ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf93o17 |
|---|---|
| Clone Library Name | barley_pub |
>P62317:SMD2_MOUSE Small nuclear ribonucleoprotein Sm D2 - Mus musculus (Mouse)| Length = 118 Score = 182 bits (463), Expect = 7e-46 Identities = 86/105 (81%), Positives = 98/105 (93%) Frame = +1 Query: 139 AEVAPVDQGKKEEEEFSTGPLSILMLSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLE 318 +E+ P + K+EEEEF+TGPLS+L SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLE Sbjct: 9 SEMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLE 68 Query: 319 NVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 453 NV+EMWTEVPK+GKGKKK+ PVNKDR+ISKMFLRGDSVI+VLRNP Sbjct: 69 NVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>P62316:SMD2_HUMAN Small nuclear ribonucleoprotein Sm D2 - Homo sapiens (Human)| Length = 118 Score = 182 bits (463), Expect = 7e-46 Identities = 86/105 (81%), Positives = 98/105 (93%) Frame = +1 Query: 139 AEVAPVDQGKKEEEEFSTGPLSILMLSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLE 318 +E+ P + K+EEEEF+TGPLS+L SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLE Sbjct: 9 SEMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLE 68 Query: 319 NVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 453 NV+EMWTEVPK+GKGKKK+ PVNKDR+ISKMFLRGDSVI+VLRNP Sbjct: 69 NVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>Q3SZF8:SMD2_BOVIN Small nuclear ribonucleoprotein Sm D2 - Bos taurus (Bovine)| Length = 118 Score = 182 bits (463), Expect = 7e-46 Identities = 86/105 (81%), Positives = 98/105 (93%) Frame = +1 Query: 139 AEVAPVDQGKKEEEEFSTGPLSILMLSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLE 318 +E+ P + K+EEEEF+TGPLS+L SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLE Sbjct: 9 SEMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLE 68 Query: 319 NVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 453 NV+EMWTEVPK+GKGKKK+ PVNKDR+ISKMFLRGDSVI+VLRNP Sbjct: 69 NVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>Q9VI10:SMD2_DROME Probable small nuclear ribonucleoprotein Sm D2 - Drosophila| melanogaster (Fruit fly) Length = 119 Score = 182 bits (461), Expect = 1e-45 Identities = 86/109 (78%), Positives = 98/109 (89%) Frame = +1 Query: 127 VASMAEVAPVDQGKKEEEEFSTGPLSILMLSVKNNTQVLINCRNNKKLLGRVRAFDRHCN 306 V +E+ P + ++EEEEF+TGPLS+L SVKNNTQVLINCRNNKKLLGRV+AFDRHCN Sbjct: 4 VKPKSELTPEELARQEEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCN 63 Query: 307 MVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 453 MVLENV+EMWTE+P+TGKGKKK PVNKDRFISKMFLRGDSVI+VLRNP Sbjct: 64 MVLENVKEMWTELPRTGKGKKKVKPVNKDRFISKMFLRGDSVILVLRNP 112
>Q18786:SMD2_CAEEL Probable small nuclear ribonucleoprotein Sm D2 - Caenorhabditis| elegans Length = 118 Score = 168 bits (426), Expect = 1e-41 Identities = 82/105 (78%), Positives = 92/105 (87%) Frame = +1 Query: 139 AEVAPVDQGKKEEEEFSTGPLSILMLSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLE 318 +E+ + KE+EEF+ GPLSIL SVKNN QVLINCRNNKKLLGRV+AFDRHCNMVLE Sbjct: 9 SEMTAEELAAKEDEEFNVGPLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCNMVLE 68 Query: 319 NVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 453 NV+EMWTEVPKTGKGKKKA V KDRFISKMFLRGDSVI+V++NP Sbjct: 69 NVKEMWTEVPKTGKGKKKAKSVAKDRFISKMFLRGDSVILVVKNP 113
>O14036:SMD2_SCHPO Probable small nuclear ribonucleoprotein Sm D2 -| Schizosaccharomyces pombe (Fission yeast) Length = 115 Score = 140 bits (352), Expect = 5e-33 Identities = 68/105 (64%), Positives = 84/105 (80%) Frame = +1 Query: 139 AEVAPVDQGKKEEEEFSTGPLSILMLSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLE 318 +E++ ++ + EE EFS GPLS+L +VKN+ QVLINCRNNKKLL RV+AFDRH NMVLE Sbjct: 10 SELSEIELARLEEYEFSAGPLSVLQQAVKNHDQVLINCRNNKKLLARVKAFDRHSNMVLE 69 Query: 319 NVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 453 NV+EMWTE +T G KK +NKDRFISKMFLRGD V++V+R P Sbjct: 70 NVKEMWTEKKRTASG-KKGKAINKDRFISKMFLRGDGVVLVVRIP 113
>Q06217:SMD2_YEAST Small nuclear ribonucleoprotein Sm D2 - Saccharomyces cerevisiae| (Baker's yeast) Length = 110 Score = 108 bits (269), Expect = 2e-23 Identities = 53/104 (50%), Positives = 75/104 (72%) Frame = +1 Query: 142 EVAPVDQGKKEEEEFSTGPLSILMLSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN 321 E++ + + EE EF GP+S++ ++ T V+I+ RNN K++ RV+AFDRHCNMVLEN Sbjct: 12 ELSRAELEELEEFEFKHGPMSLINDAMVTRTPVIISLRNNHKIIARVKAFDRHCNMVLEN 71 Query: 322 VREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 453 V+E+WTE KK +N++RFISK+FLRGDSVI+VL+ P Sbjct: 72 VKELWTE-------KKGKNVINRERFISKLFLRGDSVIVVLKTP 108
>Q29329:SMD2_PIG Small nuclear ribonucleoprotein Sm D2 - Sus scrofa (Pig)| Length = 50 Score = 54.3 bits (129), Expect = 4e-07 Identities = 25/42 (59%), Positives = 31/42 (73%) Frame = +1 Query: 139 AEVAPVDQGKKEEEEFSTGPLSILMLSVKNNTQVLINCRNNK 264 +E+ P + K+EEEEF+TGPLS+ S K TQVLINCRN K Sbjct: 9 SEMTPEELQKREEEEFNTGPLSVXTQSXKTXTQVLINCRNTK 50
>P62311:LSM3_MOUSE U6 snRNA-associated Sm-like protein LSm3 - Mus musculus (Mouse)| Length = 102 Score = 49.7 bits (117), Expect = 9e-06 Identities = 27/82 (32%), Positives = 50/82 (60%) Frame = +1 Query: 196 PLSILMLSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 375 PL ++ LS+ + ++ + RN+++L GR+ A+D+H NM+L +V E T + + ++ Sbjct: 17 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 74 Query: 376 LPVNKDRFISKMFLRGDSVIIV 441 K R I +F+RGD V++V Sbjct: 75 YKSTK-RNIPMLFVRGDGVVLV 95
>P62310:LSM3_HUMAN U6 snRNA-associated Sm-like protein LSm3 - Homo sapiens (Human)| Length = 102 Score = 49.7 bits (117), Expect = 9e-06 Identities = 27/82 (32%), Positives = 50/82 (60%) Frame = +1 Query: 196 PLSILMLSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 375 PL ++ LS+ + ++ + RN+++L GR+ A+D+H NM+L +V E T + + ++ Sbjct: 17 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 74 Query: 376 LPVNKDRFISKMFLRGDSVIIV 441 K R I +F+RGD V++V Sbjct: 75 YKSTK-RNIPMLFVRGDGVVLV 95
>Q32PE9:LSM3_BOVIN U6 snRNA-associated Sm-like protein LSm3 - Bos taurus (Bovine)| Length = 102 Score = 49.7 bits (117), Expect = 9e-06 Identities = 27/82 (32%), Positives = 50/82 (60%) Frame = +1 Query: 196 PLSILMLSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 375 PL ++ LS+ + ++ + RN+++L GR+ A+D+H NM+L +V E T + + ++ Sbjct: 17 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 74 Query: 376 LPVNKDRFISKMFLRGDSVIIV 441 K R I +F+RGD V++V Sbjct: 75 YKSTK-RNIPMLFVRGDGVVLV 95
>Q9Y7M4:LSM3_SCHPO Probable U6 snRNA-associated Sm-like protein LSm3 -| Schizosaccharomyces pombe (Fission yeast) Length = 93 Score = 48.9 bits (115), Expect = 2e-05 Identities = 29/82 (35%), Positives = 47/82 (57%) Frame = +1 Query: 196 PLSILMLSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 375 PL ++ LS+ + V + R +++L GR+ A+D H NMVL + E+ T K KA Sbjct: 10 PLDLVRLSL--DEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKA 67 Query: 376 LPVNKDRFISKMFLRGDSVIIV 441 L + + +F+RGDSVI++ Sbjct: 68 LKTIRKHY-EMLFVRGDSVILI 88
>P57743:LSM3_YEAST U6 snRNA-associated Sm-like protein LSm3 - Saccharomyces cerevisiae| (Baker's yeast) Length = 89 Score = 40.0 bits (92), Expect = 0.007 Identities = 24/82 (29%), Positives = 44/82 (53%) Frame = +1 Query: 196 PLSILMLSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 375 PL +L L++ + +V I R + L+G ++AFD HCN+VL + E ++ + Sbjct: 4 PLDLLKLNL--DERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSE--- 58 Query: 376 LPVNKDRFISKMFLRGDSVIIV 441 +R +F+RGD+V ++ Sbjct: 59 ----SERRCEMVFIRGDTVTLI 76
>P15714:LP61_EIMTE Antigen LPMC-61 - Eimeria tenella| Length = 255 Score = 37.0 bits (84), Expect = 0.059 Identities = 23/78 (29%), Positives = 36/78 (46%) Frame = +3 Query: 198 PLHPHAQRQEQHPGAYQLPEQQEVAWSREGV*PSLQHGSRERQGDVD*GSKDW*RQEEGP 377 P P Q+Q+Q P EQQ+ WS + Q ++Q + W +Q++ P Sbjct: 154 PEQPEQQQQQQWP------EQQQQQWSDQNQQQQAQQWQAQQQ-------QQWPQQQQQP 200 Query: 378 PGEQGQVHKQDVPPRGFG 431 +Q Q +QD+ P G G Sbjct: 201 QQQQQQQQQQDLGPDGVG 218
>Q97BU5:RUXX_THEVO Putative snRNP Sm-like protein - Thermoplasma volcanium| Length = 83 Score = 34.7 bits (78), Expect = 0.30 Identities = 23/85 (27%), Positives = 44/85 (51%) Frame = +1 Query: 187 STGPLSILMLSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGK 366 +T P+ +L ++ N VLI+ + N++ G + +D + N+VL+N E+ G+ Sbjct: 7 NTKPMDVLKNALSRN--VLIDVKGNREYSGILEGYDVYMNVVLQNASEII-------NGE 57 Query: 367 KKALPVNKDRFISKMFLRGDSVIIV 441 K + ++ +RGD+VI V Sbjct: 58 NKGV-------FDRILVRGDNVIFV 75
>Q8PZZ9:RUXX_METMA Putative snRNP Sm-like protein - Methanosarcina mazei| (Methanosarcina frisia) Length = 72 Score = 33.9 bits (76), Expect = 0.50 Identities = 22/82 (26%), Positives = 42/82 (51%) Frame = +1 Query: 196 PLSILMLSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 375 PL IL ++ +T V++ + ++ G ++ +D H N+VL+N E+ + G+ K Sbjct: 5 PLDILNNAL--DTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEEL-----REGEVVSK- 56 Query: 376 LPVNKDRFISKMFLRGDSVIIV 441 S + +RGD+V+ V Sbjct: 57 --------FSSVVIRGDNVVYV 70
>Q8TL47:RUXX_METAC Putative snRNP Sm-like protein - Methanosarcina acetivorans| Length = 72 Score = 33.9 bits (76), Expect = 0.50 Identities = 22/82 (26%), Positives = 42/82 (51%) Frame = +1 Query: 196 PLSILMLSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 375 PL IL ++ +T V++ + ++ G ++ +D H N+VL+N E+ + G+ K Sbjct: 5 PLDILNNAL--DTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEEL-----RDGEVVSK- 56 Query: 376 LPVNKDRFISKMFLRGDSVIIV 441 S + +RGD+V+ V Sbjct: 57 --------FSSVVIRGDNVVYV 70
>P57670:RUXX_THEAC Putative snRNP Sm-like protein - Thermoplasma acidophilum| Length = 83 Score = 33.1 bits (74), Expect = 0.86 Identities = 22/82 (26%), Positives = 42/82 (51%) Frame = +1 Query: 196 PLSILMLSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 375 P+ +L ++ N VLI+ + N++ G + +D + N+VL+N E+ G+ K Sbjct: 10 PMDVLKSALSRN--VLIDVKGNREYSGILEGYDVYMNIVLQNASEII-------NGENKG 60 Query: 376 LPVNKDRFISKMFLRGDSVIIV 441 + ++ +RGD+VI V Sbjct: 61 V-------YDRVLVRGDNVIFV 75
>Q05856:RSMB_DROME Small nuclear ribonucleoprotein-associated protein B - Drosophila| melanogaster (Fruit fly) Length = 199 Score = 33.1 bits (74), Expect = 0.86 Identities = 17/70 (24%), Positives = 39/70 (55%), Gaps = 1/70 (1%) Frame = +1 Query: 229 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKD-RFIS 405 N +V I ++++ +G +AFD+H N++L + E + + K +P ++ R + Sbjct: 14 NYRVRIVLQDSRTFIGTFKAFDKHMNLILGDCEEF-----RKIRSKNSKVPEREEKRVLG 68 Query: 406 KMFLRGDSVI 435 + LRG++++ Sbjct: 69 FVLLRGENIV 78
>P17136:RSMB_RAT Small nuclear ribonucleoprotein-associated protein B - Rattus| norvegicus (Rat) Length = 214 Score = 32.7 bits (73), Expect = 1.1 Identities = 16/61 (26%), Positives = 33/61 (54%) Frame = +1 Query: 253 RNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSV 432 +N + +G +AFD+H N++L + E PK K ++ + R + + LRG+++ Sbjct: 5 QNGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAER----EEKRVLGLVLLRGENL 60 Query: 433 I 435 + Sbjct: 61 V 61
>P24715:RUXG_MEDSA Probable small nuclear ribonucleoprotein G - Medicago sativa| (Alfalfa) Length = 81 Score = 32.3 bits (72), Expect = 1.5 Identities = 19/69 (27%), Positives = 35/69 (50%) Frame = +1 Query: 235 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMF 414 Q+ IN + N+ ++G +R FD+ N+V++N E + N+ I + Sbjct: 17 QLQINLKANRMIVGTLRGFDQFMNLVVDNTVE---------------VNGNEKNDIGMVV 61 Query: 415 LRGDSVIIV 441 +RG+SV+ V Sbjct: 62 IRGNSVVTV 70
>P06680:PRPH_MESAU Acidic proline-rich protein HP43A precursor - Mesocricetus auratus| (Golden hamster) Length = 183 Score = 32.0 bits (71), Expect = 1.9 Identities = 23/82 (28%), Positives = 35/82 (42%) Frame = +3 Query: 210 HAQRQEQHPGAYQLPEQQEVAWSREGV*PSLQHGSRERQGDVD*GSKDW*RQEEGPPGEQ 389 H + + PG Q P QQE P Q G +++G +EGPP ++ Sbjct: 77 HQKPRPPKPGNQQGPPQQEGQQQNRPPKPGNQEGPPQQEGQQQ-NRPPKPGNQEGPPQQE 135 Query: 390 GQVHKQDVPPRGFGHHRPQEPE 455 GQ +Q+ PP+ P + E Sbjct: 136 GQ--QQNRPPKPGNQEGPPQQE 155
>P91918:RSMB_CAEEL Probable small nuclear ribonucleoprotein-associated protein B -| Caenorhabditis elegans Length = 160 Score = 32.0 bits (71), Expect = 1.9 Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 3/72 (4%) Frame = +1 Query: 229 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGK---GKKKALPVNKDRF 399 N ++ I ++ + +G +AFD+H N++L E PK GK G++K R Sbjct: 14 NYRMKIILQDGRTFIGFFKAFDKHMNILLAECEEHRQIKPKAGKKTDGEEK-------RI 66 Query: 400 ISKMFLRGDSVI 435 + + +RG+ ++ Sbjct: 67 LGLVLVRGEHIV 78
>Q9VLV5:RUXE_DROME Probable small nuclear ribonucleoprotein E - Drosophila| melanogaster (Fruit fly) Length = 94 Score = 31.2 bits (69), Expect = 3.3 Identities = 17/96 (17%), Positives = 47/96 (48%), Gaps = 2/96 (2%) Frame = +1 Query: 160 QGKKEEEEFSTGPLSILMLSVKNNTQVLINCRNNKKLL--GRVRAFDRHCNMVLENVREM 333 +G + ++ P++++ ++N ++V + N L G + FD + N+VL++ E+ Sbjct: 4 KGNPKVQKVMVQPINLIFRYLQNRSRVQVWLYENISLRIEGHIVGFDEYMNLVLDDAEEV 63 Query: 334 WTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 441 + + + R + ++ L+GD++ ++ Sbjct: 64 YVK-------------TRQRRNLGRIMLKGDNITLI 86
>Q9TU66:RSMB_MONDO Small nuclear ribonucleoprotein-associated protein B' - Monodelphis| domestica (Short-tailed gray opossum) Length = 240 Score = 31.2 bits (69), Expect = 3.3 Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 6/70 (8%) Frame = +1 Query: 244 INCR------NNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFIS 405 I+CR + + +G +AFD+H N++L + E PK K ++ + R + Sbjct: 13 IDCRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAER----EEKRVLG 68 Query: 406 KMFLRGDSVI 435 + LRG++++ Sbjct: 69 LVLLRGENLV 78
>Q9PV94:RSMB_CHICK Small nuclear ribonucleoprotein-associated protein B' - Gallus| gallus (Chicken) Length = 240 Score = 31.2 bits (69), Expect = 3.3 Identities = 15/61 (24%), Positives = 33/61 (54%) Frame = +1 Query: 253 RNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSV 432 ++ + +G +AFD+H N++L + E PK K ++ + R + + LRG+++ Sbjct: 22 QDGRVFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQPER----EEKRVLGLVLLRGENL 77 Query: 433 I 435 + Sbjct: 78 V 78
>O26745:RUXX_METTH Putative snRNP Sm-like protein - Methanobacterium| thermoautotrophicum Length = 81 Score = 30.8 bits (68), Expect = 4.3 Identities = 15/71 (21%), Positives = 38/71 (53%) Frame = +1 Query: 229 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISK 408 N+ V+I + +++ G +++FD H N+VL + E+ + G+ ++ + Sbjct: 23 NSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEEL-----EDGEVTRR---------LGT 68 Query: 409 MFLRGDSVIIV 441 + +RGD+++ + Sbjct: 69 VLIRGDNIVYI 79
>P63164:RSMN_RAT Small nuclear ribonucleoprotein-associated protein N - Rattus| norvegicus (Rat) Length = 240 Score = 30.8 bits (68), Expect = 4.3 Identities = 15/61 (24%), Positives = 33/61 (54%) Frame = +1 Query: 253 RNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSV 432 ++ + +G +AFD+H N++L + E PK K ++ + R + + LRG+++ Sbjct: 22 QDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPER----EEKRVLGLVLLRGENL 77 Query: 433 I 435 + Sbjct: 78 V 78
>Q5R6I0:RSMN_PONPY Small nuclear ribonucleoprotein-associated protein N - Pongo| pygmaeus (Orangutan) Length = 240 Score = 30.8 bits (68), Expect = 4.3 Identities = 15/61 (24%), Positives = 33/61 (54%) Frame = +1 Query: 253 RNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSV 432 ++ + +G +AFD+H N++L + E PK K ++ + R + + LRG+++ Sbjct: 22 QDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPER----EEKRVLGLVLLRGENL 77 Query: 433 I 435 + Sbjct: 78 V 78
>P63163:RSMN_MOUSE Small nuclear ribonucleoprotein-associated protein N - Mus musculus| (Mouse) Length = 240 Score = 30.8 bits (68), Expect = 4.3 Identities = 15/61 (24%), Positives = 33/61 (54%) Frame = +1 Query: 253 RNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSV 432 ++ + +G +AFD+H N++L + E PK K ++ + R + + LRG+++ Sbjct: 22 QDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPER----EEKRVLGLVLLRGENL 77 Query: 433 I 435 + Sbjct: 78 V 78
>Q60HD3:RSMN_MACFA Small nuclear ribonucleoprotein-associated protein N - Macaca| fascicularis (Crab eating macaque) (Cynomolgus monkey) Length = 240 Score = 30.8 bits (68), Expect = 4.3 Identities = 15/61 (24%), Positives = 33/61 (54%) Frame = +1 Query: 253 RNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSV 432 ++ + +G +AFD+H N++L + E PK K ++ + R + + LRG+++ Sbjct: 22 QDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPER----EEKRVLGLVLLRGENL 77 Query: 433 I 435 + Sbjct: 78 V 78
>P63162:RSMN_HUMAN Small nuclear ribonucleoprotein-associated protein N - Homo sapiens| (Human) Length = 240 Score = 30.8 bits (68), Expect = 4.3 Identities = 15/61 (24%), Positives = 33/61 (54%) Frame = +1 Query: 253 RNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSV 432 ++ + +G +AFD+H N++L + E PK K ++ + R + + LRG+++ Sbjct: 22 QDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPER----EEKRVLGLVLLRGENL 77 Query: 433 I 435 + Sbjct: 78 V 78
>Q17QN3:RSMN_BOVIN Small nuclear ribonucleoprotein-associated protein N - Bos taurus| (Bovine) Length = 240 Score = 30.8 bits (68), Expect = 4.3 Identities = 15/61 (24%), Positives = 33/61 (54%) Frame = +1 Query: 253 RNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSV 432 ++ + +G +AFD+H N++L + E PK K ++ + R + + LRG+++ Sbjct: 22 QDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPER----EEKRVLGLVLLRGENL 77 Query: 433 I 435 + Sbjct: 78 V 78
>P40018:RSMB_YEAST Small nuclear ribonucleoprotein-associated protein B -| Saccharomyces cerevisiae (Baker's yeast) Length = 196 Score = 30.8 bits (68), Expect = 4.3 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 10/71 (14%) Frame = +1 Query: 253 RNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKD----------RFI 402 ++ + +G++ AFD+H N+VL E VPKT K + +KD R + Sbjct: 25 QDGRVYIGQLMAFDKHMNLVLNECIE--ERVPKTQLDKLRPRKDSKDGTTLNIKVEKRVL 82 Query: 403 SKMFLRGDSVI 435 LRG+ ++ Sbjct: 83 GLTILRGEQIL 93
>P27048:RSMB_MOUSE Small nuclear ribonucleoprotein-associated protein B - Mus musculus| (Mouse) Length = 231 Score = 30.8 bits (68), Expect = 4.3 Identities = 15/61 (24%), Positives = 33/61 (54%) Frame = +1 Query: 253 RNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSV 432 ++ + +G +AFD+H N++L + E PK K ++ + R + + LRG+++ Sbjct: 22 QDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAER----EEKRVLGLVLLRGENL 77 Query: 433 I 435 + Sbjct: 78 V 78
>Q9N1Q0:RSMB_MACEU Small nuclear ribonucleoprotein-associated protein B' - Macropus| eugenii (Tammar wallaby) Length = 240 Score = 30.8 bits (68), Expect = 4.3 Identities = 15/61 (24%), Positives = 33/61 (54%) Frame = +1 Query: 253 RNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSV 432 ++ + +G +AFD+H N++L + E PK K ++ + R + + LRG+++ Sbjct: 22 QDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAER----EEKRVLGLVLLRGENL 77 Query: 433 I 435 + Sbjct: 78 V 78
>P14678:RSMB_HUMAN Small nuclear ribonucleoprotein-associated proteins B and B' - Homo| sapiens (Human) Length = 240 Score = 30.8 bits (68), Expect = 4.3 Identities = 15/61 (24%), Positives = 33/61 (54%) Frame = +1 Query: 253 RNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSV 432 ++ + +G +AFD+H N++L + E PK K ++ + R + + LRG+++ Sbjct: 22 QDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAER----EEKRVLGLVLLRGENL 77 Query: 433 I 435 + Sbjct: 78 V 78
>Q9TU67:RSMB_ERIEU Small nuclear ribonucleoprotein-associated protein B' - Erinaceus| europaeus (Western European hedgehog) Length = 240 Score = 30.8 bits (68), Expect = 4.3 Identities = 15/61 (24%), Positives = 33/61 (54%) Frame = +1 Query: 253 RNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSV 432 ++ + +G +AFD+H N++L + E PK K ++ + R + + LRG+++ Sbjct: 22 QDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAER----EEKRVLGLVLLRGENL 77 Query: 433 I 435 + Sbjct: 78 V 78
>Q58DW4:RSMB_BOVIN Small nuclear ribonucleoprotein-associated protein B' - Bos taurus| (Bovine) Length = 240 Score = 30.8 bits (68), Expect = 4.3 Identities = 15/61 (24%), Positives = 33/61 (54%) Frame = +1 Query: 253 RNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSV 432 ++ + +G +AFD+H N++L + E PK K ++ + R + + LRG+++ Sbjct: 22 QDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAER----EEKRVLGLVLLRGENL 77 Query: 433 I 435 + Sbjct: 78 V 78
>P40089:LSM5_YEAST U6 snRNA-associated Sm-like protein LSm5 - Saccharomyces cerevisiae| (Baker's yeast) Length = 93 Score = 30.8 bits (68), Expect = 4.3 Identities = 22/87 (25%), Positives = 45/87 (51%) Frame = +1 Query: 196 PLSILMLSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 375 PL ++ ++ N +VLI ++N++ G + FD N++LE+ E W P+ +K Sbjct: 8 PLEVIDKTI--NQKVLIVLQSNREFEGTLVGFDDFVNVILEDAVE-WLIDPEDESRNEKV 64 Query: 376 LPVNKDRFISKMFLRGDSVIIVLRNPK 456 + + +M L G+++ I++ K Sbjct: 65 M-----QHHGRMLLSGNNIAILVPGGK 86
>Q8U4R1:Y012_PYRFU UPF0286 protein PF0012 - Pyrococcus furiosus| Length = 267 Score = 28.5 bits (62), Expect(2) = 6.4 Identities = 15/31 (48%), Positives = 20/31 (64%) Frame = +1 Query: 364 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK 456 KKK PVN SK+ + G+S+I + RNPK Sbjct: 69 KKKREPVNWQPPGSKVKMEGNSLISIRRNPK 99 Score = 20.4 bits (41), Expect(2) = 6.4 Identities = 9/22 (40%), Positives = 15/22 (68%) Frame = +3 Query: 225 EQHPGAYQLPEQQEVAWSREGV 290 +++P ++ E EVA SREG+ Sbjct: 9 KENPRIEEIKELLEVAESREGL 30
>O35682:MYADM_MOUSE Myeloid-associated differentiation marker - Mus musculus (Mouse)| Length = 320 Score = 30.0 bits (66), Expect = 7.2 Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 1/60 (1%) Frame = -2 Query: 359 LPVFGTSVHISLTFSRTMLQ*RSNALTRPSNFLLFRQLISTWVLF-LTLSMRMERGPVLN 183 +PV T I+ T S + + ALT+P L QLIST V F L S+ GP+ N Sbjct: 1 MPVTVTRTTITTTTSSSTTVGSARALTQPLGLLRLLQLISTCVAFSLVASVGAWTGPMGN 60
>Q9HP27:SYT_HALSA Threonyl-tRNA synthetase - Halobacterium salinarium (Halobacterium| halobium) Length = 640 Score = 30.0 bits (66), Expect = 7.3 Identities = 22/95 (23%), Positives = 41/95 (43%) Frame = -1 Query: 483 WFTPSRPNSFRVPEDDDDRIPAEEHLAYEPVLVHREGLLLAFTSLWNLSPHLPDVLENHV 304 W P+ F +P+ D ++ A++PV++HR +L+ VL H Sbjct: 477 WDGPTVQLDFNMPDRFDLEYTGSDNDAHQPVMIHR--------ALYGSYERFFMVLIEHY 528 Query: 303 AVTVKRPHATKQLLVVPAVDKHLGVVLDAEHEDGE 199 A +Q+ ++P D +LG ++E G+ Sbjct: 529 NGRFPTWLAPEQVRILPVTDDNLGYAHRVKNELGD 563
>P20111:ACTN2_CHICK Alpha-actinin-2 - Gallus gallus (Chicken)| Length = 897 Score = 30.0 bits (66), Expect = 7.3 Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 12/76 (15%) Frame = +1 Query: 145 VAPVDQGKKEEEEFS----TGPLSILMLSVKNNTQVLINCRNN-------KKLLGRVRAF 291 + P Q K EE S TGPL M +K Q +IN ++N +L+ F Sbjct: 652 IGPWIQTKMEEIARSSIEMTGPLEDQMNQLKQYEQNIINYKHNIDKLEGDHQLIQEALVF 711 Query: 292 D-RHCNMVLENVREMW 336 D +H N +E++R W Sbjct: 712 DNKHTNYTMEHIRVGW 727
>Q94VJ5:NU2M_VARBN NADH-ubiquinone oxidoreductase chain 2 - Varanus bengalensis| nebulosis (Clouded monitor) Length = 345 Score = 29.6 bits (65), Expect = 9.4 Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 3/70 (4%) Frame = -2 Query: 458 HFGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTM---LQ*RSN 288 H G++ TMMT +P N+ L+NL L ++P+ T + + LT S+T+ + S+ Sbjct: 186 HLGWMITMMTIAP--NLTLLNLIL------YIPMTSL-TMLIMHLTMSKTLQNAMLIPSH 236 Query: 287 ALTRPSNFLL 258 +LT S FLL Sbjct: 237 SLTATSLFLL 246
>Q6VBQ5:MYADM_RAT Myeloid-associated differentiation marker - Rattus norvegicus (Rat)| Length = 318 Score = 29.6 bits (65), Expect = 9.4 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 1/60 (1%) Frame = -2 Query: 359 LPVFGTSVHISLTFSRTMLQ*RSNALTRPSNFLLFRQLISTWVLF-LTLSMRMERGPVLN 183 +PV T I+ T S + + ALT+P L QL+ST V F L S+ GP+ N Sbjct: 1 MPVTVTRTTITTTSSSSTTVGSARALTQPLGLLRLLQLVSTCVAFSLVASVGAWTGPMGN 60
>Q6L8H2:KRA53_HUMAN Keratin-associated protein 5-3 - Homo sapiens (Human)| Length = 238 Score = 29.6 bits (65), Expect = 9.4 Identities = 16/37 (43%), Positives = 17/37 (45%) Frame = -3 Query: 409 SCL*TCPCSPGGPSSCLYQSLEPQSTSP*RSREPCCS 299 SC C CS G SSC S S S +PCCS Sbjct: 130 SCYKPCCCSSGCGSSCCQSSCCKPSCSQSSCCKPCCS 166
>P87173:YB18_SCHPO Uncharacterized protein C3D6.08c - Schizosaccharomyces pombe| (Fission yeast) Length = 140 Score = 29.6 bits (65), Expect = 9.5 Identities = 11/28 (39%), Positives = 22/28 (78%) Frame = +1 Query: 235 QVLINCRNNKKLLGRVRAFDRHCNMVLE 318 +V++ R+ KKL+G +R+FD+ N++L+ Sbjct: 23 KVIVVLRDGKKLIGILRSFDQFANLMLQ 50
>Q5R628:LSM5_PONPY U6 snRNA-associated Sm-like protein LSm5 - Pongo pygmaeus| (Orangutan) Length = 91 Score = 29.6 bits (65), Expect = 9.5 Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 3/51 (5%) Frame = +1 Query: 187 STGPLSILMLSVKNN---TQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 330 +T P +L L + + +++ I +++K+++G + FD NMVLE+V E Sbjct: 6 TTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTE 56
>P62322:LSM5_MOUSE U6 snRNA-associated Sm-like protein LSm5 - Mus musculus (Mouse)| Length = 91 Score = 29.6 bits (65), Expect = 9.5 Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 3/51 (5%) Frame = +1 Query: 187 STGPLSILMLSVKNN---TQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 330 +T P +L L + + +++ I +++K+++G + FD NMVLE+V E Sbjct: 6 TTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTE 56
>Q9Y4Y9:LSM5_HUMAN U6 snRNA-associated Sm-like protein LSm5 - Homo sapiens (Human)| Length = 91 Score = 29.6 bits (65), Expect = 9.5 Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 3/51 (5%) Frame = +1 Query: 187 STGPLSILMLSVKNN---TQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 330 +T P +L L + + +++ I +++K+++G + FD NMVLE+V E Sbjct: 6 TTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTE 56
>Q2HJH0:LSM5_BOVIN U6 snRNA-associated Sm-like protein LSm5 - Bos taurus (Bovine)| Length = 91 Score = 29.6 bits (65), Expect = 9.5 Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 3/51 (5%) Frame = +1 Query: 187 STGPLSILMLSVKNN---TQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 330 +T P +L L + + +++ I +++K+++G + FD NMVLE+V E Sbjct: 6 TTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTE 56
>Q8PXJ1:GATA_METMA Glutamyl-tRNA(Gln) amidotransferase subunit A - Methanosarcina| mazei (Methanosarcina frisia) Length = 476 Score = 29.6 bits (65), Expect = 9.5 Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 2/51 (3%) Frame = +1 Query: 154 VDQGKKEEEEFSTGPLSILMLSVKNNTQV--LINCRNNKKLLGRVRAFDRH 300 ++Q KK ++E GPL+ + +++K+N V L N +K L G V F+ H Sbjct: 47 LEQAKKIDKEGHEGPLAGVPIAIKDNISVVGLPNSCGSKILEGYVPPFNAH 97 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 89,159,188 Number of extensions: 1904610 Number of successful extensions: 6024 Number of sequences better than 10.0: 53 Number of HSP's gapped: 5994 Number of HSP's successfully gapped: 54 Length of query: 209 Length of database: 100,686,439 Length adjustment: 108 Effective length of query: 101 Effective length of database: 71,062,579 Effective search space: 7177320479 Effective search space used: 7177320479 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
