ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf91b07 |
|---|---|
| Clone Library Name | barley_pub |
>LOC_Os10g21670:12010.t01651:unspliced-genomic dehydration stress-induced protein, putative, expressed| Length = 860 Score = 79.4 bits (167), Expect(2) = 3e-28 Identities = 27/50 (54%), Positives = 37/50 (74%) Frame = +1 / +3 Query: 247 GHNNFERGHTDTFEGRGKCLPSKPCRMLLESNGKGNKPGWFVDKVEFSQI 396 GH+ FE+G+ D F G G C+PS+PC M+L S+G GNKPGW+V V +Q+ Sbjct: 282 GHDYFEKGNLDRFRGAGACMPSEPCNMVLTSDGSGNKPGWYVSYVMVTQL 431 Score = 65.7 bits (137), Expect(2) = 3e-28 Identities = 32/79 (40%), Positives = 42/79 (53%) Frame = +1 / +3 Query: 7 TTLGTTTSAILHALARMKILLVLFLLALTQSTAYAQCEFVILVTTGNKEDAGTDARISLS 186 TTL T + + + L +TA AQC F ILV T + +AGTDAR+SL Sbjct: 36 TTLHTHPTKMKLTMKLSIALACFLFFLAAATTASAQCTFEILVKTDGRRNAGTDARVSLQ 215 Query: 187 VSTANGKKLVIESLKPWGQ 243 V A+G L I +L+ WGQ Sbjct: 216 VRAASGPTLTITNLESWGQ 272 Score = 50.6 bits (104), Expect(2) = 2e-13 Identities = 22/42 (52%), Positives = 25/42 (59%) Frame = -2 / -2 Query: 371 TNQPGLLPLPLDSSNILQGLDGKHLPRPSNVSVWPLSKLLWP 246 T PGLLP P + S +LQG DG P P N S +P SK WP Sbjct: 406 TYHPGLLPDPSEVSTMLQGSDGMQAPAPLNRSRFPFSK*SWP 281 Score = 44.6 bits (91), Expect(2) = 2e-13 Identities = 21/44 (47%), Positives = 24/44 (54%) Frame = -2 / -2 Query: 242 WPQGFRLSITSFFPFAVLTDKDIRASVPASSLFPVVTNITNSHC 111 WP RL I S P A T + RASVPA V+T I+N HC Sbjct: 271 WPHDSRLVIVSVGPLAARTCSETRASVPAFLRPSVLTRISNVHC 140 Score = 31.8 bits (63), Expect = 5.5 Identities = 15/50 (30%), Positives = 25/50 (50%) Frame = +3 / +2 Query: 99 HCLCAMRICYIGHNRK*RRCGHRRPYIFVGEHRKWKEAGYREPETLGPEG 248 H L A+ + +R+ HRRP + G R+ +A +P +GP+G Sbjct: 128 HRLRAVHVRDPRQDRRPEERRHRRPRLAAGARRQRADADDHQPGVVGPDG 277 Score = 31.8 bits (63), Expect = 5.5 Identities = 20/54 (37%), Positives = 25/54 (46%) Frame = -1 / -1 Query: 237 PRFQALDNQLLSICGAHRQRYTGVGARIFFISCCDQYNKFALRIGSALSESKEK 76 PR Q D Q GAH QR GVGA + D+ + ALR G +E+ Sbjct: 266 PRLQVGDRQRRPAGGAHLQRDAGVGAGVPPAVGLDEDLERALRGGGGRRREEEE 105
>LOC_Os10g21790:12010.t01662:unspliced-genomic dehydration stress-induced protein, putative, expressed| Length = 647 Score = 79.4 bits (167), Expect(2) = 1e-26 Identities = 27/50 (54%), Positives = 37/50 (74%) Frame = +1 / +1 Query: 247 GHNNFERGHTDTFEGRGKCLPSKPCRMLLESNGKGNKPGWFVDKVEFSQI 396 GH+ FE+G+ D F G G C+PS+PC M+L S+G GNKPGW+V V +Q+ Sbjct: 217 GHDYFEKGNLDRFRGAGDCMPSEPCNMVLTSDGSGNKPGWYVSYVMVTQL 366 Score = 60.2 bits (125), Expect(2) = 1e-26 Identities = 24/58 (41%), Positives = 35/58 (60%) Frame = +1 / +1 Query: 70 VLFLLALTQSTAYAQCEFVILVTTGNKEDAGTDARISLSVSTANGKKLVIESLKPWGQ 243 ++ LA + A +C F I+V T + +AGTDAR+SL V A G L + +L+ WGQ Sbjct: 34 LILFLAAAATAATTRCTFEIVVKTDGRRNAGTDARVSLQVRAARGPTLTVANLESWGQ 207 Score = 48.7 bits (100), Expect(2) = 2e-11 Identities = 21/42 (50%), Positives = 24/42 (57%) Frame = -2 / -1 Query: 371 TNQPGLLPLPLDSSNILQGLDGKHLPRPSNVSVWPLSKLLWP 246 T PGL P P + S +LQG DG P P N S +P SK WP Sbjct: 341 TYHPGLFPEPSEVSTMLQGSDGMQSPAPLNRSRFPFSK*SWP 216 Score = 39.6 bits (80), Expect(2) = 2e-11 Identities = 19/43 (44%), Positives = 23/43 (53%) Frame = -2 / -1 Query: 242 WPQGFRLSITSFFPFAVLTDKDIRASVPASSLFPVVTNITNSH 114 WP RL+ S P A T + RASVPA V+T I+N H Sbjct: 206 WPHDSRLATVSVGPLAARTCSETRASVPAFLRPSVLTTISNVH 78 Score = 33.6 bits (67), Expect = 1.5 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = +3 / +3 Query: 162 HRRPYIFVGEHRKWKEAGYREPETLGPEG 248 HRRP + G R+ +A R+P +GP+G Sbjct: 126 HRRPRLAAGARRQGPDADGRQPGVVGPDG 212 Score = 29.9 bits (59), Expect(2) = 3.3 Identities = 14/28 (50%), Positives = 16/28 (57%) Frame = -1 / -3 Query: 237 PRFQALDNQLLSICGAHRQRYTGVGARI 154 PR Q D Q + GAH QR GVGA + Sbjct: 201 PRLQVGDRQRRAPGGAHLQRDAGVGAGV 118 Score = 21.7 bits (41), Expect(2) = 3.3 Identities = 11/36 (30%), Positives = 14/36 (38%) Frame = -1 / -3 Query: 396 DLAELHFVHKPTGFVTFTIRLEQHPARFGR*TLTAA 289 +L H H P G V + E H A R + A Sbjct: 366 ELRHHHVAHVPPGLVPRAVGGEHHVAGLRRHAVAGA 259
>LOC_Os10g21700:12010.t01654:unspliced-genomic transposon protein, putative, CACTA, En/Spm sub-class| Length = 4260 Score = 73.9 bits (155), Expect(2) = 2e-26 Identities = 25/49 (51%), Positives = 35/49 (71%) Frame = +1 / +1 Query: 250 HNNFERGHTDTFEGRGKCLPSKPCRMLLESNGKGNKPGWFVDKVEFSQI 396 H+ FE+G+ D F G G C+PS+PC M+L S+G GN PGW+V V +Q+ Sbjct: 220 HDYFEKGNLDRFRGTGDCMPSEPCNMVLTSDGSGNMPGWYVSYVMVTQL 366 Score = 65.2 bits (136), Expect(2) = 2e-26 Identities = 27/64 (42%), Positives = 38/64 (59%) Frame = +1 / +1 Query: 52 RMKILLVLFLLALTQSTAYAQCEFVILVTTGNKEDAGTDARISLSVSTANGKKLVIESLK 231 ++ + F +TA+AQC F ILV T + AGT+AR+SL V A+G L I +L+ Sbjct: 16 KLSVAFAFFFFLAATTTAFAQCTFEILVKTDGRWYAGTNARVSLQVRAASGPTLTITNLE 195 Query: 232 PWGQ 243 WGQ Sbjct: 196 SWGQ 207 Score = 45.5 bits (93), Expect(2) = 2e-11 Identities = 20/41 (48%), Positives = 24/41 (58%) Frame = -2 / -2 Query: 371 TNQPGLLPLPLDSSNILQGLDGKHLPRPSNVSVWPLSKLLW 249 T QPG+ P P + S +LQG DG P P N S +P SK W Sbjct: 341 TYQPGMFPDPSEVSTMLQGSDGMQSPVPLNRSRFPFSK*SW 219 Score = 43.2 bits (88), Expect(2) = 2e-11 Identities = 20/44 (45%), Positives = 24/44 (54%) Frame = -2 / -2 Query: 242 WPQGFRLSITSFFPFAVLTDKDIRASVPASSLFPVVTNITNSHC 111 WPQ +L I S P A T + RA VPA V+T I+N HC Sbjct: 206 WPQDSKLVIVSVGPLAARTCSETRALVPAYHRPSVLTRISNVHC 75
>LOC_Os04g38390:12004.t03410:unspliced-genomic wound/stress protein, putative, expressed| Length = 1105 Score = 100 bits (212), Expect(2) = 3e-25 Identities = 39/85 (45%), Positives = 53/85 (62%) Frame = +1 / +3 Query: 247 GHNNFERGHTDTFEGRGKCLPSKPCRMLLESNGKGNKPGWFVDKVEFSQIEPNLSVKQKT 426 GH+ +ERG+ D F GRG C+ PCRM L S+G G GW+ + +E + P+L Q+ Sbjct: 462 GHDYYERGNLDIFSGRGPCMRQAPCRMNLTSDGTGPHHGWYCNYLEATVTGPHLGCAQQL 641 Query: 427 FKVNRWLARDVSPGTLFVVVDDCPK 501 F V +WLA D SP L+ VVD+C K Sbjct: 642 FTVEQWLATDASPYRLYAVVDNCNK 716 Score = 35.0 bits (70), Expect(2) = 3e-25 Identities = 15/43 (34%), Positives = 24/43 (55%) Frame = +1 / +3 Query: 112 QCEFVILVTTGNKEDAGTDARISLSVSTANGKKLVIESLKPWG 240 +C + I V TG GTD+ I +++ A+G + I L+ WG Sbjct: 318 KCVYTIYVRTGTIWKGGTDSVIGVTLLGADGSGVRIRDLERWG 446 Score = 44.1 bits (90), Expect = 0.001 Identities = 29/83 (34%), Positives = 37/83 (44%) Frame = -2 / -1 Query: 494 QSSTTTKRVPGDTSRASHLFTLNVFCFTDKFGSIWLNSTLSTNQPGLLPLPLDSSNILQG 315 Q STT R GD S ASH T+ C ++G + + S QP P+P + I G Sbjct: 709 QLSTTA*RR*GDASVASHCSTVKSCCAQPRWGPVTVASR*LQYQPWCGPVPSEVRFIRHG 530 Query: 314 LDGKHLPRPSNVSVWPLSKLLWP 246 PRP +S P S WP Sbjct: 529 AWRMQGPRPLKMSRLPRS**SWP 461
>LOC_Os04g38360:12004.t03407:unspliced-genomic wound/stress protein, putative, expressed| Length = 689 Score = 85.4 bits (180), Expect(2) = 5e-25 Identities = 36/85 (42%), Positives = 44/85 (51%) Frame = +1 / +3 Query: 247 GHNNFERGHTDTFEGRGKCLPSKPCRMLLESNGKGNKPGWFVDKVEFSQIEPNLSVKQKT 426 GH+ FER + D F GRG CL + CRM L SNG G GWF VE + P+ + Sbjct: 396 GHDYFERSNVDIFSGRGPCLGAPVCRMKLVSNGAGEHHGWFCKSVEVTVAGPHARCNRAA 575 Query: 427 FKVNRWLARDVSPGTLFVVVDDCPK 501 F V +WLA D P L+ C K Sbjct: 576 FDVQQWLATDAPPYQLYAERSVCGK 650 Score = 49.2 bits (101), Expect(2) = 5e-25 Identities = 22/53 (41%), Positives = 31/53 (58%) Frame = +1 / +3 Query: 82 LALTQSTAYAQCEFVILVTTGNKEDAGTDARISLSVSTANGKKLVIESLKPWG 240 L L ST QC + + V TG+ AGTDA I + + TA G ++I +L+ WG Sbjct: 222 LLLPGSTGSNQCVYTLYVETGSIWKAGTDAAIGVELYTAAGNGILIRNLQAWG 380 Score = 45.1 bits (92), Expect = 5e-04 Identities = 26/73 (35%), Positives = 34/73 (46%) Frame = -2 / -2 Query: 464 GDTSRASHLFTLNVFCFTDKFGSIWLNSTLSTNQPGLLPLPLDSSNILQGLDGKHLPRPS 285 G S ASH +T N +G + ST N P P PL++S + Q +H PRP Sbjct: 613 GGASVASHCWTSNAALLHLAWGPATVTSTDLQNHPWCSPAPLETSFMRQTGAPRHGPRPL 434 Query: 284 NVSVWPLSKLLWP 246 +S SK WP Sbjct: 433 KMSTLLRSK*SWP 395
>LOC_Os04g38370:12004.t03408:unspliced-genomic dehydration stress-induced protein, putative| Length = 659 Score = 90.9 bits (192), Expect(2) = 2e-23 Identities = 37/88 (42%), Positives = 47/88 (53%) Frame = +1 / +3 Query: 247 GHNNFERGHTDTFEGRGKCLPSKPCRMLLESNGKGNKPGWFVDKVEFSQIEPNLSVKQKT 426 GH+ +ERG+ D F GR CLPS PCRM L S+G G GW+ VE + P+ + Sbjct: 375 GHDYYERGNVDVFSGRAPCLPSPPCRMNLTSDGAGAHHGWYCKSVEVTATGPHAGCAKAA 554 Query: 427 FKVNRWLARDVSPGTLFVVVDDCPK*PP 510 F V +WLA D P L+ C K P Sbjct: 555 FDVEQWLATDAPPYQLYAERSVCAKSRP 638 Score = 38.2 bits (77), Expect(2) = 2e-23 Identities = 15/43 (34%), Positives = 24/43 (55%) Frame = +1 / +3 Query: 112 QCEFVILVTTGNKEDAGTDARISLSVSTANGKKLVIESLKPWG 240 +C + + V TG AGTDA I + ++ A+G + L+ WG Sbjct: 231 ECVYTLYVETGWIWKAGTDAAIGVELAAADGSGFAVGDLERWG 359 Score = 41.4 bits (84), Expect = 0.007 Identities = 24/68 (35%), Positives = 29/68 (42%) Frame = -2 / -2 Query: 464 GDTSRASHLFTLNVFCFTDKFGSIWLNSTLSTNQPGLLPLPLDSSNILQGLDGKHLPRPS 285 G S ASH T N +G + + ST P P P + I G DG+H RP Sbjct: 592 GGASVASHCSTSNAALAHPAWGPVAVTSTDLQYHPWCAPAPSEVRFIRHGGDGRHGARPL 413 Query: 284 NVSVWPLS 261 N S P S Sbjct: 412 NTSTLPRS 389
>LOC_Os02g51710:12002.t04752:unspliced-genomic wound/stress protein, putative, expressed| Length = 1082 Score = 83.5 bits (176), Expect(2) = 3e-22 Identities = 33/84 (39%), Positives = 48/84 (57%) Frame = +1 / +1 Query: 244 KGHNNFERGHTDTFEGRGKCLPSKPCRMLLESNGKGNKPGWFVDKVEFSQIEPNLSVKQK 423 +GH+ FERG+ D F GRG C+ + PC M + S+G G GW+ + VE + + Q+ Sbjct: 433 EGHSYFERGNLDIFSGRGPCMAAPPCWMRVASDGTGPHHGWYCNYVEVTVTGAHKGCAQQ 612 Query: 424 TFKVNRWLARDVSPGTLFVVVDDC 495 F V +WLA D +P L + D C Sbjct: 613 LFTVEQWLATDAAPYKLEAIRDKC 684 Score = 41.4 bits (84), Expect(2) = 3e-22 Identities = 16/43 (37%), Positives = 26/43 (60%) Frame = +1 / +1 Query: 112 QCEFVILVTTGNKEDAGTDARISLSVSTANGKKLVIESLKPWG 240 +C + + + TG+ AGTDA I+L ++ A+G + I L WG Sbjct: 292 ECVYTVYIRTGSIWKAGTDANITLELAGADGNGVGITDLPSWG 420 Score = 46.4 bits (95), Expect = 2e-04 Identities = 26/73 (35%), Positives = 33/73 (45%) Frame = -2 / -1 Query: 464 GDTSRASHLFTLNVFCFTDKFGSIWLNSTLSTNQPGLLPLPLDSSNILQGLDGKHLPRPS 285 G S ASH T+N C + + ST P P+P D++ I G H PRP Sbjct: 653 GAASVASHCSTVNSCCAHPLCAPVTVTST*LQYHPWCGPVPSDATRIQHGGAAMHGPRPL 474 Query: 284 NVSVWPLSKLLWP 246 +S P SK WP Sbjct: 473 KMSRLPRSK*EWP 435
>LOC_Os01g42980:12001.t03814:unspliced-genomic structural constituent of ribosome, putative, expressed| Length = 2903 Score = 37.7 bits (76), Expect = 0.088 Identities = 12/24 (50%), Positives = 17/24 (70%) Frame = -2 / +3 Query: 275 VWPLSKLLWPFWPQGFRLSITSFF 204 VW LS++LWP+W G R ++ FF Sbjct: 234 VWTLSQVLWPWWAGGRRAALVPFF 305
>LOC_Os10g29620:12010.t02302:unspliced-genomic protein kinase APK1B, chloroplast precursor, putative, expressed| Length = 3254 Score = 35.9 bits (72), Expect = 0.31 Identities = 15/29 (51%), Positives = 15/29 (51%) Frame = +2 / +3 Query: 395 SSQICP*SRRHSR*IGGLHAMCHRVPSLW 481 SSQ P SR H R G A CHR P W Sbjct: 813 SSQRLPRSRAHRRGTGATRASCHRTPRRW 899
>LOC_Os10g25230:12010.t01945:unspliced-genomic ZIM motif family protein, expressed| Length = 1019 Score = 35.9 bits (72), Expect = 0.31 Identities = 13/20 (65%), Positives = 15/20 (75%) Frame = -3 / +3 Query: 277 RCGLSRSCCGPSGPKVSGSR 218 RCG SRSC GP+ P+ SG R Sbjct: 219 RCGHSRSCRGPTSPETSGRR 278
>LOC_Os04g20180:12004.t01756:unspliced-genomic expressed protein| Length = 7520 Score = 35.9 bits (72), Expect = 0.31 Identities = 13/36 (36%), Positives = 21/36 (58%) Frame = +3 / -2 Query: 48 RQNEDFVGPISPCSHSKHCLCAMRICYIGHNRK*RR 155 RQ+ +F GP+S +H C C + +C + N K +R Sbjct: 2191 RQS*EFAGPVSEEAHRGECACVVSLCIVLCNSKKKR 2084 Score = 33.6 bits (67), Expect = 1.5 Identities = 13/33 (39%), Positives = 19/33 (57%) Frame = +3 / -2 Query: 48 RQNEDFVGPISPCSHSKHCLCAMRICYIGHNRK 146 RQ+ +FVG +S SH C C + +C + N K Sbjct: 1987 RQS*EFVGLVSEESHRGECACVVSLCIVMCNSK 1889
>LOC_Os12g14290:12012.t01294:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass| Length = 6186 Score = 35.4 bits (71), Expect = 0.43 Identities = 14/30 (46%), Positives = 16/30 (53%) Frame = -1 / -2 Query: 582 FHKHHGHGTVHACKMMYS*LPYGHGWLLGT 493 FH HH H +H CK + * G WLL T Sbjct: 2078 FHSHHHHYPIHICKDKHD*PF*GSSWLLQT 1989
>LOC_Os02g25090:12002.t02206:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass| Length = 3700 Score = 35.0 bits (70), Expect = 0.59 Identities = 13/33 (39%), Positives = 16/33 (48%) Frame = -1 / -3 Query: 582 FHKHHGHGTVHACKMMYS*LPYGHGWLLGTVIH 484 F HH H +H CK + * WLL T +H Sbjct: 1745 FRSHHHHHPIHICKDRHD*PFQSSSWLLQTSVH 1647
>LOC_Os08g12350:12008.t01115:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass| Length = 6435 Score = 29.9 bits (59), Expect(2) = 0.74 Identities = 11/24 (45%), Positives = 17/24 (70%) Frame = +2 / -1 Query: 290 AAVSVYRPNLAGCCSSLMVKVTNP 361 + V+ P+LAGCCSS + + T+P Sbjct: 228 SGVAATTPSLAGCCSSPVRRPTSP 157 Score = 27.2 bits (53), Expect(2) = 0.74 Identities = 10/21 (47%), Positives = 14/21 (66%) Frame = +2 / -1 Query: 86 LSLKALPMRNANLLYWSQQEI 148 LS P+ N++L YWSQQ + Sbjct: 5052 LSQGKYPLSNSSL*YWSQQHV 4990
>LOC_Os12g16890:12012.t01542:unspliced-genomic prolamin PPROL 17 precursor, putative, expressed| Length = 730 Score = 31.8 bits (63), Expect(2) = 0.84 Identities = 13/28 (46%), Positives = 14/28 (50%) Frame = +3 / +3 Query: 45 TRQNEDFVGPISPCSHSKHCLCAMRICY 128 T NED SPC CLCA+ CY Sbjct: 51 THHNEDHFLLCSPCYCCMQCLCAV*CCY 134 Score = 22.1 bits (42), Expect(2) = 0.84 Identities = 9/22 (40%), Positives = 10/22 (45%) Frame = +2 / +2 Query: 449 HAMCHRVPSLWLWMTVPSNHPC 514 HA+ S W SNHPC Sbjct: 197 HAVSS*GSSAAQWQPPSSNHPC 262
>LOC_Os03g39720:12003.t03408:unspliced-genomic hypothetical protein| Length = 1292 Score = 33.6 bits (67), Expect = 1.5 Identities = 12/28 (42%), Positives = 18/28 (64%) Frame = +1 / +3 Query: 157 AGTDARISLSVSTANGKKLVIESLKPWG 240 AGTDA IS+ ++ A+G + L+ WG Sbjct: 891 AGTDAAISVELTAADGSGFAVRDLERWG 974
>LOC_Os11g01875:12011.t00085:unspliced-genomic expressed protein| Length = 5768 Score = 33.1 bits (66), Expect = 2.1 Identities = 13/32 (40%), Positives = 20/32 (62%) Frame = -2 / +1 Query: 440 LFTLNVFCFTDKFGSIWLNSTLSTNQPGLLPL 345 L+T++ FCF WLN++ S++QP PL Sbjct: 3454 LYTMDRFCFIILTDCCWLNASSSSDQPLTCPL 3549
>LOC_Os06g21250:12006.t01942:unspliced-genomic glycine-rich cell wall structural protein precursor, putative,| expressed Length = 1240 Score = 33.1 bits (66), Expect = 2.1 Identities = 14/41 (34%), Positives = 20/41 (48%) Frame = -3 / +3 Query: 373 PQTNRVCYLYH*TRATSCKVWTVNTYRGPQMYRCGLSRSCC 251 P + C L+H* +CKV+ + T Y CG S + C Sbjct: 1110 PNISEWCILFH*YILIACKVYLITTNTFIAWYICGKSETHC 1232
>LOC_Os03g24820:12003.t02174:unspliced-genomic expressed protein| Length = 2675 Score = 33.1 bits (66), Expect = 2.1 Identities = 16/40 (40%), Positives = 20/40 (50%) Frame = -3 / +2 Query: 337 TRATSCKVWTVNTYRGPQMYRCGLSRSCCGPSGPKVSGSR 218 T A S W +T R P RC +R C PS P +G+R Sbjct: 1169 TLAPSSGSWR*STGRAPGRRRCAGARPRCCPSSPTRAGTR 1288
>LOC_Os11g27380:12011.t02352:unspliced-genomic expressed protein| Length = 382 Score = 33.1 bits (66), Expect = 2.1 Identities = 13/44 (29%), Positives = 23/44 (52%) Frame = +1 / +2 Query: 112 QCEFVILVTTGNKEDAGTDARISLSVSTANGKKLVIESLKPWGQ 243 +C + + V TG AGTDA I + ++ + + L+ WG+ Sbjct: 227 ECVYTLYVETGWIWMAGTDAAIGVELAAVDSSGFAVGDLERWGR 358
>LOC_Os04g18330:12004.t01576:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass| Length = 7735 Score = 33.1 bits (66), Expect = 2.1 Identities = 12/32 (37%), Positives = 16/32 (50%) Frame = -1 / -2 Query: 579 HKHHGHGTVHACKMMYS*LPYGHGWLLGTVIH 484 H HH H +H C+ + * WLL T +H Sbjct: 2991 HHHHHHDQIHICRDRHD*PF*SSSWLLQTSVH 2896
>LOC_Os05g24460:12005.t02103:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 6157 Score = 32.7 bits (65), Expect = 2.9 Identities = 17/54 (31%), Positives = 29/54 (53%) Frame = -2 / -1 Query: 464 GDTSRASHLFTLNVFCFTDKFGSIWLNSTLSTNQPGLLPLPLDSSNILQGLDGK 303 G+ +H+FT+ V FT + G+I N+T+ ++PG L +L LD + Sbjct: 5572 GEAELDAHVFTVVVEEFTSELGAIIRNNTVRHSKPGRDALNEFKCGVLIDLDDR 5411
>LOC_Os11g10540:12011.t00944:unspliced-genomic expressed protein| Length = 3805 Score = 32.7 bits (65), Expect = 2.9 Identities = 11/20 (55%), Positives = 12/20 (60%) Frame = +1 / -2 Query: 583 LNKVCTVACMLLCVNYVLYF 642 L VC AC L+C Y LYF Sbjct: 3177 LRHVCCAACCLICCTYTLYF 3118
>LOC_Os07g42280:12007.t03882:unspliced-genomic von Willebrand factor type A domain containing protein, expressed| Length = 7302 Score = 27.2 bits (53), Expect(2) = 3.6 Identities = 14/32 (43%), Positives = 16/32 (50%) Frame = -3 / -3 Query: 490 HPQPQRGYPVTHRVQATYSP*MSSASRTNLAR 395 HPQPQR P A +P + AS T AR Sbjct: 124 HPQPQRRGPSPPVASAAAAPPAAPASSTASAR 29 Score = 22.1 bits (42), Expect(2) = 3.6 Identities = 7/10 (70%), Positives = 8/10 (80%) Frame = -1 / -2 Query: 522 PYGHGWLLGT 493 PY +GW LGT Sbjct: 251 PYTYGW*LGT 222
>LOC_Os09g26780:12009.t02357:unspliced-genomic pnFL-2, putative, expressed| Length = 1938 Score = 27.2 bits (53), Expect(2) = 3.7 Identities = 8/12 (66%), Positives = 10/12 (83%) Frame = +3 / +1 Query: 78 SPCSHSKHCLCA 113 SPC +KHC+CA Sbjct: 1660 SPCFGNKHCVCA 1695 Score = 25.8 bits (50), Expect(2) = 3.7 Identities = 12/45 (26%), Positives = 17/45 (37%) Frame = +1 / +1 Query: 538 HLTCVNGTVTVMFVELNKVCTVACMLLCVNYVLYFNKATSSLFFL 672 H C N + V F +N + T+ Y+ S FFL Sbjct: 1681 HCVCANSSFLVRFRRINYIVTILAPCCLRIYMFNMGHIFVSYFFL 1815
>LOC_Os10g18060:12010.t01359:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 5414 Score = 32.2 bits (64), Expect = 4.0 Identities = 13/35 (37%), Positives = 18/35 (51%) Frame = -2 / -1 Query: 263 SKLLWPFWPQGFRLSITSFFPFAVLTDKDIRASVP 159 S++LW FW RL+ T PF L ++ S P Sbjct: 2081 SQILWSFWGTHIRLTCTQNGPFVTLGNRTAYVSSP 1977
>LOC_Os04g48030:12004.t04324:unspliced-genomic heat shock factor protein 4, putative, expressed| Length = 1838 Score = 32.2 bits (64), Expect = 4.0 Identities = 17/53 (32%), Positives = 23/53 (43%) Frame = +3 / +1 Query: 120 ICYIGHNRK*RRCGHRRPYIFVGEHRKWKEAGYREPETLGPEGPQQLRERPHR 278 +C+ +R+ R G P GE R GYR LGPE + R +R Sbjct: 382 VCWCRDSRRWWRIGGSSPTTASGEGRSTCSVGYRGGRGLGPEARGRRRRGAYR 540
>LOC_Os03g03570:12003.t00239:unspliced-genomic ATP binding protein, putative, expressed| Length = 4864 Score = 32.2 bits (64), Expect = 4.0 Identities = 14/44 (31%), Positives = 20/44 (45%) Frame = +3 / -2 Query: 33 HPTRTRQNEDFVGPISPCSHSKHCLCAMRICYIGHNRK*RRCGH 164 HP +T N V +H C C GHN++*++C H Sbjct: 3129 HPKKTEINPHRVW*FDQNNHLFRCKSTFYKCDWGHNKE*KQCDH 2998
>LOC_Os08g19920:12008.t01810:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass| Length = 3878 Score = 32.2 bits (64), Expect = 4.0 Identities = 12/32 (37%), Positives = 17/32 (53%) Frame = -1 / -1 Query: 579 HKHHGHGTVHACKMMYS*LPYGHGWLLGTVIH 484 H +H H +H CK ++ * WLL T +H Sbjct: 2432 HHYHHHHPIHICKDIHD*PF*SSSWLLQTSVH 2337
>LOC_Os07g11260:12007.t01000:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass| Length = 6498 Score = 32.2 bits (64), Expect = 4.0 Identities = 12/33 (36%), Positives = 15/33 (45%) Frame = -1 / -2 Query: 582 FHKHHGHGTVHACKMMYS*LPYGHGWLLGTVIH 484 F HH H +H CK + * W L T +H Sbjct: 1907 FRSHHRHHPIHTCKGRHD*PS*SFSWPLQTSVH 1809
>LOC_Os03g43390:12003.t03734:unspliced-genomic Leucine Rich Repeat family protein, expressed| Length = 7582 Score = 32.2 bits (64), Expect = 4.0 Identities = 16/41 (39%), Positives = 20/41 (48%) Frame = -1 / -2 Query: 444 PPIHLECLLLHGQIWLDLAELHFVHKPTGFVTFTIRLEQHP 322 PP L LLL Q+ L LH +H P + IR+ HP Sbjct: 402 PPAQLHRLLLLLQLLLAALPLHHLHLPLPAPSHRIRIGNHP 280
>LOC_Os08g08530:12008.t00739:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 1163 Score = 28.6 bits (56), Expect(2) = 4.3 Identities = 11/19 (57%), Positives = 12/19 (63%) Frame = +1 / +1 Query: 439 RWLARDVSPGTLFVVVDDC 495 RW A +SP T FVV D C Sbjct: 1018 RW*ASSLSPSTAFVVADWC 1074 Score = 23.5 bits (45), Expect(2) = 4.3 Identities = 7/14 (50%), Positives = 8/14 (57%) Frame = +3 / +2 Query: 81 PCSHSKHCLCAMRI 122 PC H CLC R+ Sbjct: 851 PCLHRPACLCRRRL 892
>LOC_Os02g26590:12002.t02353:unspliced-genomic hypothetical protein| Length = 249 Score = 31.8 bits (63), Expect = 5.4 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = +2 / -3 Query: 275 PIHLRAAVSVYRPNLAGCCSSLMVKVTNP 361 P + AAV RP +AGCC+S++ V P Sbjct: 91 PPPMPAAVPSSRPRVAGCCASIVSPVAVP 5
>LOC_Os11g20510:12011.t01820:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass| Length = 6219 Score = 31.8 bits (63), Expect = 5.5 Identities = 12/32 (37%), Positives = 15/32 (46%) Frame = -1 / -3 Query: 579 HKHHGHGTVHACKMMYS*LPYGHGWLLGTVIH 484 H HH H +H C+ + * WLL T H Sbjct: 1783 HHHHHHHQIHRCRERHD*PF*SFSWLLQTFAH 1688
>LOC_Os11g11820:12011.t01069:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass| Length = 3207 Score = 31.8 bits (63), Expect = 5.5 Identities = 13/38 (34%), Positives = 17/38 (44%) Frame = -1 / -3 Query: 597 TYFI*FHKHHGHGTVHACKMMYS*LPYGHGWLLGTVIH 484 T + F HH H +H CK + * W L T +H Sbjct: 2017 TRLLLFQNHHHHHPIHICKEKHD*PF*NSSWPLQTFVH 1904
>LOC_Os08g30940:12008.t02844:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass| Length = 2886 Score = 31.8 bits (63), Expect = 5.5 Identities = 12/31 (38%), Positives = 16/31 (51%) Frame = -1 / -3 Query: 576 KHHGHGTVHACKMMYS*LPYGHGWLLGTVIH 484 +HH H +H CK + * WLL T +H Sbjct: 2479 RHHHHHPIHICKDRHD*PF*SSSWLLQTSVH 2387
>LOC_Os06g10450:12006.t00923:unspliced-genomic expressed protein| Length = 2048 Score = 31.8 bits (63), Expect = 5.5 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = +1 / +3 Query: 157 AGTDARISLSVSTANGKKLVIESLKPWG 240 AGTDA I + ++ A+G + L+ WG Sbjct: 873 AGTDAAIGVELTAADGSGFAVRDLERWG 956
>LOC_Os06g09660:12006.t00844:unspliced-genomic auxin response factor 19, putative, expressed| Length = 5686 Score = 24.4 bits (47), Expect(2) = 6.5 Identities = 10/21 (47%), Positives = 12/21 (57%) Frame = -3 / -2 Query: 325 SCKVWTVNTYRGPQMYRCGLS 263 S K+W N Y+ MYR LS Sbjct: 1260 SKKMWQ*NKYKTKSMYRYSLS 1198 Score = 24.0 bits (46), Expect(2) = 6.5 Identities = 10/25 (40%), Positives = 13/25 (52%) Frame = -3 / -3 Query: 382 PLCPQTNRVCYLYH*TRATSCKVWT 308 P CP+T + +R T CKV T Sbjct: 1355 PPCPRTETSLAVQRKSRKTRCKVLT 1281
>LOC_Os07g01040:12007.t00004:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 2834 Score = 29.0 bits (57), Expect(2) = 6.9 Identities = 15/54 (27%), Positives = 27/54 (50%) Frame = -2 / -1 Query: 464 GDTSRASHLFTLNVFCFTDKFGSIWLNSTLSTNQPGLLPLPLDSSNILQGLDGK 303 G+ +H+F + FT + G+I N+T+ ++PG L +L LD + Sbjct: 2249 GEAELDAHVFAIIAEEFTSELGAIIRNNTVRHSKPGRDALNEFKCGVLIDLDDR 2088 Score = 23.5 bits (45), Expect(2) = 6.9 Identities = 10/30 (33%), Positives = 15/30 (50%) Frame = -3 / -2 Query: 271 GLSRSCCGPSGPKVSGSR*PASFHLRCSPT 182 G RS CG + P + R + + CSP+ Sbjct: 472 GRPRSHCGKAAPVILRPRGTSGPRVMCSPS 383
>LOC_Os12g03010:12012.t00194:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 6156 Score = 31.3 bits (62), Expect = 7.5 Identities = 16/54 (29%), Positives = 28/54 (51%) Frame = -2 / -1 Query: 464 GDTSRASHLFTLNVFCFTDKFGSIWLNSTLSTNQPGLLPLPLDSSNILQGLDGK 303 G+ +H+F + FT + G+I N+T+ ++PGL L +L LD + Sbjct: 5571 GEAELDAHVFAVVAEEFTSELGAIIRNNTVRHSKPGLDALNEFKCGVLIDLDDR 5410
>LOC_Os10g03370:12010.t00226:unspliced-genomic hypothetical protein| Length = 423 Score = 31.3 bits (62), Expect = 7.5 Identities = 9/19 (47%), Positives = 10/19 (52%) Frame = -2 / -1 Query: 296 PRPSNVSVWPLSKLLWPFW 240 P P WP +LLWP W Sbjct: 141 PLPCRTCPWPPDRLLWPIW 85
>LOC_Os04g03560:12004.t00245:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 6141 Score = 31.3 bits (62), Expect = 7.5 Identities = 16/54 (29%), Positives = 28/54 (51%) Frame = -2 / -1 Query: 464 GDTSRASHLFTLNVFCFTDKFGSIWLNSTLSTNQPGLLPLPLDSSNILQGLDGK 303 G+ +H+F + FT + G+I N+T+ ++PG L S +L LD + Sbjct: 5556 GEAELDAHVFAVVAEEFTSELGAIIRNNTVGHSKPGRDALNEFKSGVLIDLDDR 5395
>LOC_Os03g39510:12003.t03384:unspliced-genomic hypothetical protein| Length = 327 Score = 31.3 bits (62), Expect = 7.5 Identities = 10/21 (47%), Positives = 14/21 (66%) Frame = +2 / +2 Query: 347 KVTNPVGLWTKWSSAKSSQIC 409 K T P+ WTKW S+ S++C Sbjct: 212 KATRPMRRWTKWLSSPLSKLC 274
>LOC_Os02g51400:12002.t04724:unspliced-genomic ATPase, AAA family protein, expressed| Length = 10066 Score = 31.3 bits (62), Expect = 7.5 Identities = 14/29 (48%), Positives = 15/29 (51%) Frame = -3 / -1 Query: 271 GLSRSCCGPSGPKVSGSR*PASFHLRCSP 185 G SR P+GP SR PA RCSP Sbjct: 292 GTSRRSATPAGPSPRASRAPARCIARCSP 206
>LOC_Os01g47660:12001.t04212:unspliced-genomic 60S ribosomal protein L18a, putative, expressed| Length = 1869 Score = 31.3 bits (62), Expect = 7.5 Identities = 14/43 (32%), Positives = 21/43 (48%) Frame = +2 / -3 Query: 68 WSYFSLLSLKALPMRNANLLYWSQQEIKKMRAPTPVYLCR*AP 196 W+ L L++L A L+ W Q + + R VY+C AP Sbjct: 1510 WNCLVLSLLQSLKWTVAVLMIWMQGNLTRWREAISVYICSTAP 1382
>LOC_Os12g24410:12012.t02169:unspliced-genomic hypothetical protein| Length = 7760 Score = 31.3 bits (62), Expect = 7.5 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = -1 / +2 Query: 195 GAHRQRYTGVGARIFFISCCDQ 130 G+HRQ+ TG G +FF S C + Sbjct: 5717 GSHRQQVTGQGIVVFFSSFCSE 5782
>LOC_Os10g06200:12010.t00489:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 7268 Score = 31.3 bits (62), Expect = 7.5 Identities = 13/31 (41%), Positives = 15/31 (48%) Frame = +1 / -2 Query: 280 TFEGRGKCLPSKPCRMLLESNGKGNKPGWFV 372 T+ CLPS CRM LE G P F+ Sbjct: 3358 TYLDSSSCLPSTGCRMYLEGQTHGRMPCGFL 3266
>LOC_Os08g12130:12008.t01093:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass| Length = 6158 Score = 31.3 bits (62), Expect = 7.5 Identities = 12/30 (40%), Positives = 15/30 (50%) Frame = -1 / -2 Query: 573 HHGHGTVHACKMMYS*LPYGHGWLLGTVIH 484 HH H +H CK + * WLL T +H Sbjct: 1774 HHHHHPIHICKDRHD*PF*NSSWLLQTFVH 1685
>LOC_Os08g08710:12008.t00757:unspliced-genomic hypothetical protein| Length = 1876 Score = 31.3 bits (62), Expect = 7.5 Identities = 11/34 (32%), Positives = 22/34 (64%) Frame = +1 / -2 Query: 571 MFVELNKVCTVACMLLCVNYVLYFNKATSSLFFL 672 + V ++ C +ACM LC+ Y + + A++++F L Sbjct: 348 VLVIIHSGCVLACMKLCICYFVIYPTASATVFKL 247
>LOC_Os07g31160:12007.t02803:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 4122 Score = 31.3 bits (62), Expect = 7.5 Identities = 12/23 (52%), Positives = 15/23 (65%) Frame = -1 / +1 Query: 234 RFQALDNQLLSICGAHRQRYTGV 166 R L+N LL ICG+ R YTG+ Sbjct: 2857 RMSELENNLLEICGSLRVTYTGL 2925
>LOC_Os07g20340:12007.t01839:unspliced-genomic ATFP3, putative, expressed| Length = 2350 Score = 31.3 bits (62), Expect = 7.5 Identities = 11/31 (35%), Positives = 19/31 (61%) Frame = -1 / -3 Query: 489 IHNHKEGTR*HIACKPPIHLECLLLHGQIWL 397 +H H + I+CK I L+ +++H QI+L Sbjct: 929 LHKHTKANSTPISCKKKIKLKIVIVHSQIYL 837
>LOC_Os03g12236:12003.t05723:unspliced-genomic chaperone protein dnaJ, putative, expressed| Length = 5187 Score = 31.3 bits (62), Expect = 7.5 Identities = 9/37 (24%), Positives = 24/37 (64%) Frame = +1 / -2 Query: 526 LRIHHLTCVNGTVTVMFVELNKVCTVACMLLCVNYVL 636 LR++ +N + +++ +++ V ++ C+ LC+ Y+L Sbjct: 2336 LRMNTYGTINSSPEILYQKVSSVFSLTCLDLCIEYIL 2226
>LOC_Os01g29850:12001.t02667:unspliced-genomic hypothetical protein| Length = 1814 Score = 31.3 bits (62), Expect = 7.5 Identities = 9/21 (42%), Positives = 15/21 (71%) Frame = -1 / +1 Query: 429 ECLLLHGQIWLDLAELHFVHK 367 +C G IWLDL++LH +++ Sbjct: 580 DCFSAEGYIWLDLSDLHAIYR 642
>LOC_Os04g50140:12004.t04527:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 2518 Score = 29.5 bits (58), Expect(2) = 8.3 Identities = 11/28 (39%), Positives = 15/28 (53%) Frame = +3 / -3 Query: 9 HPWYYY*RHPTRTRQNEDFVGPISPCSH 92 H WY+Y HP Q+++ G S C H Sbjct: 2258 HQWYHYCYHPWSLSQSQNC*GCHSGCLH 2175 Score = 22.6 bits (43), Expect(2) = 8.3 Identities = 5/12 (41%), Positives = 9/12 (75%) Frame = +3 / -2 Query: 594 MYCCMYVIMCKL 629 + CC++ + CKL Sbjct: 1161 LMCCLFCLFCKL 1126
>LOC_Os12g30540:12012.t02761:unspliced-genomic ubiquitin carboxyl-terminal hydrolase 21, putative, expressed| Length = 14696 Score = 27.6 bits (54), Expect(2) = 8.6 Identities = 7/15 (46%), Positives = 11/15 (73%) Frame = +1 / +2 Query: 595 CTVACMLLCVNYVLY 639 CT+ C L+C+ Y L+ Sbjct: 11894 CTIPCQLMCLGYFLF 11938 Score = 26.7 bits (52), Expect(2) = 8.6 Identities = 7/16 (43%), Positives = 11/16 (68%) Frame = +2 / +1 Query: 473 SLWLWMTVPSNHPCPY 520 +L W +P+NHPC + Sbjct: 2452 NLIAWDAIPTNHPCSF 2499
>LOC_Os09g18410:12009.t01626:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass, expressed| Length = 2915 Score = 24.0 bits (46), Expect(2) = 9.2 Identities = 7/17 (41%), Positives = 9/17 (52%) Frame = +2 / +2 Query: 455 MCHRVPSLWLWMTVPSN 505 +C R PS W W S+ Sbjct: 1751 ICSRAPSQWWWTNTSSH 1801 Score = 24.0 bits (46), Expect(2) = 9.2 Identities = 6/16 (37%), Positives = 12/16 (75%) Frame = +3 / +1 Query: 597 YCCMYVIMCKLCIVLQ 644 +CC +MC+L ++L+ Sbjct: 1828 HCCTAYLMCRLLLLLE 1875 Database: tigr.seq.out Posted date: Jul 20, 2007 8:58 AM Number of letters in database: 166,841,660 Number of sequences in database: 56,278 Lambda K H 0.318 0.134 0.401 Matrix: BLOSUM62 Number of Sequences: 56278 Number of Hits to DB: 328,618,542 Number of extensions: 5878152 Number of successful extensions: 24148 Number of sequences better than 10.0: 56 Length of query: 238 Length of database: 55,613,886 Length adjustment: 49 Effective length of query: 189 Effective length of database: 52,856,264 Effective search space: 9989833896 Effective search space used: 9989833896 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits)
