>Q69IL4:RF2A_ORYSJ Transcription factor RF2a - Oryza sativa subsp. japonica (Rice)|
          Length = 380
 Score = 55.8 bits (133), Expect = 5e-07
 Identities = 29/82 (35%), Positives = 51/82 (62%)
 Frame = +3

Query: 867  RRSGQRSRVRKLQYIADLERTVDSLQNMGADLAVRVASHFQLRNALSMENKQLRRQIASL 1046
            R+S  RS+ RK++YIA+LER V +LQ     L+ ++A   +  + L+ EN +L+ ++ ++
Sbjct: 192  RQSAARSKERKMRYIAELERKVQTLQTEATTLSAQLALLQRDTSGLTTENSELKLRLQTM 251

Query: 1047 QQAKLMKDGQTHFLKKETERLK 1112
            +Q   ++D     LK E +RLK
Sbjct: 252  EQQVHLQDALNDTLKSEVQRLK 273

>Q6S4P4:RF2B_ORYSJ Transcription factor RF2b - Oryza sativa subsp. japonica (Rice)|
          Length = 329

 Score = 54.7 bits (130), Expect = 1e-06
 Identities = 29/82 (35%), Positives = 48/82 (58%)
 Frame = +3

Query: 867  RRSGQRSRVRKLQYIADLERTVDSLQNMGADLAVRVASHFQLRNALSMENKQLRRQIASL 1046
            R+S  RS+ RK +YI +LER V +LQ     L+ ++    +    LS EN +L+ ++ ++
Sbjct: 143  RQSAARSKERKARYITELERKVQTLQTEATTLSAQLTLFQRDTTGLSAENAELKIRLQAM 202

Query: 1047 QQAKLMKDGQTHFLKKETERLK 1112
            +Q   ++D     LK+E ERLK
Sbjct: 203  EQQAQLRDALNDALKQELERLK 224

>Q04088:POF21_ARATH Probable transcription factor PosF21 - Arabidopsis thaliana|
            (Mouse-ear cress)
          Length = 398

 Score = 51.2 bits (121), Expect = 1e-05
 Identities = 27/82 (32%), Positives = 49/82 (59%)
 Frame = +3

Query: 867  RRSGQRSRVRKLQYIADLERTVDSLQNMGADLAVRVASHFQLRNALSMENKQLRRQIASL 1046
            R+S  RS+ RK +YI +LER V +LQ     L+ ++    +  N L++EN +L+ ++ ++
Sbjct: 212  RQSAARSKERKTRYIFELERKVQTLQTEATTLSAQLTLLQRDTNGLTVENNELKLRLQTM 271

Query: 1047 QQAKLMKDGQTHFLKKETERLK 1112
            +Q   ++D     LK+E + LK
Sbjct: 272  EQQVHLQDELNEALKEEIQHLK 293

>O61308:PUMA_PARUN 227 kDa spindle- and centromere-associated protein - Parascaris|
            univalens
          Length = 1955

 Score = 35.4 bits (80), Expect = 0.66
 Identities = 18/62 (29%), Positives = 35/62 (56%)
 Frame = +3

Query: 909  IADLERTVDSLQNMGADLAVRVASHFQLRNALSMENKQLRRQIASLQQAKLMKDGQTHFL 1088
            I  LE+T+ +L+N   +L  ++++    R AL+ E +++RR+I  ++  K   D Q   +
Sbjct: 1614 IIGLEKTIGTLRNTETELRAQLSTAADERKALNSELEEMRRRIVQMESEKKDVDNQLEEV 1673

Query: 1089 KK 1094
             K
Sbjct: 1674 NK 1675

>P12959:OP2_MAIZE Regulatory protein opaque-2 - Zea mays (Maize)|
          Length = 453

 Score = 35.0 bits (79), Expect = 0.86
 Identities = 20/63 (31%), Positives = 36/63 (57%)
 Frame = +3

Query: 861  TERRSGQRSRVRKLQYIADLERTVDSLQNMGADLAVRVASHFQLRNALSMENKQLRRQIA 1040
            + R S +RSR RK  ++ +LE  V  L+   + L  R+A+  Q  N  +++N+ LR  + 
Sbjct: 234  SNRESARRSRYRKAAHLKELEDQVAQLKAENSCLLRRIAALNQKYNDANVDNRVLRADME 293

Query: 1041 SLQ 1049
            +L+
Sbjct: 294  TLR 296

>Q8W191:HYH_ARATH Transcription factor HY5-like - Arabidopsis thaliana (Mouse-ear|
            cress)
          Length = 149

 Score = 33.1 bits (74), Expect = 3.3
 Identities = 19/57 (33%), Positives = 31/57 (54%)
 Frame = +3

Query: 867  RRSGQRSRVRKLQYIADLERTVDSLQNMGADLAVRVASHFQLRNALSMENKQLRRQI 1037
            R S Q++R RK  Y++DLE   + LQN    L  ++++       L+ EN  LR+ +
Sbjct: 89   RVSAQQARERKKVYVSDLESRANELQNNNDQLEEKIST-------LTNENTMLRKML 138

>Q08229:YO070_YEAST Uncharacterized protein YOL070C - Saccharomyces cerevisiae (Baker's|
           yeast)
          Length = 501

 Score = 33.1 bits (74), Expect = 3.3
 Identities = 33/112 (29%), Positives = 46/112 (41%), Gaps = 1/112 (0%)
 Frame = +1

Query: 364 DDLLADSVKKLNLPLLRRACSDSDAILDAMRTFRVPIFSIEGDLQ-PAGETGDSLDAAVR 540
           DD L  S       +       SD      R  R P     GD+  P G+   S+ +   
Sbjct: 32  DDRLFPSPTTTRTMITEEKADQSDVFKPPSRLLRSPA----GDVSLPPGDNRSSMISNYS 87

Query: 541 GESGSGVEVSCVYGPNSPRQKCRLTSSESSIVNAVLENVPSNSLQYLTIDPS 696
           G    GVEVS V   N  + + R TS +S+ + ++ E V  N L  L + PS
Sbjct: 88  GIIQEGVEVSYVV-KNRQQTQERRTSKDSNSLYSLKEPVSKNELPSLPMLPS 138

>O74833:DNL4_SCHPO DNA ligase 4 - Schizosaccharomyces pombe (Fission yeast)|
          Length = 923

 Score = 32.3 bits (72), Expect = 5.6
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = -3

Query: 485 SIEKIGTRNVLIASKIASESLQALLRSGRFSFFTESARRSSSQHGGS 345
           ++E +G +   I  K+  E +Q  + SG+F F++ +AR  +  +G S
Sbjct: 281 TLEAMGNKPFWIEEKLDGERIQLHMSSGKFQFYSRNARSYTYAYGSS 327

>P93831:CLF_ARATH Polycomb group protein CURLY LEAF - Arabidopsis thaliana (Mouse-ear|
           cress)
          Length = 902

 Score = 32.0 bits (71), Expect = 7.3
 Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
 Frame = -3

Query: 545 SPLTAASNESPV--SPAGCRSPSIEKIGTRNVLIASKIASE---SLQALLRSGRFSFF-- 387
           SP ++A+   P   SPA  R P+ +++      +  K+A++   S++  +   + + F  
Sbjct: 6   SPSSSATRSEPPKDSPAEERGPASKEVSEVIESLKKKLAADRCISIKKRIDENKKNLFAI 65

Query: 386 TESARRSSSQHGGSPKNGS 330
           T+S  RSS + GGS K+GS
Sbjct: 66  TQSFMRSSMERGGSCKDGS 84

>P16120:THRC_YEAST Threonine synthase - Saccharomyces cerevisiae (Baker's yeast)|
          Length = 514

 Score = 32.0 bits (71), Expect = 7.3
 Identities = 35/146 (23%), Positives = 61/146 (41%), Gaps = 8/146 (5%)
 Frame = +1

Query: 502 AGETGDSLDAAVRGESGSGVEVSCVYGPNSPRQKCRLTSSESSIVNAVLENVPSNSLQYL 681
           +G+TG +    +RG+    V +    G  SP Q+ ++T+            VP  ++Q L
Sbjct: 161 SGDTGSAAIYGLRGKKDVSVFILYPTGRISPIQEEQMTT------------VPDENVQTL 208

Query: 682 TIDPSTGLHGNVANAEGDACDD-VNHLDQDKPFKSSYRIQSYNYKNISCICSENAGKYFK 858
           ++   TG   N        C D V  +  DK F S + + + N  N + I ++    ++ 
Sbjct: 209 SV---TGTFDN--------CQDIVKAIFGDKEFNSKHNVGAVNSINWARILAQMTYYFYS 257

Query: 859 ELKGDQAKD-------LGSGNFNTLL 915
             +    KD       + SGNF  +L
Sbjct: 258 FFQATNGKDSKKVKFVVPSGNFGDIL 283

>Q99958:FOXC2_HUMAN Forkhead box protein C2 - Homo sapiens (Human)|
          Length = 501

 Score = 31.6 bits (70), Expect = 9.5
 Identities = 25/76 (32%), Positives = 37/76 (48%)
 Frame = -3

Query: 542 PLTAASNESPVSPAGCRSPSIEKIGTRNVLIASKIASESLQALLRSGRFSFFTESARRSS 363
           P  AAS  +P +P    +P   K   + V+I S+ AS +L  + +    S   ESA + S
Sbjct: 186 PPPAASKGAPATPHLADAP---KEAEKKVVIKSEAASPALPVITKVETLS--PESALQGS 240

Query: 362 SQHGGSPKNGSSDGNL 315
            +   S   GS DG+L
Sbjct: 241 PRSAASTPAGSPDGSL 256

>Q2QI47:USH2A_MOUSE Usherin precursor - Mus musculus (Mouse)|
          Length = 5193

 Score = 31.6 bits (70), Expect = 9.6
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 727 EGDACDDVNHLDQDKPFKSSYRIQSYNYKNISC 825
           EG  CD  + L  DKPF+S   + ++N K   C
Sbjct: 542 EGPQCDRCSPLYNDKPFRSGDNVNAFNCKPCQC 574

>P31226:SAX_RANCA Saxiphilin precursor - Rana catesbeiana (Bull frog)|
          Length = 844

 Score = 31.6 bits (70), Expect = 9.6
 Identities = 39/173 (22%), Positives = 63/173 (36%), Gaps = 19/173 (10%)
 Frame = +1

Query: 466 VPIFSIEGDLQPA---GETGDSLDAAVRGESGSGVEVSCVYGPNSPRQKCRLTSSESSIV 636
           VP    +G+ +P    G TG S      GE         + G  +P  K   T  +  +V
Sbjct: 199 VPQCDEKGNYEPQQFHGSTGYSWCVNAIGEE--------IAGTKTPPGKIPATCQKHDLV 250

Query: 637 N----AVLENVPSNSLQYLTIDPSTGLHGNVANAEG-----DACDDVNHLDQDKPFKSSY 789
                AV     S++ Q+  +      H  V+  +G         +   L  D P K S 
Sbjct: 251 TTCHYAVAMVKKSSAFQFNQLKGKRSCHSGVSKTDGWKALVTVLVEKKLLSWDGPAKESI 310

Query: 790 RIQSYNYKNISCICSENAGKYFKELKGDQAKDLGS-------GNFNTLLILKE 927
           +     + ++SCI         K+ KG++ K+  +       GN+     LKE
Sbjct: 311 QRAMSKFFSVSCIPGATQTNLCKQCKGEEGKNCKNSHDEPYYGNYGAFRCLKE 363

>P35568:IRS1_HUMAN Insulin receptor substrate 1 - Homo sapiens (Human)|
          Length = 1242

 Score = 31.6 bits (70), Expect = 9.6
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +1

Query: 469 PIFSIEGDLQPAGETGDSLDAAVRGESGSGVEVSCVYGPNSPRQK 603
           P+ S  G L P   TGD ++ +  G+S +     C YGP  P+ K
Sbjct: 717 PVESSGGKLLPC--TGDYMNMSPVGDSNTSSPSDCYYGPEDPQHK 759

>Q28224:IRS1_CERAE Insulin receptor substrate 1 - Cercopithecus aethiops (Green|
           monkey) (Grivet)
          Length = 1251

 Score = 31.6 bits (70), Expect = 9.6
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +1

Query: 469 PIFSIEGDLQPAGETGDSLDAAVRGESGSGVEVSCVYGPNSPRQK 603
           P+ S  G L P   TGD ++ +  G+S +     C YGP  P+ K
Sbjct: 715 PVESSGGKLLPC--TGDYMNMSPVGDSNTSSPSDCYYGPEDPQHK 757


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 275,341,729
Number of extensions: 6079302
Number of successful extensions: 16772
Number of sequences better than 10.0: 15
Number of HSP's gapped: 16743
Number of HSP's successfully gapped: 15
Length of query: 520
Length of database: 100,686,439
Length adjustment: 118
Effective length of query: 402
Effective length of database: 68,319,629
Effective search space: 27464490858
Effective search space used: 27464490858
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)