ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf94a04 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001053590.1| Oryza sativa (japonica cultivar-group) Os02g0538900 (Os02g0538900) mRNA, complete cds Length = 1606 Score = 331 bits (167), Expect = 4e-87 Identities = 325/377 (86%), Gaps = 3/377 (0%) Strand = Plus / Plus Query: 865 aaaggcgatcaggccaaagatctagggtccggaaacttcaatacattgctgatcttgaaa 924 ||||||| |||||||||||||| |||||| | |||||||||||||||||||||||||| | Sbjct: 895 aaaggcgctcaggccaaagatcaagggtcagaaaacttcaatacattgctgatcttgaga 954 Query: 925 gaactgtggactctcttcagaacatgggagctgatttggctgtaagagtagcatctcatt 984 ||||||| ||||| ||||||||||| || |||||||||||||| || || ||||||| || Sbjct: 955 gaactgttgactcacttcagaacataggggctgatttggctgtgagggtggcatctcttt 1014 Query: 985 tccagcttcgcaatgctctatcgatggaaaacaagcaactgaggagacagattgctagtc 1044 |||||||||| ||||||||||| ||||||||||||||||||||||| ||||| |||||| Sbjct: 1015 tccagcttcgtaatgctctatcaatggaaaacaagcaactgaggaggcagatcactagtc 1074 Query: 1045 ttcagcaggcaaaactaatgaaggatggtcaaacacatttcttgaagaaggaaactgaga 1104 ||||||||||||||||||| |||||||| ||||| || | ||||||||||||| |||| Sbjct: 1075 ttcagcaggcaaaactaattaaggatggccaaacgcagatgctgaagaaggaaaccgaga 1134 Query: 1105 ggttgaagcagatctctgtgcgtcaccgcaggagcaggagtgtcacttcttgttttgaac 1164 || |||||||| |||| ||||| ||||||||||||||||| ||||| ||||| ||||| Sbjct: 1135 ggctgaagcagctctcagtgcgccaccgcaggagcaggagcgtcacctcttgctttgagg 1194 Query: 1165 cgggctcaatt---ggagcagacccatcagcaatcaattggcagacacttgacatgtcaa 1221 | |||| || |||| ||||||||| || ||||| ||||||| || |||||||||| Sbjct: 1195 ccaactcatttggaggaggagacccatctgcgatcaactggcagatgctcgacatgtcaa 1254 Query: 1222 acctgagcttaaacggc 1238 | || ||||| |||||| Sbjct: 1255 agctcagcttgaacggc 1271 Score = 167 bits (84), Expect = 2e-37 Identities = 189/224 (84%) Strand = Plus / Plus Query: 225 catgtctcggtcgccacatcttcctccccgctgcccgcctcagggtcctcaaatcacagg 284 ||||||||||||||| || || ||||||||||||||||| | ||||||||| |||||| | Sbjct: 329 catgtctcggtcgccgcacctccctccccgctgcccgccgctgggtcctcagatcacaag 388 Query: 285 aagagatgacagcttgttcacacagagctgcaggtttccatcagaggatccattctttgg 344 || || |||||||||||||| ||||||||||||||||| || |||||||||||| | || Sbjct: 389 gagggacgacagcttgttcacgcagagctgcaggtttccgtcggaggatccattcgtcgg 448 Query: 345 tgaaccaccgtgttggctagatgatctccttgcggattctgtgaaaaaactgaaccttcc 404 ||| || ||||| ||||| ||||||||||| ||||| || | ||| | | | |||||| Sbjct: 449 tgagccgccgtgctggctcgatgatctcctcgcggactccgggaagagccacacccttcc 508 Query: 405 gcttcttaggagagcttgtagcgactctgatgctatcttggatg 448 | ||| |||||||| || ||||| ||||||||||||||||||| Sbjct: 509 tcctctcaggagagcctgcagcgattctgatgctatcttggatg 552 Score = 129 bits (65), Expect = 3e-26 Identities = 107/121 (88%) Strand = Plus / Plus Query: 562 gaagttagctgtgtatatgggccaaattcaccaagacagaagtgtaggctgaccagttca 621 |||| ||||||||| ||||| |||||||| || ||||||||| |||||||||||||||| Sbjct: 672 gaaggtagctgtgtttatggaccaaattcgccgagacagaagactaggctgaccagttca 731 Query: 622 gagagttccattgtaaatgctgtcctggagaatgttcctagcaactctttgcagtacctg 681 ||||||||||| || || |||||| |||||||||| ||||||||| | |||||||||||| Sbjct: 732 gagagttccatggttaacgctgtcttggagaatgtccctagcaacccattgcagtacctg 791 Query: 682 a 682 | Sbjct: 792 a 792
>dbj|AK063644.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-118-H05, full insert sequence Length = 1606 Score = 331 bits (167), Expect = 4e-87 Identities = 325/377 (86%), Gaps = 3/377 (0%) Strand = Plus / Plus Query: 865 aaaggcgatcaggccaaagatctagggtccggaaacttcaatacattgctgatcttgaaa 924 ||||||| |||||||||||||| |||||| | |||||||||||||||||||||||||| | Sbjct: 895 aaaggcgctcaggccaaagatcaagggtcagaaaacttcaatacattgctgatcttgaga 954 Query: 925 gaactgtggactctcttcagaacatgggagctgatttggctgtaagagtagcatctcatt 984 ||||||| ||||| ||||||||||| || |||||||||||||| || || ||||||| || Sbjct: 955 gaactgttgactcacttcagaacataggggctgatttggctgtgagggtggcatctcttt 1014 Query: 985 tccagcttcgcaatgctctatcgatggaaaacaagcaactgaggagacagattgctagtc 1044 |||||||||| ||||||||||| ||||||||||||||||||||||| ||||| |||||| Sbjct: 1015 tccagcttcgtaatgctctatcaatggaaaacaagcaactgaggaggcagatcactagtc 1074 Query: 1045 ttcagcaggcaaaactaatgaaggatggtcaaacacatttcttgaagaaggaaactgaga 1104 ||||||||||||||||||| |||||||| ||||| || | ||||||||||||| |||| Sbjct: 1075 ttcagcaggcaaaactaattaaggatggccaaacgcagatgctgaagaaggaaaccgaga 1134 Query: 1105 ggttgaagcagatctctgtgcgtcaccgcaggagcaggagtgtcacttcttgttttgaac 1164 || |||||||| |||| ||||| ||||||||||||||||| ||||| ||||| ||||| Sbjct: 1135 ggctgaagcagctctcagtgcgccaccgcaggagcaggagcgtcacctcttgctttgagg 1194 Query: 1165 cgggctcaatt---ggagcagacccatcagcaatcaattggcagacacttgacatgtcaa 1221 | |||| || |||| ||||||||| || ||||| ||||||| || |||||||||| Sbjct: 1195 ccaactcatttggaggaggagacccatctgcgatcaactggcagatgctcgacatgtcaa 1254 Query: 1222 acctgagcttaaacggc 1238 | || ||||| |||||| Sbjct: 1255 agctcagcttgaacggc 1271 Score = 167 bits (84), Expect = 2e-37 Identities = 189/224 (84%) Strand = Plus / Plus Query: 225 catgtctcggtcgccacatcttcctccccgctgcccgcctcagggtcctcaaatcacagg 284 ||||||||||||||| || || ||||||||||||||||| | ||||||||| |||||| | Sbjct: 329 catgtctcggtcgccgcacctccctccccgctgcccgccgctgggtcctcagatcacaag 388 Query: 285 aagagatgacagcttgttcacacagagctgcaggtttccatcagaggatccattctttgg 344 || || |||||||||||||| ||||||||||||||||| || |||||||||||| | || Sbjct: 389 gagggacgacagcttgttcacgcagagctgcaggtttccgtcggaggatccattcgtcgg 448 Query: 345 tgaaccaccgtgttggctagatgatctccttgcggattctgtgaaaaaactgaaccttcc 404 ||| || ||||| ||||| ||||||||||| ||||| || | ||| | | | |||||| Sbjct: 449 tgagccgccgtgctggctcgatgatctcctcgcggactccgggaagagccacacccttcc 508 Query: 405 gcttcttaggagagcttgtagcgactctgatgctatcttggatg 448 | ||| |||||||| || ||||| ||||||||||||||||||| Sbjct: 509 tcctctcaggagagcctgcagcgattctgatgctatcttggatg 552 Score = 129 bits (65), Expect = 3e-26 Identities = 107/121 (88%) Strand = Plus / Plus Query: 562 gaagttagctgtgtatatgggccaaattcaccaagacagaagtgtaggctgaccagttca 621 |||| ||||||||| ||||| |||||||| || ||||||||| |||||||||||||||| Sbjct: 672 gaaggtagctgtgtttatggaccaaattcgccgagacagaagactaggctgaccagttca 731 Query: 622 gagagttccattgtaaatgctgtcctggagaatgttcctagcaactctttgcagtacctg 681 ||||||||||| || || |||||| |||||||||| ||||||||| | |||||||||||| Sbjct: 732 gagagttccatggttaacgctgtcttggagaatgtccctagcaacccattgcagtacctg 791 Query: 682 a 682 | Sbjct: 792 a 792
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 170 bits (86), Expect = 1e-38 Identities = 122/134 (91%) Strand = Plus / Minus Query: 940 ttcagaacatgggagctgatttggctgtaagagtagcatctcatttccagcttcgcaatg 999 |||||||||| || |||||||||||||| || || ||||||| |||||||||||| |||| Sbjct: 19983638 ttcagaacataggggctgatttggctgtgagggtggcatctcttttccagcttcgtaatg 19983579 Query: 1000 ctctatcgatggaaaacaagcaactgaggagacagattgctagtcttcagcaggcaaaac 1059 ||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct: 19983578 ctctatcaatggaaaacaagcaactgaggaggcagatcactagtcttcagcaggcaaaac 19983519 Query: 1060 taatgaaggatggt 1073 |||| ||||||||| Sbjct: 19983518 taattaaggatggt 19983505 Score = 167 bits (84), Expect = 2e-37 Identities = 189/224 (84%) Strand = Plus / Minus Query: 225 catgtctcggtcgccacatcttcctccccgctgcccgcctcagggtcctcaaatcacagg 284 ||||||||||||||| || || ||||||||||||||||| | ||||||||| |||||| | Sbjct: 19986475 catgtctcggtcgccgcacctccctccccgctgcccgccgctgggtcctcagatcacaag 19986416 Query: 285 aagagatgacagcttgttcacacagagctgcaggtttccatcagaggatccattctttgg 344 || || |||||||||||||| ||||||||||||||||| || |||||||||||| | || Sbjct: 19986415 gagggacgacagcttgttcacgcagagctgcaggtttccgtcggaggatccattcgtcgg 19986356 Query: 345 tgaaccaccgtgttggctagatgatctccttgcggattctgtgaaaaaactgaaccttcc 404 ||| || ||||| ||||| ||||||||||| ||||| || | ||| | | | |||||| Sbjct: 19986355 tgagccgccgtgctggctcgatgatctcctcgcggactccgggaagagccacacccttcc 19986296 Query: 405 gcttcttaggagagcttgtagcgactctgatgctatcttggatg 448 | ||| |||||||| || ||||| ||||||||||||||||||| Sbjct: 19986295 tcctctcaggagagcctgcagcgattctgatgctatcttggatg 19986252 Score = 129 bits (65), Expect = 3e-26 Identities = 107/121 (88%) Strand = Plus / Minus Query: 562 gaagttagctgtgtatatgggccaaattcaccaagacagaagtgtaggctgaccagttca 621 |||| ||||||||| ||||| |||||||| || ||||||||| |||||||||||||||| Sbjct: 19986132 gaaggtagctgtgtttatggaccaaattcgccgagacagaagactaggctgaccagttca 19986073 Query: 622 gagagttccattgtaaatgctgtcctggagaatgttcctagcaactctttgcagtacctg 681 ||||||||||| || || |||||| |||||||||| ||||||||| | |||||||||||| Sbjct: 19986072 gagagttccatggttaacgctgtcttggagaatgtccctagcaacccattgcagtacctg 19986013 Query: 682 a 682 | Sbjct: 19986012 a 19986012 Score = 99.6 bits (50), Expect = 3e-17 Identities = 71/78 (91%) Strand = Plus / Minus Query: 867 aggcgatcaggccaaagatctagggtccggaaacttcaatacattgctgatcttgaaaga 926 ||||| |||||||||||||| |||||| | |||||||||||||||||||||||||| ||| Sbjct: 19984055 aggcgctcaggccaaagatcaagggtcagaaaacttcaatacattgctgatcttgagaga 19983996 Query: 927 actgtggactctcttcag 944 ||||| ||||| |||||| Sbjct: 19983995 actgttgactcacttcag 19983978 Score = 89.7 bits (45), Expect = 3e-14 Identities = 128/155 (82%), Gaps = 3/155 (1%) Strand = Plus / Minus Query: 1087 tgaagaaggaaactgagaggttgaagcagatctctgtgcgtcaccgcaggagcaggagtg 1146 ||||||||||||| |||||| |||||||| |||| ||||| ||||||||||||||||| | Sbjct: 19982523 tgaagaaggaaaccgagaggctgaagcagctctcagtgcgccaccgcaggagcaggagcg 19982464 Query: 1147 tcacttcttgttttgaaccgggctcaatt---ggagcagacccatcagcaatcaattggc 1203 |||| ||||| ||||| | |||| || |||| ||||||||| || ||||| |||| Sbjct: 19982463 tcacctcttgctttgaggccaactcatttggaggaggagacccatctgcgatcaactggc 19982404 Query: 1204 agacacttgacatgtcaaacctgagcttaaacggc 1238 ||| || ||||||||||| || ||||| |||||| Sbjct: 19982403 agatgctcgacatgtcaaagctcagcttgaacggc 19982369
>dbj|AP004753.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0508B05 Length = 166165 Score = 170 bits (86), Expect = 1e-38 Identities = 122/134 (91%) Strand = Plus / Minus Query: 940 ttcagaacatgggagctgatttggctgtaagagtagcatctcatttccagcttcgcaatg 999 |||||||||| || |||||||||||||| || || ||||||| |||||||||||| |||| Sbjct: 161239 ttcagaacataggggctgatttggctgtgagggtggcatctcttttccagcttcgtaatg 161180 Query: 1000 ctctatcgatggaaaacaagcaactgaggagacagattgctagtcttcagcaggcaaaac 1059 ||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct: 161179 ctctatcaatggaaaacaagcaactgaggaggcagatcactagtcttcagcaggcaaaac 161120 Query: 1060 taatgaaggatggt 1073 |||| ||||||||| Sbjct: 161119 taattaaggatggt 161106 Score = 167 bits (84), Expect = 2e-37 Identities = 189/224 (84%) Strand = Plus / Minus Query: 225 catgtctcggtcgccacatcttcctccccgctgcccgcctcagggtcctcaaatcacagg 284 ||||||||||||||| || || ||||||||||||||||| | ||||||||| |||||| | Sbjct: 164076 catgtctcggtcgccgcacctccctccccgctgcccgccgctgggtcctcagatcacaag 164017 Query: 285 aagagatgacagcttgttcacacagagctgcaggtttccatcagaggatccattctttgg 344 || || |||||||||||||| ||||||||||||||||| || |||||||||||| | || Sbjct: 164016 gagggacgacagcttgttcacgcagagctgcaggtttccgtcggaggatccattcgtcgg 163957 Query: 345 tgaaccaccgtgttggctagatgatctccttgcggattctgtgaaaaaactgaaccttcc 404 ||| || ||||| ||||| ||||||||||| ||||| || | ||| | | | |||||| Sbjct: 163956 tgagccgccgtgctggctcgatgatctcctcgcggactccgggaagagccacacccttcc 163897 Query: 405 gcttcttaggagagcttgtagcgactctgatgctatcttggatg 448 | ||| |||||||| || ||||| ||||||||||||||||||| Sbjct: 163896 tcctctcaggagagcctgcagcgattctgatgctatcttggatg 163853 Score = 129 bits (65), Expect = 3e-26 Identities = 107/121 (88%) Strand = Plus / Minus Query: 562 gaagttagctgtgtatatgggccaaattcaccaagacagaagtgtaggctgaccagttca 621 |||| ||||||||| ||||| |||||||| || ||||||||| |||||||||||||||| Sbjct: 163733 gaaggtagctgtgtttatggaccaaattcgccgagacagaagactaggctgaccagttca 163674 Query: 622 gagagttccattgtaaatgctgtcctggagaatgttcctagcaactctttgcagtacctg 681 ||||||||||| || || |||||| |||||||||| ||||||||| | |||||||||||| Sbjct: 163673 gagagttccatggttaacgctgtcttggagaatgtccctagcaacccattgcagtacctg 163614 Query: 682 a 682 | Sbjct: 163613 a 163613 Score = 99.6 bits (50), Expect = 3e-17 Identities = 71/78 (91%) Strand = Plus / Minus Query: 867 aggcgatcaggccaaagatctagggtccggaaacttcaatacattgctgatcttgaaaga 926 ||||| |||||||||||||| |||||| | |||||||||||||||||||||||||| ||| Sbjct: 161656 aggcgctcaggccaaagatcaagggtcagaaaacttcaatacattgctgatcttgagaga 161597 Query: 927 actgtggactctcttcag 944 ||||| ||||| |||||| Sbjct: 161596 actgttgactcacttcag 161579 Score = 89.7 bits (45), Expect = 3e-14 Identities = 128/155 (82%), Gaps = 3/155 (1%) Strand = Plus / Minus Query: 1087 tgaagaaggaaactgagaggttgaagcagatctctgtgcgtcaccgcaggagcaggagtg 1146 ||||||||||||| |||||| |||||||| |||| ||||| ||||||||||||||||| | Sbjct: 160124 tgaagaaggaaaccgagaggctgaagcagctctcagtgcgccaccgcaggagcaggagcg 160065 Query: 1147 tcacttcttgttttgaaccgggctcaatt---ggagcagacccatcagcaatcaattggc 1203 |||| ||||| ||||| | |||| || |||| ||||||||| || ||||| |||| Sbjct: 160064 tcacctcttgctttgaggccaactcatttggaggaggagacccatctgcgatcaactggc 160005 Query: 1204 agacacttgacatgtcaaacctgagcttaaacggc 1238 ||| || ||||||||||| || ||||| |||||| Sbjct: 160004 agatgctcgacatgtcaaagctcagcttgaacggc 159970
>dbj|AP005609.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0014M17 Length = 156778 Score = 170 bits (86), Expect = 1e-38 Identities = 122/134 (91%) Strand = Plus / Minus Query: 940 ttcagaacatgggagctgatttggctgtaagagtagcatctcatttccagcttcgcaatg 999 |||||||||| || |||||||||||||| || || ||||||| |||||||||||| |||| Sbjct: 87759 ttcagaacataggggctgatttggctgtgagggtggcatctcttttccagcttcgtaatg 87700 Query: 1000 ctctatcgatggaaaacaagcaactgaggagacagattgctagtcttcagcaggcaaaac 1059 ||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct: 87699 ctctatcaatggaaaacaagcaactgaggaggcagatcactagtcttcagcaggcaaaac 87640 Query: 1060 taatgaaggatggt 1073 |||| ||||||||| Sbjct: 87639 taattaaggatggt 87626 Score = 167 bits (84), Expect = 2e-37 Identities = 189/224 (84%) Strand = Plus / Minus Query: 225 catgtctcggtcgccacatcttcctccccgctgcccgcctcagggtcctcaaatcacagg 284 ||||||||||||||| || || ||||||||||||||||| | ||||||||| |||||| | Sbjct: 90596 catgtctcggtcgccgcacctccctccccgctgcccgccgctgggtcctcagatcacaag 90537 Query: 285 aagagatgacagcttgttcacacagagctgcaggtttccatcagaggatccattctttgg 344 || || |||||||||||||| ||||||||||||||||| || |||||||||||| | || Sbjct: 90536 gagggacgacagcttgttcacgcagagctgcaggtttccgtcggaggatccattcgtcgg 90477 Query: 345 tgaaccaccgtgttggctagatgatctccttgcggattctgtgaaaaaactgaaccttcc 404 ||| || ||||| ||||| ||||||||||| ||||| || | ||| | | | |||||| Sbjct: 90476 tgagccgccgtgctggctcgatgatctcctcgcggactccgggaagagccacacccttcc 90417 Query: 405 gcttcttaggagagcttgtagcgactctgatgctatcttggatg 448 | ||| |||||||| || ||||| ||||||||||||||||||| Sbjct: 90416 tcctctcaggagagcctgcagcgattctgatgctatcttggatg 90373 Score = 129 bits (65), Expect = 3e-26 Identities = 107/121 (88%) Strand = Plus / Minus Query: 562 gaagttagctgtgtatatgggccaaattcaccaagacagaagtgtaggctgaccagttca 621 |||| ||||||||| ||||| |||||||| || ||||||||| |||||||||||||||| Sbjct: 90253 gaaggtagctgtgtttatggaccaaattcgccgagacagaagactaggctgaccagttca 90194 Query: 622 gagagttccattgtaaatgctgtcctggagaatgttcctagcaactctttgcagtacctg 681 ||||||||||| || || |||||| |||||||||| ||||||||| | |||||||||||| Sbjct: 90193 gagagttccatggttaacgctgtcttggagaatgtccctagcaacccattgcagtacctg 90134 Query: 682 a 682 | Sbjct: 90133 a 90133 Score = 99.6 bits (50), Expect = 3e-17 Identities = 71/78 (91%) Strand = Plus / Minus Query: 867 aggcgatcaggccaaagatctagggtccggaaacttcaatacattgctgatcttgaaaga 926 ||||| |||||||||||||| |||||| | |||||||||||||||||||||||||| ||| Sbjct: 88176 aggcgctcaggccaaagatcaagggtcagaaaacttcaatacattgctgatcttgagaga 88117 Query: 927 actgtggactctcttcag 944 ||||| ||||| |||||| Sbjct: 88116 actgttgactcacttcag 88099 Score = 89.7 bits (45), Expect = 3e-14 Identities = 128/155 (82%), Gaps = 3/155 (1%) Strand = Plus / Minus Query: 1087 tgaagaaggaaactgagaggttgaagcagatctctgtgcgtcaccgcaggagcaggagtg 1146 ||||||||||||| |||||| |||||||| |||| ||||| ||||||||||||||||| | Sbjct: 86644 tgaagaaggaaaccgagaggctgaagcagctctcagtgcgccaccgcaggagcaggagcg 86585 Query: 1147 tcacttcttgttttgaaccgggctcaatt---ggagcagacccatcagcaatcaattggc 1203 |||| ||||| ||||| | |||| || |||| ||||||||| || ||||| |||| Sbjct: 86584 tcacctcttgctttgaggccaactcatttggaggaggagacccatctgcgatcaactggc 86525 Query: 1204 agacacttgacatgtcaaacctgagcttaaacggc 1238 ||| || ||||||||||| || ||||| |||||| Sbjct: 86524 agatgctcgacatgtcaaagctcagcttgaacggc 86490
>emb|AL354825.10| Human DNA sequence from clone RP11-303J13 on chromosome 13 Contains a CpG island, complete sequence Length = 82194 Score = 48.1 bits (24), Expect = 0.096 Identities = 24/24 (100%) Strand = Plus / Plus Query: 937 ctcttcagaacatgggagctgatt 960 |||||||||||||||||||||||| Sbjct: 56585 ctcttcagaacatgggagctgatt 56608
>gb|AC102839.24| Mus musculus chromosome 5, clone RP24-343D8, complete sequence Length = 196090 Score = 46.1 bits (23), Expect = 0.38 Identities = 26/27 (96%) Strand = Plus / Minus Query: 917 tcttgaaagaactgtggactctcttca 943 |||| |||||||||||||||||||||| Sbjct: 83511 tcttaaaagaactgtggactctcttca 83485
>gb|AC150284.1| Latimeria menadoensis clone VMRC4-44H8, complete sequence Length = 187607 Score = 44.1 bits (22), Expect = 1.5 Identities = 22/22 (100%) Strand = Plus / Plus Query: 769 aaaccatttaaaagttcttaca 790 |||||||||||||||||||||| Sbjct: 106223 aaaccatttaaaagttcttaca 106244
>gb|AC150283.1| Latimeria menadoensis clone VMRC4-188C23, complete sequence Length = 171414 Score = 44.1 bits (22), Expect = 1.5 Identities = 22/22 (100%) Strand = Plus / Plus Query: 769 aaaccatttaaaagttcttaca 790 |||||||||||||||||||||| Sbjct: 123719 aaaccatttaaaagttcttaca 123740
>gb|AY386697.1| Oryctolagus cuniculus clone 225P18, complete sequence Length = 139446 Score = 44.1 bits (22), Expect = 1.5 Identities = 28/30 (93%) Strand = Plus / Plus Query: 1099 ctgagaggttgaagcagatctctgtgcgtc 1128 |||||||| ||||||||| ||||||||||| Sbjct: 131493 ctgagaggctgaagcagaactctgtgcgtc 131522
>gb|AY386695.1| Oryctolagus cuniculus clone 219D23, complete sequence Length = 137302 Score = 44.1 bits (22), Expect = 1.5 Identities = 28/30 (93%) Strand = Plus / Plus Query: 1099 ctgagaggttgaagcagatctctgtgcgtc 1128 |||||||| ||||||||| ||||||||||| Sbjct: 38384 ctgagaggctgaagcagaactctgtgcgtc 38413
>gb|M60598.1|WHTDHDPD17 T.aestivum dihydrodipicolinate synthase (DHDPS) mRNA, complete cds, clone pDA17 Length = 1458 Score = 44.1 bits (22), Expect = 1.5 Identities = 34/38 (89%) Strand = Plus / Plus Query: 58 cctctcgcgcgcttcgccgccgcagtcgttcccgttct 95 |||||||||||| ||||||||| | |||||||||||| Sbjct: 141 cctctcgcgcgcgtcgccgccgtcgccgttcccgttct 178
>ref|XM_001120853.1| PREDICTED: Apis mellifera similar to CG5002-PA (LOC724952), mRNA Length = 1740 Score = 42.1 bits (21), Expect = 5.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1175 tggagcagacccatcagcaat 1195 ||||||||||||||||||||| Sbjct: 410 tggagcagacccatcagcaat 390
>emb|CT573074.1| Kuenenia stuttgartiensis genome fragment KUST_B (2 of 5) Length = 132284 Score = 42.1 bits (21), Expect = 5.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 829 tgcagcgagaatgctggaaag 849 ||||||||||||||||||||| Sbjct: 59165 tgcagcgagaatgctggaaag 59185
>gb|AC116500.13| Mus musculus chromosome 5, clone RP24-297N9, complete sequence Length = 177689 Score = 42.1 bits (21), Expect = 5.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1087 tgaagaaggaaactgagaggt 1107 ||||||||||||||||||||| Sbjct: 66038 tgaagaaggaaactgagaggt 66058
>gb|AC147058.3| Pan troglodytes BAC clone RP43-154B16 from 7, complete sequence Length = 161951 Score = 42.1 bits (21), Expect = 5.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 438 tatcttggatgcaatgaggac 458 ||||||||||||||||||||| Sbjct: 53047 tatcttggatgcaatgaggac 53027
>gb|AC145895.2| Pan troglodytes BAC clone RP43-8H7 from 7, complete sequence Length = 170186 Score = 42.1 bits (21), Expect = 5.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 438 tatcttggatgcaatgaggac 458 ||||||||||||||||||||| Sbjct: 56932 tatcttggatgcaatgaggac 56952
>gb|AC004843.1| Homo sapiens PAC clone RP4-612F12 from 7, complete sequence Length = 136655 Score = 42.1 bits (21), Expect = 5.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 438 tatcttggatgcaatgaggac 458 ||||||||||||||||||||| Sbjct: 39951 tatcttggatgcaatgaggac 39971
>gb|AC144562.5| Homo sapiens 3 BAC RP11-124L3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 97986 Score = 42.1 bits (21), Expect = 5.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 571 tgtgtatatgggccaaattcaccaa 595 ||||||||||| ||||||||||||| Sbjct: 60638 tgtgtatatggtccaaattcaccaa 60614
>gb|AC122178.2| Homo sapiens chromosome 3 clone RP11-340I14, complete sequence Length = 201917 Score = 42.1 bits (21), Expect = 5.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 919 ttgaaagaactgtggactctc 939 ||||||||||||||||||||| Sbjct: 201601 ttgaaagaactgtggactctc 201621
>ref|NM_066355.3| Caenorhabditis elegans K12H4.3 (K12H4.3) mRNA, complete cds Length = 1177 Score = 42.1 bits (21), Expect = 5.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1012 aaaacaagcaactgaggagac 1032 ||||||||||||||||||||| Sbjct: 146 aaaacaagcaactgaggagac 166
>emb|AL831767.8| Human DNA sequence from clone RP11-502M23 on chromosome 1 Contains part of the OSBPL9 gene for oxysterol binding protein-like 9, complete sequence Length = 46678 Score = 42.1 bits (21), Expect = 5.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 777 taaaagttcttacaggataca 797 ||||||||||||||||||||| Sbjct: 7468 taaaagttcttacaggataca 7448
>gb|AC008583.6| Homo sapiens chromosome 3 clone CTC-501D11, complete sequence Length = 122493 Score = 42.1 bits (21), Expect = 5.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 919 ttgaaagaactgtggactctc 939 ||||||||||||||||||||| Sbjct: 35632 ttgaaagaactgtggactctc 35652
>gb|L14331.1| Caenorhabditis elegans cosmid K12H4, complete sequence Length = 38582 Score = 42.1 bits (21), Expect = 5.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1012 aaaacaagcaactgaggagac 1032 ||||||||||||||||||||| Sbjct: 4316 aaaacaagcaactgaggagac 4336
>emb|Z97338.2|ATFCA3 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 3 Length = 200252 Score = 42.1 bits (21), Expect = 5.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 385 gtgaaaaaactgaaccttccgcttc 409 |||||| |||||||||||||||||| Sbjct: 195360 gtgaaataactgaaccttccgcttc 195384
>emb|AL161541.2|ATCHRIV41 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 41 Length = 197419 Score = 42.1 bits (21), Expect = 5.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 385 gtgaaaaaactgaaccttccgcttc 409 |||||| |||||||||||||||||| Sbjct: 148837 gtgaaataactgaaccttccgcttc 148861 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 281,340,207 Number of extensions: 14889866 Number of successful extensions: 287389 Number of sequences better than 10.0: 26 Number of HSP's gapped: 287387 Number of HSP's successfully gapped: 52 Length of query: 1561 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1538 Effective length of database: 18,503,978,556 Effective search space: 28459119019128 Effective search space used: 28459119019128 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
