ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf90n18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LOC_Os08g21460:12008.t01940:unspliced-genomic retrotransposo... 34 0.80
2LOC_Os02g14770:12002.t01271:unspliced-genomic phosphoenolpyr... 34 1.1
3LOC_Os02g02770:12002.t00176:unspliced-genomic pentatricopept... 34 1.1
4LOC_Os11g04930:12011.t00386:unspliced-genomic SPRY domain co... 33 1.5
5LOC_Os09g04200:12009.t00316:unspliced-genomic transposon pro... 33 1.5
6LOC_Os01g69970:12001.t06299:unspliced-genomic periodic trypt... 33 2.1
7LOC_Os04g39060:12004.t03476:unspliced-genomic CRS1 / YhbY do... 32 2.8
8LOC_Os01g74300:12001.t06709:unspliced-genomic metallothionei... 32 3.9
9LOC_Os12g18220:12012.t01672:unspliced-genomic thioredoxin fa... 31 5.4
10LOC_Os07g17840:12007.t01643:unspliced-genomic conserved hypo... 31 5.4
11LOC_Os07g10110:12007.t00885:unspliced-genomic expressed protein 31 5.4
12LOC_Os05g02070:12005.t00106:unspliced-genomic metallothionei... 31 5.4
13LOC_Os10g30054:12010.t02340:unspliced-genomic ENT domain con... 31 7.3
14LOC_Os05g24900:12005.t02147:unspliced-genomic expressed protein 31 7.3
15LOC_Os03g19420:12003.t01708:unspliced-genomic nicotianamine ... 31 7.3
16LOC_Os02g15920:12002.t01385:unspliced-genomic conserved hypo... 31 7.3
17LOC_Os09g11320:12009.t00922:unspliced-genomic retrotransposo... 31 7.4

>LOC_Os08g21460:12008.t01940:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass|
          Length = 3831
 Score = 34.1 bits (68), Expect = 0.80
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -1 / -3

                                          
Query: 523  HMYRLNHRRFYLGVYTCMAWHPLCSCRQLV 434
            H+ R NH  F    Y C+  H   SCR L+
Sbjct: 2614 HVNRCNHNSFPFSQYFCLIGHGFISCRNLI 2525



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>LOC_Os02g14770:12002.t01271:unspliced-genomic phosphoenolpyruvate carboxylase 1, putative, expressed|
          Length = 11795

 Score = 33.6 bits (67), Expect = 1.1
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3 / +3

                                       
Query: 9   PASRKHTGSS*PIPIKASNPNPKQPRRC 92
           PA R+ T SS P P +  + +P  PRRC
Sbjct: 579 PACRRGTPSSSPAPSRTCSTSPTSPRRC 662



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>LOC_Os02g02770:12002.t00176:unspliced-genomic pentatricopeptide, putative, expressed|
          Length = 2526

 Score = 33.6 bits (67), Expect = 1.1
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3 / +2

                                      
Query: 12  ASRKHTGSS*PIPIKASNPNPKQPRRC 92
           A+R++   S P P +AS P P  PRRC
Sbjct: 524 AARRNQDPSSPTPSRASTPPPPPPRRC 604



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>LOC_Os11g04930:12011.t00386:unspliced-genomic SPRY domain containing protein, expressed|
          Length = 3358

 Score = 33.1 bits (66), Expect = 1.5
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -1 / +3

                                             
Query: 520  MYRLNHRRFYLGVYTCMAWHPLCSCRQLVFTYI 422
            ++ L HRR  LGV+T  A   + SCR+  + Y+
Sbjct: 2097 IFLLYHRRLLLGVFTYPAIIAILSCRRFHYVYV 2195



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>LOC_Os09g04200:12009.t00316:unspliced-genomic transposon protein, putative, CACTA, En/Spm sub-class|
          Length = 2456

 Score = 33.1 bits (66), Expect = 1.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1 / -2

                               
Query: 529  HKHMYRLNHRRFYLGVYTC 473
            H HMY L H  FY+ +Y C
Sbjct: 1174 HTHMYNLKHLTFYVHIYIC 1118



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>LOC_Os01g69970:12001.t06299:unspliced-genomic periodic tryptophan protein 1, putative, expressed|
          Length = 4751

 Score = 32.7 bits (65), Expect = 2.1
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2 / -1

                                       
Query: 480  IHAWHGTRSAHAGSWCLHTYKDP*SCS 400
            IHA H  +SA   SWC + ++ P S S
Sbjct: 1292 IHAVHNGKSARGTSWCTNIFRSPSSVS 1212



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>LOC_Os04g39060:12004.t03476:unspliced-genomic CRS1 / YhbY domain containing protein, expressed|
          Length = 5943

 Score = 32.2 bits (64), Expect = 2.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1 / +3

                                          
Query: 340  MHAPCVHDIYDRPIHILPCNAT*SRVFVCM 429
            M  PC + +  R   +  CN T SRVF+C+
Sbjct: 3396 MAVPCAYCLAPRETLLSDCNITTSRVFICL 3485



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>LOC_Os01g74300:12001.t06709:unspliced-genomic metallothionein-like protein type 2, putative, expressed|
          Length = 1007

 Score = 31.8 bits (63), Expect = 3.9
 Identities = 13/18 (72%), Positives = 14/18 (77%)
 Frame = -2 / -1

                             
Query: 294 VPHLHWVQPQPPFSAAIS 241
           VPHL  +QPQ PFSA IS
Sbjct: 683 VPHLQVLQPQLPFSAPIS 630



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>LOC_Os12g18220:12012.t01672:unspliced-genomic thioredoxin family protein|
          Length = 1124

 Score = 31.3 bits (62), Expect = 5.4
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -1 / -3

                                              
Query: 523 HMYRLNHRRFYLGVYTCMAWHPLCSCRQLVFTYIQ 419
           H+Y  N RR Y+  Y  +  HP+C+     ++YI+
Sbjct: 714 HVYTDNFRRTYVMPYDHIVDHPVCTVCPRTYSYIR 610



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>LOC_Os07g17840:12007.t01643:unspliced-genomic conserved hypothetical protein|
          Length = 6361

 Score = 31.3 bits (62), Expect = 5.4
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1 / -3

                                               
Query: 415 VFVCM*TPAACMSRAGAMPCMYKPLNKIFCGLTYTC 522
           +++C+*T   C+   G    +YK    +F GL Y C
Sbjct: 716 LYMCI*TLYTCIFLVGIRMHVYKVCKHVFFGLLYVC 609



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>LOC_Os07g10110:12007.t00885:unspliced-genomic expressed protein|
          Length = 7805

 Score = 31.3 bits (62), Expect = 5.4
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -1 / +2

                                               
Query: 523  HMYRLNHRRFYLGVYTCMAWHPLCSCRQLVFTYIQ 419
            H+Y  N RR Y+  Y  +  HP+C+     ++YI+
Sbjct: 6221 HVYTDNFRRTYVMSYDHIVDHPVCTVCPRTYSYIR 6325



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>LOC_Os05g02070:12005.t00106:unspliced-genomic metallothionein-like protein type 2, putative, expressed|
          Length = 1112

 Score = 31.3 bits (62), Expect = 5.4
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = -2 / -1

                         
Query: 294 VPHLHWVQPQPPFS 253
           VPHL  +QPQPPFS
Sbjct: 650 VPHLQVLQPQPPFS 609



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>LOC_Os10g30054:12010.t02340:unspliced-genomic ENT domain containing protein, expressed|
          Length = 9476

 Score = 30.9 bits (61), Expect = 7.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3 / +1

                             
Query: 56   FDWYWLGASCVLPACWL 6
            F ++W+ A C+ P CWL
Sbjct: 1114 FFFFWVSAECLQPLCWL 1164



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>LOC_Os05g24900:12005.t02147:unspliced-genomic expressed protein|
          Length = 2054

 Score = 30.9 bits (61), Expect = 7.3
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3 / +3

                                          
Query: 101 RSKTSSRLLGIGVRGFDWYWLGASCVLPACW 9
           RS TSSR +   +R   W W  A+  LP+ W
Sbjct: 606 RSATSSRTVR*PMRVRPWAWTSAAASLPSSW 698



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>LOC_Os03g19420:12003.t01708:unspliced-genomic nicotianamine synthase 2, putative, expressed|
          Length = 1476

 Score = 30.9 bits (61), Expect = 7.3
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +3 / +1

                                            
Query: 435  TSCLHEQSGCHAMHV*TPK*NLLWFNLYMCLC 530
            + C+H   GC ++ V +  *N++   L +C C
Sbjct: 1087 SECVHSNPGCVSLSVTSAG*NIIGIGLCLCFC 1182



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>LOC_Os02g15920:12002.t01385:unspliced-genomic conserved hypothetical protein|
          Length = 4865

 Score = 30.9 bits (61), Expect = 7.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3 / -2

                                       
Query: 6    KPASRKHTGSS*PIPIKASNPNPKQPR 86
            +PA+R H  SS P+P +  +P+   PR
Sbjct: 3814 RPANRGHPASSSPVPSRPRHPSELHPR 3734



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>LOC_Os09g11320:12009.t00922:unspliced-genomic retrotransposon protein, putative, unclassified|
          Length = 4483

 Score = 30.9 bits (61), Expect = 7.4
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -1 / +2

                                               
Query: 523  HMYRLNHRRFYLGVYTCMAWHPLCSCRQLVFTYIQ 419
            H+Y  N RR Y+  Y  +  HP+C+     ++YI+
Sbjct: 2237 HVYTDNFRRTYVMPYDHIVDHPVCTVCPHTYSYIR 2341


  Database: tigr.seq.out
    Posted date:  Jul 20, 2007  8:58 AM
  Number of letters in database: 166,841,660
  Number of sequences in database:  56,278
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Sequences: 56278
Number of Hits to DB: 165,663,927
Number of extensions: 2365003
Number of successful extensions: 8750
Number of sequences better than 10.0: 17
Length of query: 183
Length of database: 55,613,886
Length adjustment: 48
Effective length of query: 135
Effective length of database: 52,912,542
Effective search space: 7143193170
Effective search space used: 7143193170
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
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