (6%)
 Frame = +2

Query: 212  DYSNLDERYTIQGERYQG---QQYSHIYYTRLHHM--RTLLHALVPSRKPHLPVTTVLGL 376
            +Y N+ +RY +  +  +G   +QY  +Y  RL  +  R L +A     K     + +   
Sbjct: 10   NYKNVSDRYILTEKDKKGAFTRQYFEVYEARLKELKPRILENAEREIGKGKFTHSQLSDA 69

Query: 377  EKGKDCVLVGTLYKHMKLKPSIL-----------DEYSKERSAIPLVKPHNFMHSDDNLI 523
            ++ ++  +VG + K +  +PSIL           D+Y ++     + +    +  +D + 
Sbjct: 70   KQDEEIFVVGVIVKRIAARPSILKSLLNEDKVAYDDYEEDAEEDEVKRYAGSI--EDRIE 127

Query: 524  LEDESGRVALAGAIPPAAYVTGVVVALHGKETSAGNFLVEDVMEAGLP-PQSVLP--CIN 694
            LE +   V L G I      TG  V + GK    G F V  ++   +  P+ V     I 
Sbjct: 128  LESDKQTVRLEGNISMDECATGCCVGVLGKLGKEGVFHVNRLVWPSVKVPKKVAVDGTIA 187

Query: 695  EDKYXXXXXXXXXXXXTFNPLQFQLLIDHITGHLGDENEQTIASKIVRVVVAGNSVHIAP 874
                            T + L+F  + D +   +G+EN+      I R+VV G  V    
Sbjct: 188  FVSGLDLTGDLEDDRLTISGLEF--MADWMNVQVGNENQ---CPPIDRLVVIGPLVETKS 242

Query: 875  RFLNGQTVAAKDQPRIAEPIKELDIMLT-----QLVASLP----VDIMPGCNDPANFSLP 1027
               + Q+V        AE       ++T       +A  P    VD+ PG  DP +   P
Sbjct: 243  NGCDVQSVVRTLTLSRAEKHSSTASLITVDKIINSIAEKPLVNTVDVTPGVGDPCSSMWP 302

Query: 1028 QQPLHR-CLFSGASTYNTFSSCPNPHQFDLDNVKCIGTSGQNIDDLYRYSDAKDRLEFME 1204
              P+HR CL     +    +   NP++F+++ ++ +  SG+N+ +L R S      + +E
Sbjct: 303  LPPIHRVCLPRCGMSDKKVNLVTNPYEFEVNGLRVMTMSGENVSELLRTSLKWTGADAIE 362

Query: 1205 RTLKWRHLAPTAPNSLGCYPYTDKDPFLVETCPHVYFAGNQDKYETRLLKGTEKQQVRLI 1384
              +KW+H+AP  P++L  +P  ++DP +++  PHV   GNQ   E R +   +     ++
Sbjct: 363  NIIKWQHVAPNCPDTLDAFPVAERDPLIMDITPHVIICGNQPHAEFRHIP-IDGSNCLVV 421

Query: 1385 SIPRFCESGIAVMLNLRNLECSTLSFSTSF 1474
             +P+F ++ +A  LNL +L     +F   F
Sbjct: 422  CLPKFSKTRVACFLNLSDLSLKWQNFDHQF 451



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>O57863:DP2S_PYRHO DNA polymerase II small subunit - Pyrococcus horikoshii|
          Length = 622

 Score = 50.1 bits (118), Expect = 3e-05
 Identities = 76/380 (20%), Positives = 147/380 (38%), Gaps = 14/380 (3%)
 Frame = +2

Query: 266  QQYSHIYYTRLHHMRTLLHALVPSRKPHLPVTTVLGLEKGK------DCVLVGTLYKHMK 427
            + Y+ ++ +RL  +R +L       + +  V+ V+ ++K K      +  ++G +    +
Sbjct: 229  EAYASLFRSRLRKLRRIL-------RENPEVSNVIDIKKLKYVKGDEEVTIIGLVNSKKE 281

Query: 428  LKPSILDEYSKERSAIPLVKPHNFMHSDDNLILEDESGRVALAGAIPPAAYVTGVVVALH 607
                ++ E   +   + +  P            + E  R AL   +P A      VVA  
Sbjct: 282  TSKGLIFEVEDQTDRVKVFLPK-----------DSEDYREALK-VLPDA------VVAFK 323

Query: 608  GKETSAGNFLVEDVMEAGLPP-QSVLPCINEDKYXXXXXXXXXXXXTFNPLQFQLLIDHI 784
            G  +  G F         +P  +   P + E  Y             F    F   ++ +
Sbjct: 324  GVYSKRGIFFANRFYLPDVPLYRKQKPPLEEKVYAVLTSDIHVGSKEFCEKAFIKFLEWL 383

Query: 785  TGHLGDENEQTIASKIVRVVVAGNSVH---IAPRFLNGQTVAAKDQPRIAEPIKELDIML 955
             G++  + E+ I S+I  +++AG+ V    I P   +   +     P I +  + L  +L
Sbjct: 384  NGYVESKEEEEIVSRIRYLIIAGDVVDGIGIYPGQYSDLII-----PDIFDQYEALANLL 438

Query: 956  TQLVASLPVDIMPGCNDPANFSLPQQPLHRCLFSGASTYNTFSSCPNPHQFDLDNVKCIG 1135
            + +   + + I PG +D A  ++PQ   +                 NP    L     + 
Sbjct: 439  SNVPKHITIFIGPGNHDAARPAIPQPEFYEEYAKPLYKLKNTVIISNPAVIRLHGRDFLI 498

Query: 1136 TSGQNIDDLYRY----SDAKDRLEFMERTLKWRHLAPTAPNSLGCYPYTDKDPFLVETCP 1303
              G+ I+D+  +    +  K  L  +E  LK RHLAPT    +   P   +D  ++E  P
Sbjct: 499  AHGRGIEDVVSFVPGLTHHKPGLPMVE-LLKMRHLAPTFGGKVPIAP-DPEDLLVIEEVP 556

Query: 1304 HVYFAGNQDKYETRLLKGTE 1363
             +   G+   Y+T + +G +
Sbjct: 557  DLVQMGHVHVYDTAVYRGVQ 576



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>Q9V2F3:DP2S_PYRAB DNA polymerase II small subunit - Pyrococcus abyssi|
          Length = 619

 Score = 47.8 bits (112), Expect = 1e-04
 Identities = 56/265 (21%), Positives = 103/265 (38%), Gaps = 8/265 (3%)
 Frame = +2

Query: 593  VVALHGKETSAGNFLVEDVMEAGLPP-QSVLPCINEDKYXXXXXXXXXXXXTFNPLQFQL 769
            VVA  G  +  G F         +P  +   P + E  Y             F    F  
Sbjct: 316  VVAFKGFYSKKGIFFANKFYLPDVPLYRKQKPPLEEKVYAILISDIHVGSREFCEKAFLK 375

Query: 770  LIDHITGHLGDENEQTIASKIVRVVVAG---NSVHIAPRFLNGQTVAAKDQPRIAEPIKE 940
             ++ + GH+  + E+ I S++  +++AG   + + I P   +   +     P I +  + 
Sbjct: 376  FLEWLNGHVESKEEEEIVSRVKYLIIAGDVVDGIGIYPGQYSDLVI-----PDIFDQYEA 430

Query: 941  LDIMLTQLVASLPVDIMPGCNDPANFSLPQQPLHRCLFSGASTYNTFSSCPNPHQFDLDN 1120
            L  +L  +   + + I PG +D A  ++PQ   ++                NP    L  
Sbjct: 431  LANLLANVPEHITMFIGPGNHDAARPAIPQPEFYKEYAKPIYKLKNAIIISNPAVIRLHG 490

Query: 1121 VKCIGTSGQNIDDLYRY----SDAKDRLEFMERTLKWRHLAPTAPNSLGCYPYTDKDPFL 1288
               +   G+ I+D+  +    +  K  L  +E  LK RHLAPT    +   P   +D  +
Sbjct: 491  RDFLIAHGRGIEDVVSFVPGLTHHKPGLPMVE-LLKMRHLAPTFGGKVPIAP-DPEDLLV 548

Query: 1289 VETCPHVYFAGNQDKYETRLLKGTE 1363
            +E  P +   G+   Y+  + +G +
Sbjct: 549  IEEVPDLVQMGHVHVYDAVVYRGVQ 573



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>O27456:DP2S_METTH DNA polymerase II small subunit - Methanobacterium|
            thermoautotrophicum
          Length = 482

 Score = 47.8 bits (112), Expect = 1e-04
 Identities = 76/344 (22%), Positives = 139/344 (40%), Gaps = 13/344 (3%)
 Frame = +2

Query: 332  PSRKPHLPVTTVLGLEKGKDCV-LVGTL--YKHMKLKPSILDEYSKERSAIPLVKPHNFM 502
            P  K H+P+  + G   G+D V ++G +   ++ K    I+ E   +   I +V     +
Sbjct: 121  PELKGHIPIADLRG---GEDVVSIIGMVNDVRNTKNNHRII-ELEDDTGEISVV-----V 171

Query: 503  HSDDNLILEDESGRVALAGAIPPAAYVTGVVVALHGKETSAGNFLV-EDVMEAGLPPQSV 679
            H++++ + E                 V   VV +HG  T  G F+V  ++   G+P    
Sbjct: 172  HNENHKLFEKSE------------KIVRDEVVGVHG--TKKGRFVVASEIFHPGVPR--- 214

Query: 680  LPCINE---DKYXXXXXXXXXXXXTFNPLQFQLLIDHITGHLGDENEQTIASKIVRVVVA 850
               I E   D              TF    F   +  I G  G E ++++A+ +  +VVA
Sbjct: 215  ---IQEKEMDFSVAFISDVHIGSQTFLEDAFMKFVKWINGDFGSEEQRSLAADVKYLVVA 271

Query: 851  GNSVH---IAPRFLNGQTVAAKDQPRIAEPIKELDIMLTQLVASLPVDIMPGCNDPANFS 1021
            G+ V    I P     + +  +D   I E  +E   +   + + + + ++PG +D +  +
Sbjct: 272  GDIVDGIGIYPG--QEKELLIRD---IHEQYEEAARLFGDIRSDIKIVMIPGNHDSSRIA 326

Query: 1022 LPQQPLHRCLFSGASTYNTFSSCPNPHQFDLDNVKCIGTSGQNIDDLYRYSD--AKDRLE 1195
             PQ  +         +        NP    LD V+ +   G++ DD+    +  + +R +
Sbjct: 327  EPQPAIPEEYAKSLYSIRNIEFLSNPSLVSLDGVRTLIYHGRSFDDMAMSVNGLSHERSD 386

Query: 1196 -FMERTLKWRHLAPTAPNSLGCYPYTDKDPFLVETCPHVYFAGN 1324
              ME  L+ RHLAP            + D  +++  PHV   G+
Sbjct: 387  LIMEELLEKRHLAPIYGERTPLASEIE-DHLVIDEVPHVLHTGH 429



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>P81412:DP2S_PYRFU DNA polymerase II small subunit - Pyrococcus furiosus|
          Length = 613

 Score = 41.6 bits (96), Expect = 0.011
 Identities = 44/208 (21%), Positives = 87/208 (41%), Gaps = 7/208 (3%)
 Frame = +2

Query: 761  FQLLIDHITGHLGDENEQTIASKIVRVVVAGN---SVHIAPRFLNGQTVAAKDQPRIAEP 931
            F   ++ + G++  + E+ I S++  +++AG+    V + P      T+     P I + 
Sbjct: 367  FIKFLEWLNGNVETKEEEEIVSRVKYLIIAGDVVDGVGVYPGQYADLTI-----PDIFDQ 421

Query: 932  IKELDIMLTQLVASLPVDIMPGCNDPANFSLPQQPLHRCLFSGASTYNTFSSCPNPHQFD 1111
             + L  +L+ +   + + I PG +D A  ++PQ   ++                NP    
Sbjct: 422  YEALANLLSHVPKHITMFIAPGNHDAARQAIPQPEFYKEYAKPIYKLKNAVIISNPAVIR 481

Query: 1112 LDNVKCIGTSGQNIDDLY----RYSDAKDRLEFMERTLKWRHLAPTAPNSLGCYPYTDKD 1279
            L     +   G+ I+D+       +  K  L  +E  LK RH+AP     +   P   +D
Sbjct: 482  LHGRDFLIAHGRGIEDVVGSVPGLTHHKPGLPMVE-LLKMRHVAPMFGGKVPIAP-DPED 539

Query: 1280 PFLVETCPHVYFAGNQDKYETRLLKGTE 1363
              ++E  P V   G+   Y+  + +G +
Sbjct: 540  LLVIEEVPDVVHMGHVHVYDAVVYRGVQ 567



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>P19486:EF1A_THEAC Elongation factor 1-alpha - Thermoplasma acidophilum|
          Length = 424

 Score = 36.6 bits (83), Expect = 0.34
 Identities = 16/43 (37%), Positives = 28/43 (65%)
 Frame = +2

Query: 335 SRKPHLPVTTVLGLEKGKDCVLVGTLYKHMKLKPSILDEYSKE 463
           S+KPHL + T+  ++ GK  ++   LY+H ++   I++EY KE
Sbjct: 3   SQKPHLNLITIGHVDHGKSTLVGRLLYEHGEIPAHIIEEYRKE 45



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>Q99466:NOTC4_HUMAN Neurogenic locus notch homolog protein 4 precursor - Homo sapiens|
            (Human)
          Length = 2003

 Score = 35.0 bits (79), Expect = 0.99
 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
 Frame = +1

Query: 553  CRSHTSSSLCDWGCSSP--SWEGNKCWQLSC*RCYGGWPSSSICVALHK*GQVCCFCIGI 726
            C   +    CD GCS P  +W+G  C  L     + G PS S C  L + GQ    C   
Sbjct: 1178 CEGRSGDGACDAGCSGPGGNWDGGDC-SLGVPDPWKGCPSHSRCWLLFRDGQCHPQCDSE 1236

Query: 727  KC 732
            +C
Sbjct: 1237 EC 1238



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>Q979T1:EF1A_THEVO Elongation factor 1-alpha - Thermoplasma volcanium|
          Length = 424

 Score = 35.0 bits (79), Expect = 0.99
 Identities = 15/43 (34%), Positives = 28/43 (65%)
 Frame = +2

Query: 335 SRKPHLPVTTVLGLEKGKDCVLVGTLYKHMKLKPSILDEYSKE 463
           S+KPHL + T+  ++ GK  ++   L++H ++   I++EY KE
Sbjct: 3   SQKPHLNLITIGHVDHGKSTLVGRLLFEHGEIPAHIIEEYRKE 45



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>Q6L202:EF1A_PICTO Elongation factor 1-alpha - Picrophilus torridus|
          Length = 424

 Score = 33.9 bits (76), Expect = 2.2
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = +2

Query: 335 SRKPHLPVTTVLGLEKGKDCVLVGTLYKHMKLKPSILDEYSKE 463
           S KPH+ +  +  ++ GK  ++   L++H ++   I+DEY KE
Sbjct: 3   SEKPHMNLVIIGHVDHGKSTLVGRLLFEHGEIPQHIIDEYKKE 45



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>Q5JRA6:MIA3_HUMAN Melanoma inhibitory activity protein 3 precursor - Homo sapiens|
            (Human)
          Length = 1907

 Score = 32.0 bits (71), Expect = 8.4
 Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
 Frame = +2

Query: 884  NGQTVAAKDQPRIAEPIKELDIML--------TQLVASLPVDIMPGCNDPANFSLPQQPL 1039
            N Q   A ++P    P++   +++          LVA+LP D+ PG   P  + LP +P+
Sbjct: 1126 NKQPETAAEEPASVTPLENAILLIYSFMFYLTKSLVATLPDDVQPG---PDFYGLPWKPV 1182

Query: 1040 HRCLFSGASTYNTF 1081
                F G +++  F
Sbjct: 1183 FITAFLGIASFAIF 1196



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>Q6L8H1:KRA54_HUMAN Keratin-associated protein 5-4 - Homo sapiens (Human)|
          Length = 288

 Score = 32.0 bits (71), Expect = 8.4
 Identities = 21/59 (35%), Positives = 25/59 (42%)
 Frame = +1

Query: 541 KSCTCRSHTSSSLCDWGCSSPSWEGNKCWQLSC*RCYGGWPSSSICVALHK*GQVCCFC 717
           +S  C+ +   S C   C S S  G+ C Q SC  C      SS CV       VCC C
Sbjct: 236 QSSCCKPYCCQSSCCKPCCSSSGCGSSCCQSSC--CNPCCSQSSCCV------PVCCQC 286


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 300,046,421
Number of extensions: 6665324
Number of successful extensions: 17174
Number of sequences better than 10.0: 21
Number of HSP's gapped: 17125
Number of HSP's successfully gapped: 21
Length of query: 581
Length of database: 100,686,439
Length adjustment: 119
Effective length of query: 462
Effective length of database: 68,045,334
Effective search space: 31436944308
Effective search space used: 31436944308
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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