ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf91b07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC102603.11| Mus musculus chromosome 14, clone RP23-385I17, c... 48 0.043
2emb|AL732581.5| Mouse DNA sequence from clone RP24-262H17 on chr... 46 0.17
3emb|BX950863.8| Zebrafish DNA sequence from clone DKEY-68K17 in ... 42 2.7
4gb|AC147886.2| Xenopus tropicalis clone CH216-134O16, complete s... 42 2.7
5emb|CT009670.5| Pig DNA sequence from clone CH242-275C12 on chro... 42 2.7
6emb|AL353685.23| Human DNA sequence from clone RP11-31J20 on chr... 42 2.7
7emb|Y16421.1|TLC16421 Tomato leaf curl New Delhi virus-[Lucknow]... 42 2.7
8gb|AF287262.1|AF287262 Homo sapiens ATP-binding cassette 1 sub-f... 42 2.7
9gb|AF275948.1|AF275948 Homo sapiens ABCA1 (ABCA1) gene, complete... 42 2.7
10emb|AJ875157.1| Tomato leaf curl New Delhi virus-Severe[Jessore]... 42 2.7

>gb|AC102603.11| Mus musculus chromosome 14, clone RP23-385I17, complete sequence
          Length = 204565
 Score = 48.1 bits (24), Expect = 0.043
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 415    aagcagaagacattcaaggtgaat 438
              ||||||||||||||||||||||||
Sbjct: 147977 aagcagaagacattcaaggtgaat 148000



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>emb|AL732581.5| Mouse DNA sequence from clone RP24-262H17 on chromosome 4, complete
             sequence
          Length = 137493

 Score = 46.1 bits (23), Expect = 0.17
 Identities = 30/31 (96%), Gaps = 1/31 (3%)
 Strand = Plus / Plus

                                            
Query: 603   tgcatgtatgttatt-atgtgtaaactatgt 632
             ||||||||||||||| |||||||||||||||
Sbjct: 46213 tgcatgtatgttatttatgtgtaaactatgt 46243



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>emb|BX950863.8| Zebrafish DNA sequence from clone DKEY-68K17 in linkage group 6,
             complete sequence
          Length = 52390

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 130   ttggtcacaacaggaaataaa 150
             |||||||||||||||||||||
Sbjct: 43771 ttggtcacaacaggaaataaa 43751



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>gb|AC147886.2| Xenopus tropicalis clone CH216-134O16, complete sequence
          Length = 150155

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 86    ctctcactcaaagcactgcct 106
             |||||||||||||||||||||
Sbjct: 52699 ctctcactcaaagcactgcct 52719



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>emb|CT009670.5| Pig DNA sequence from clone CH242-275C12 on chromosome 17, complete
             sequence
          Length = 27990

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 571   atgtttgtggaattaaataaa 591
             |||||||||||||||||||||
Sbjct: 14841 atgtttgtggaattaaataaa 14861



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>emb|AL353685.23| Human DNA sequence from clone RP11-31J20 on chromosome 9 Contains part
             of the ABCA1 gene for ATP-binding cassette sub-family A
             (ABC1) member 1, complete sequence
          Length = 129608

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 571   atgtttgtggaattaaataaa 591
             |||||||||||||||||||||
Sbjct: 51633 atgtttgtggaattaaataaa 51653



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>emb|Y16421.1|TLC16421 Tomato leaf curl New Delhi virus-[Lucknow] partial DNA-A sequence
          Length = 2739

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 139  acaggaaataaagaagatgcg 159
            |||||||||||||||||||||
Sbjct: 2174 acaggaaataaagaagatgcg 2154



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>gb|AF287262.1|AF287262 Homo sapiens ATP-binding cassette 1 sub-family A member 1 (ABCA1) and
              SNAP protein genes, complete cds
          Length = 201144

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 571    atgtttgtggaattaaataaa 591
              |||||||||||||||||||||
Sbjct: 127927 atgtttgtggaattaaataaa 127907



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>gb|AF275948.1|AF275948 Homo sapiens ABCA1 (ABCA1) gene, complete cds
          Length = 149034

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 571   atgtttgtggaattaaataaa 591
             |||||||||||||||||||||
Sbjct: 94606 atgtttgtggaattaaataaa 94586



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>emb|AJ875157.1| Tomato leaf curl New Delhi virus-Severe[Jessore] segment DNA-A,
            complete sequence
          Length = 2740

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 139  acaggaaataaagaagatgcg 159
            |||||||||||||||||||||
Sbjct: 2167 acaggaaataaagaagatgcg 2147


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 115,944,764
Number of extensions: 6226025
Number of successful extensions: 130332
Number of sequences better than 10.0: 10
Number of HSP's gapped: 130331
Number of HSP's successfully gapped: 10
Length of query: 714
Length of database: 18,610,659,111
Length adjustment: 22
Effective length of query: 692
Effective length of database: 18,508,616,841
Effective search space: 12807962853972
Effective search space used: 12807962853972
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
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