Clone Name | FLbaf90m01 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_001053244.1| Oryza sativa (japonica cultivar-group) Os02g0327000 (Os02g0327000) mRNA, complete cds Length = 1059 Score = 206 bits (104), Expect = 1e-49 Identities = 227/268 (84%) Strand = Plus / Plus Query: 115 gttggggcatctggttgggctggtgaaggtgcgggtgacgcgcggggtgaacctcgccat 174 ||||||||||||||||||||||||||||||||||||| | | || || ||||||||| | Sbjct: 197 gttggggcatctggttgggctggtgaaggtgcgggtggtgaggggcgtcaacctcgccgt 256 Query: 175 ccgcgacctccgctccagcgacccctacgtcgtcgtccgcatgggcaagcagaagctcaa 234 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | || Sbjct: 257 ccgcgacctccgctccagcgacccctacgtcatcgtccgcatgggcaagcagaagttgaa 316 Query: 235 gacgcgggtggtgaggaagagcatcaatccggagtggaacgacgagctcaccctctccgt 294 ||| || || | | |||| | |||||||||||||||||| || ||||||||||| | Sbjct: 317 gacacgagtcataaaaaagactaccaatccggagtggaacgatgaactcaccctctcgat 376 Query: 295 cgaagatcccactgttcctgtcaaactggacgtgttcgacaaggacacattcttcgacga 354 |||||||| | |||||||| | |||||| |||| ||||| ||||||||| |||| || Sbjct: 377 tgaagatccagcagttcctgttagactggaagtgtatgacaaagacacattcatcgatga 436 Query: 355 cccgatggggaacgcggagctggacatc 382 | ||||| || ||||||||||||||| Sbjct: 437 tgcaatgggcaatgcggagctggacatc 464 Score = 58.0 bits (29), Expect = 6e-05 Identities = 68/81 (83%) Strand = Plus / Plus Query: 514 ggtgaagcaggacgtggtgctcaggctcaggaacgtcgagtgcggggaggtcgagctcca 573 ||||||||| |||||||| ||||| || ||| | || || |||||||| | |||||||| Sbjct: 593 ggtgaagcaagacgtggttctcagactaagggatgtggaatgcggggaaattgagctcca 652 Query: 574 gctccagtggatcgacatccc 594 ||| |||||| |||||||||| Sbjct: 653 gcttcagtgggtcgacatccc 673
>dbj|AK104165.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-C07, full insert sequence Length = 966 Score = 206 bits (104), Expect = 1e-49 Identities = 227/268 (84%) Strand = Plus / Plus Query: 115 gttggggcatctggttgggctggtgaaggtgcgggtgacgcgcggggtgaacctcgccat 174 ||||||||||||||||||||||||||||||||||||| | | || || ||||||||| | Sbjct: 111 gttggggcatctggttgggctggtgaaggtgcgggtggtgaggggcgtcaacctcgccgt 170 Query: 175 ccgcgacctccgctccagcgacccctacgtcgtcgtccgcatgggcaagcagaagctcaa 234 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | || Sbjct: 171 ccgcgacctccgctccagcgacccctacgtcatcgtccgcatgggcaagcagaagttgaa 230 Query: 235 gacgcgggtggtgaggaagagcatcaatccggagtggaacgacgagctcaccctctccgt 294 ||| || || | | |||| | |||||||||||||||||| || ||||||||||| | Sbjct: 231 gacacgagtcataaaaaagactaccaatccggagtggaacgatgaactcaccctctcgat 290 Query: 295 cgaagatcccactgttcctgtcaaactggacgtgttcgacaaggacacattcttcgacga 354 |||||||| | |||||||| | |||||| |||| ||||| ||||||||| |||| || Sbjct: 291 tgaagatccagcagttcctgttagactggaagtgtatgacaaagacacattcatcgatga 350 Query: 355 cccgatggggaacgcggagctggacatc 382 | ||||| || ||||||||||||||| Sbjct: 351 tgcaatgggcaatgcggagctggacatc 378 Score = 58.0 bits (29), Expect = 6e-05 Identities = 68/81 (83%) Strand = Plus / Plus Query: 514 ggtgaagcaggacgtggtgctcaggctcaggaacgtcgagtgcggggaggtcgagctcca 573 ||||||||| |||||||| ||||| || ||| | || || |||||||| | |||||||| Sbjct: 507 ggtgaagcaagacgtggttctcagactaagggatgtggaatgcggggaaattgagctcca 566 Query: 574 gctccagtggatcgacatccc 594 ||| |||||| |||||||||| Sbjct: 567 gcttcagtgggtcgacatccc 587
>dbj|AK073631.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033052D22, full insert sequence Length = 1059 Score = 206 bits (104), Expect = 1e-49 Identities = 227/268 (84%) Strand = Plus / Plus Query: 115 gttggggcatctggttgggctggtgaaggtgcgggtgacgcgcggggtgaacctcgccat 174 ||||||||||||||||||||||||||||||||||||| | | || || ||||||||| | Sbjct: 197 gttggggcatctggttgggctggtgaaggtgcgggtggtgaggggcgtcaacctcgccgt 256 Query: 175 ccgcgacctccgctccagcgacccctacgtcgtcgtccgcatgggcaagcagaagctcaa 234 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | || Sbjct: 257 ccgcgacctccgctccagcgacccctacgtcatcgtccgcatgggcaagcagaagttgaa 316 Query: 235 gacgcgggtggtgaggaagagcatcaatccggagtggaacgacgagctcaccctctccgt 294 ||| || || | | |||| | |||||||||||||||||| || ||||||||||| | Sbjct: 317 gacacgagtcataaaaaagactaccaatccggagtggaacgatgaactcaccctctcgat 376 Query: 295 cgaagatcccactgttcctgtcaaactggacgtgttcgacaaggacacattcttcgacga 354 |||||||| | |||||||| | |||||| |||| ||||| ||||||||| |||| || Sbjct: 377 tgaagatccagcagttcctgttagactggaagtgtatgacaaagacacattcatcgatga 436 Query: 355 cccgatggggaacgcggagctggacatc 382 | ||||| || ||||||||||||||| Sbjct: 437 tgcaatgggcaatgcggagctggacatc 464 Score = 58.0 bits (29), Expect = 6e-05 Identities = 68/81 (83%) Strand = Plus / Plus Query: 514 ggtgaagcaggacgtggtgctcaggctcaggaacgtcgagtgcggggaggtcgagctcca 573 ||||||||| |||||||| ||||| || ||| | || || |||||||| | |||||||| Sbjct: 593 ggtgaagcaagacgtggttctcagactaagggatgtggaatgcggggaaattgagctcca 652 Query: 574 gctccagtggatcgacatccc 594 ||| |||||| |||||||||| Sbjct: 653 gcttcagtgggtcgacatccc 673
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 159 bits (80), Expect = 2e-35 Identities = 104/112 (92%) Strand = Plus / Plus Query: 115 gttggggcatctggttgggctggtgaaggtgcgggtgacgcgcggggtgaacctcgccat 174 ||||||||||||||||||||||||||||||||||||| | | || || ||||||||| | Sbjct: 13173076 gttggggcatctggttgggctggtgaaggtgcgggtggtgaggggcgtcaacctcgccgt 13173135 Query: 175 ccgcgacctccgctccagcgacccctacgtcgtcgtccgcatgggcaagcag 226 ||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 13173136 ccgcgacctccgctccagcgacccctacgtcatcgtccgcatgggcaagcag 13173187 Score = 58.0 bits (29), Expect = 6e-05 Identities = 68/81 (83%) Strand = Plus / Plus Query: 514 ggtgaagcaggacgtggtgctcaggctcaggaacgtcgagtgcggggaggtcgagctcca 573 ||||||||| |||||||| ||||| || ||| | || || |||||||| | |||||||| Sbjct: 13174812 ggtgaagcaagacgtggttctcagactaagggatgtggaatgcggggaaattgagctcca 13174871 Query: 574 gctccagtggatcgacatccc 594 ||| |||||| |||||||||| Sbjct: 13174872 gcttcagtgggtcgacatccc 13174892 Score = 50.1 bits (25), Expect = 0.015 Identities = 31/33 (93%) Strand = Plus / Plus Query: 259 caatccggagtggaacgacgagctcaccctctc 291 |||||||||||||||||| || ||||||||||| Sbjct: 13173527 caatccggagtggaacgatgaactcaccctctc 13173559
>dbj|AP005778.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0042G06 Length = 123571 Score = 159 bits (80), Expect = 2e-35 Identities = 104/112 (92%) Strand = Plus / Plus Query: 115 gttggggcatctggttgggctggtgaaggtgcgggtgacgcgcggggtgaacctcgccat 174 ||||||||||||||||||||||||||||||||||||| | | || || ||||||||| | Sbjct: 43106 gttggggcatctggttgggctggtgaaggtgcgggtggtgaggggcgtcaacctcgccgt 43165 Query: 175 ccgcgacctccgctccagcgacccctacgtcgtcgtccgcatgggcaagcag 226 ||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 43166 ccgcgacctccgctccagcgacccctacgtcatcgtccgcatgggcaagcag 43217 Score = 58.0 bits (29), Expect = 6e-05 Identities = 68/81 (83%) Strand = Plus / Plus Query: 514 ggtgaagcaggacgtggtgctcaggctcaggaacgtcgagtgcggggaggtcgagctcca 573 ||||||||| |||||||| ||||| || ||| | || || |||||||| | |||||||| Sbjct: 44842 ggtgaagcaagacgtggttctcagactaagggatgtggaatgcggggaaattgagctcca 44901 Query: 574 gctccagtggatcgacatccc 594 ||| |||||| |||||||||| Sbjct: 44902 gcttcagtgggtcgacatccc 44922 Score = 50.1 bits (25), Expect = 0.015 Identities = 31/33 (93%) Strand = Plus / Plus Query: 259 caatccggagtggaacgacgagctcaccctctc 291 |||||||||||||||||| || ||||||||||| Sbjct: 43557 caatccggagtggaacgatgaactcaccctctc 43589
>dbj|AP004789.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0476C12 Length = 157570 Score = 159 bits (80), Expect = 2e-35 Identities = 104/112 (92%) Strand = Plus / Plus Query: 115 gttggggcatctggttgggctggtgaaggtgcgggtgacgcgcggggtgaacctcgccat 174 ||||||||||||||||||||||||||||||||||||| | | || || ||||||||| | Sbjct: 149653 gttggggcatctggttgggctggtgaaggtgcgggtggtgaggggcgtcaacctcgccgt 149712 Query: 175 ccgcgacctccgctccagcgacccctacgtcgtcgtccgcatgggcaagcag 226 ||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 149713 ccgcgacctccgctccagcgacccctacgtcatcgtccgcatgggcaagcag 149764 Score = 58.0 bits (29), Expect = 6e-05 Identities = 68/81 (83%) Strand = Plus / Plus Query: 514 ggtgaagcaggacgtggtgctcaggctcaggaacgtcgagtgcggggaggtcgagctcca 573 ||||||||| |||||||| ||||| || ||| | || || |||||||| | |||||||| Sbjct: 151389 ggtgaagcaagacgtggttctcagactaagggatgtggaatgcggggaaattgagctcca 151448 Query: 574 gctccagtggatcgacatccc 594 ||| |||||| |||||||||| Sbjct: 151449 gcttcagtgggtcgacatccc 151469 Score = 50.1 bits (25), Expect = 0.015 Identities = 31/33 (93%) Strand = Plus / Plus Query: 259 caatccggagtggaacgacgagctcaccctctc 291 |||||||||||||||||| || ||||||||||| Sbjct: 150104 caatccggagtggaacgatgaactcaccctctc 150136
>gb|DQ245128.1| Zea mays clone 13191 mRNA sequence Length = 957 Score = 147 bits (74), Expect = 9e-32 Identities = 164/194 (84%) Strand = Plus / Plus Query: 158 ggggtgaacctcgccatccgcgacctccgctccagcgacccctacgtcgtcgtccgcatg 217 ||||||||||||||| ||||||||||||| |||||||| |||||||||||||| ||||| Sbjct: 233 ggggtgaacctcgccgtccgcgacctccgatccagcgatccctacgtcgtcgttcgcatc 292 Query: 218 ggcaagcagaagctcaagacgcgggtggtgaggaagagcatcaatccggagtggaacgac 277 ||||| ||||| | ||||| |||||||| | |||||| |||||||||| ||| ||||| Sbjct: 293 ggcaaacagaaattgaagacacgggtggtaaagaagagtgtcaatccggaatgggacgac 352 Query: 278 gagctcaccctctccgtcgaagatcccactgttcctgtcaaactggacgtgttcgacaag 337 || ||||||||||| ||||||| || |||||||| | | |||||| || || |||||| Sbjct: 353 gaactcaccctctctatcgaagaccctgctgttcctattagactggaagtttttgacaag 412 Query: 338 gacacattcttcga 351 ||||| ||| |||| Sbjct: 413 gacactttcgtcga 426 Score = 97.6 bits (49), Expect = 7e-17 Identities = 139/169 (82%) Strand = Plus / Plus Query: 437 accgtggtgaagaagctggtgcccaaccggcagaactgcctcgccgaggagagcgcggtg 496 |||||||| ||||| |||||||||||| | ||||||||||| |||||||||||| || | Sbjct: 509 accgtggtaaagaaactggtgcccaacagacagaactgcctagccgaggagagctcgata 568 Query: 497 tacctgtccgagggcacggtgaagcaggacgtggtgctcaggctcaggaacgtcgagtgc 556 || | || ||||| | ||||||||| ||| |||| | |||| |||||||| ||| || Sbjct: 569 tatatatcggaggggaaggtgaagcaagacatggttgtacggctgaggaacgtagagagc 628 Query: 557 ggggaggtcgagctccagctccagtggatcgacatccccggctccaagg 605 ||||| | ||||||||||| |||||||||||| |||| ||||| |||| Sbjct: 629 ggggaaatagagctccagcttcagtggatcgacctccctggctctaagg 677
>gb|DQ244350.1| Zea mays clone 5343 mRNA sequence Length = 793 Score = 133 bits (67), Expect = 1e-27 Identities = 183/221 (82%), Gaps = 3/221 (1%) Strand = Plus / Plus Query: 165 acctcgccatccgcgacctccgctccagcgacccctacgtcgtcgtccgcatgggcaa-- 222 |||||||||||||||||||||| ||||||||||||||||||||| | ||||| ||||| Sbjct: 163 acctcgccatccgcgacctccgatccagcgacccctacgtcgtccttcgcatcggcaagg 222 Query: 223 -gcagaagctcaagacgcgggtggtgaggaagagcatcaatccggagtggaacgacgagc 281 |||||| | |||||||| ||||| | |||||||||||||||||| |||||||| | | Sbjct: 223 cgcagaaagtgaagacgcgagtggtcaagaagagcatcaatccggaatggaacgaaaaac 282 Query: 282 tcaccctctccgtcgaagatcccactgttcctgtcaaactggacgtgttcgacaaggaca 341 |||||||||| | ||||| || | |||||| | | |||||| || || |||||||||| Sbjct: 283 tcaccctctctattgaagaccctgccgttcctattagactggaagtatttgacaaggaca 342 Query: 342 cattcttcgacgacccgatggggaacgcggagctggacatc 382 | ||| | || || | ||||| |||||||||||||||||| Sbjct: 343 ctttcgttgatgatacaatgggtaacgcggagctggacatc 383 Score = 83.8 bits (42), Expect = 1e-12 Identities = 135/166 (81%) Strand = Plus / Plus Query: 440 gtggtgaagaagctggtgcccaaccggcagaactgcctcgccgaggagagcgcggtgtac 499 ||||| |||||||||||||||||| | ||||||||||| |||||||||||| | | ||| Sbjct: 438 gtggtaaagaagctggtgcccaacagacagaactgcctagccgaggagagctccatatac 497 Query: 500 ctgtccgagggcacggtgaagcaggacgtggtgctcaggctcaggaacgtcgagtgcggg 559 | || ||||| | ||||||||| ||| |||| | |||| |||||||| |||||||| Sbjct: 498 atatcggaggggaaggtgaagcaagacctggtcgtacggctaaggaacgtagagtgcggc 557 Query: 560 gaggtcgagctccagctccagtggatcgacatccccggctccaagg 605 || |||||||||| || |||||| || || |||| ||||| |||| Sbjct: 558 gaaatcgagctccaacttcagtgggtccacctccctggctctaagg 603
>emb|CT830200.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA114M09, full insert sequence Length = 1012 Score = 61.9 bits (31), Expect = 4e-06 Identities = 46/51 (90%) Strand = Plus / Plus Query: 164 aacctcgccatccgcgacctccgctccagcgacccctacgtcgtcgtccgc 214 ||||||||| |||| ||| || |||||||||||||||||||||||||||| Sbjct: 282 aacctcgccgtccgggacttcacctccagcgacccctacgtcgtcgtccgc 332
>ref|NM_001069218.1| Oryza sativa (japonica cultivar-group) Os09g0251800 (Os09g0251800) mRNA, complete cds Length = 1001 Score = 61.9 bits (31), Expect = 4e-06 Identities = 46/51 (90%) Strand = Plus / Plus Query: 164 aacctcgccatccgcgacctccgctccagcgacccctacgtcgtcgtccgc 214 ||||||||| |||| ||| || |||||||||||||||||||||||||||| Sbjct: 267 aacctcgccgtccgggacttcacctccagcgacccctacgtcgtcgtccgc 317
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9 Length = 22696651 Score = 61.9 bits (31), Expect = 4e-06 Identities = 46/51 (90%) Strand = Plus / Plus Query: 164 aacctcgccatccgcgacctccgctccagcgacccctacgtcgtcgtccgc 214 ||||||||| |||| ||| || |||||||||||||||||||||||||||| Sbjct: 3895937 aacctcgccgtccgggacttcacctccagcgacccctacgtcgtcgtccgc 3895987
>dbj|AP005905.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:B1080A02 Length = 151360 Score = 61.9 bits (31), Expect = 4e-06 Identities = 46/51 (90%) Strand = Plus / Plus Query: 164 aacctcgccatccgcgacctccgctccagcgacccctacgtcgtcgtccgc 214 ||||||||| |||| ||| || |||||||||||||||||||||||||||| Sbjct: 135453 aacctcgccgtccgggacttcacctccagcgacccctacgtcgtcgtccgc 135503
>dbj|AP005590.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0574F11 Length = 159891 Score = 61.9 bits (31), Expect = 4e-06 Identities = 46/51 (90%) Strand = Plus / Plus Query: 164 aacctcgccatccgcgacctccgctccagcgacccctacgtcgtcgtccgc 214 ||||||||| |||| ||| || |||||||||||||||||||||||||||| Sbjct: 27449 aacctcgccgtccgggacttcacctccagcgacccctacgtcgtcgtccgc 27499
>dbj|AK104010.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-004-C07, full insert sequence Length = 957 Score = 61.9 bits (31), Expect = 4e-06 Identities = 46/51 (90%) Strand = Plus / Plus Query: 164 aacctcgccatccgcgacctccgctccagcgacccctacgtcgtcgtccgc 214 ||||||||| |||| ||| || |||||||||||||||||||||||||||| Sbjct: 252 aacctcgccgtccgggacttcacctccagcgacccctacgtcgtcgtccgc 302
>dbj|AK061218.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-210-E07, full insert sequence Length = 1001 Score = 61.9 bits (31), Expect = 4e-06 Identities = 46/51 (90%) Strand = Plus / Plus Query: 164 aacctcgccatccgcgacctccgctccagcgacccctacgtcgtcgtccgc 214 ||||||||| |||| ||| || |||||||||||||||||||||||||||| Sbjct: 267 aacctcgccgtccgggacttcacctccagcgacccctacgtcgtcgtccgc 317
>gb|AY103837.1| Zea mays PCO137419 mRNA sequence Length = 868 Score = 48.1 bits (24), Expect = 0.060 Identities = 54/64 (84%) Strand = Plus / Plus Query: 520 gcaggacgtggtgctcaggctcaggaacgtcgagtgcggggaggtcgagctccagctcca 579 ||||||| || | ||| ||||||||||||||||| |||||||| | |||| ||||| || Sbjct: 597 gcaggacatgatcctccggctcaggaacgtcgagagcggggagatacagctgcagctgca 656 Query: 580 gtgg 583 |||| Sbjct: 657 gtgg 660
>gb|AC092622.2| Homo sapiens BAC clone RP11-254O14 from 2, complete sequence Length = 19531 Score = 46.1 bits (23), Expect = 0.24 Identities = 26/27 (96%) Strand = Plus / Minus Query: 898 gagtaatttttcttcttcttttctgag 924 |||||||||||||| |||||||||||| Sbjct: 4470 gagtaatttttctttttcttttctgag 4444
>gb|CP000458.1| Burkholderia cenocepacia HI2424 chromosome 1, complete genome Length = 3483902 Score = 44.1 bits (22), Expect = 0.93 Identities = 22/22 (100%) Strand = Plus / Plus Query: 67 ccgcgaacggcggcgaagccga 88 |||||||||||||||||||||| Sbjct: 701 ccgcgaacggcggcgaagccga 722
>gb|CP000378.1| Burkholderia cenocepacia AU 1054 chromosome 1, complete sequence Length = 3294563 Score = 44.1 bits (22), Expect = 0.93 Identities = 22/22 (100%) Strand = Plus / Plus Query: 67 ccgcgaacggcggcgaagccga 88 |||||||||||||||||||||| Sbjct: 2802880 ccgcgaacggcggcgaagccga 2802901
>ref|NM_113379.1| Arabidopsis thaliana unknown protein (AT3G24680) mRNA, complete cds Length = 1464 Score = 44.1 bits (22), Expect = 0.93 Identities = 22/22 (100%) Strand = Plus / Minus Query: 692 taaatcatgtttagaatcgaag 713 |||||||||||||||||||||| Sbjct: 264 taaatcatgtttagaatcgaag 243
>gb|DQ056608.1| Arabidopsis thaliana putative zinc finger protein (At3g24680) mRNA, complete cds Length = 1464 Score = 44.1 bits (22), Expect = 0.93 Identities = 22/22 (100%) Strand = Plus / Minus Query: 692 taaatcatgtttagaatcgaag 713 |||||||||||||||||||||| Sbjct: 264 taaatcatgtttagaatcgaag 243
>emb|Y12363.1|ABFLCA A.brasilense flcA gene Length = 2517 Score = 44.1 bits (22), Expect = 0.93 Identities = 22/22 (100%) Strand = Plus / Plus Query: 499 cctgtccgagggcacggtgaag 520 |||||||||||||||||||||| Sbjct: 1780 cctgtccgagggcacggtgaag 1801
>dbj|AP000740.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MSD24 Length = 40018 Score = 44.1 bits (22), Expect = 0.93 Identities = 22/22 (100%) Strand = Plus / Plus Query: 692 taaatcatgtttagaatcgaag 713 |||||||||||||||||||||| Sbjct: 28370 taaatcatgtttagaatcgaag 28391
>gb|L47193.1|ATHRETR Arabidopsis thaliana (clone DW15) zinc-finger protein gene and reverse transcriptase gene, complete cds Length = 7808 Score = 44.1 bits (22), Expect = 0.93 Identities = 22/22 (100%) Strand = Plus / Minus Query: 692 taaatcatgtttagaatcgaag 713 |||||||||||||||||||||| Sbjct: 1703 taaatcatgtttagaatcgaag 1682
>gb|DQ273697.1| Crocodylus niloticus mitochondrion, complete genome Length = 16776 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 738 gatattatatatatgactctg 758 ||||||||||||||||||||| Sbjct: 13898 gatattatatatatgactctg 13878
>ref|NM_001066255.1| Oryza sativa (japonica cultivar-group) Os07g0501700 (Os07g0501700) mRNA, complete cds Length = 964 Score = 42.1 bits (21), Expect = 3.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 190 cagcgacccctacgtcgtcgtccgc 214 ||||||||||||||||||| ||||| Sbjct: 279 cagcgacccctacgtcgtcctccgc 303
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 42.1 bits (21), Expect = 3.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 398 gccgcgaggatgcgggtccagatgc 422 ||||| ||||||||||||||||||| Sbjct: 739715 gccgccaggatgcgggtccagatgc 739739 Score = 42.1 bits (21), Expect = 3.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 398 gccgcgaggatgcgggtccagatgc 422 ||||| ||||||||||||||||||| Sbjct: 1305617 gccgccaggatgcgggtccagatgc 1305593 Score = 42.1 bits (21), Expect = 3.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 398 gccgcgaggatgcgggtccagatgc 422 ||||| ||||||||||||||||||| Sbjct: 1875897 gccgccaggatgcgggtccagatgc 1875873 Score = 42.1 bits (21), Expect = 3.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 398 gccgcgaggatgcgggtccagatgc 422 ||||| ||||||||||||||||||| Sbjct: 2083219 gccgccaggatgcgggtccagatgc 2083243
>gb|AC166653.5| Mus musculus BAC clone RP24-84J23 from chromosome 14, complete sequence Length = 223142 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 901 taatttttcttcttcttttct 921 ||||||||||||||||||||| Sbjct: 132624 taatttttcttcttcttttct 132644
>gb|AF165926.2| Homo sapiens chromosome 5p13 BAC clone djn085o06 containing NUP155 gene, complete sequence Length = 165617 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 899 agtaatttttcttcttctttt 919 ||||||||||||||||||||| Sbjct: 20621 agtaatttttcttcttctttt 20601
>dbj|AP007157.1| Aspergillus oryzae RIB40 genomic DNA, SC023 Length = 2661830 Score = 42.1 bits (21), Expect = 3.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 897 tgagtaatttttcttcttcttttct 921 ||||||||||||||||||| ||||| Sbjct: 1273754 tgagtaatttttcttcttcatttct 1273778
>gb|AC104390.6| Homo sapiens chromosome 15, clone CTD-2643K12, complete sequence Length = 201225 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 901 taatttttcttcttcttttct 921 ||||||||||||||||||||| Sbjct: 23673 taatttttcttcttcttttct 23693
>gb|AC124657.5| Homo sapiens chromosome 11, clone RP11-624D11, complete sequence Length = 155985 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 904 tttttcttcttcttttctgag 924 ||||||||||||||||||||| Sbjct: 83585 tttttcttcttcttttctgag 83605
>gb|AC117532.2| Homo sapiens chromosome 5 clone RP11-648M2, complete sequence Length = 177782 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 899 agtaatttttcttcttctttt 919 ||||||||||||||||||||| Sbjct: 111676 agtaatttttcttcttctttt 111656
>gb|AC090994.8| Homo sapiens chromosome 8, clone RP11-536K17, complete sequence Length = 200326 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 903 atttttcttcttcttttctga 923 ||||||||||||||||||||| Sbjct: 48367 atttttcttcttcttttctga 48347
>emb|CT025601.7| Mouse DNA sequence from clone RP23-424B7 on chromosome 17, complete sequence Length = 197841 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 904 tttttcttcttcttttctgag 924 ||||||||||||||||||||| Sbjct: 145923 tttttcttcttcttttctgag 145943
>emb|CR847546.6| Zebrafish DNA sequence from clone CH211-261D5 in linkage group 1, complete sequence Length = 147811 Score = 42.1 bits (21), Expect = 3.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 637 ttagctctgcactctctgctcttgg 661 |||||||||||| |||||||||||| Sbjct: 32575 ttagctctgcacactctgctcttgg 32551
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7 Length = 29644043 Score = 42.1 bits (21), Expect = 3.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 190 cagcgacccctacgtcgtcgtccgc 214 ||||||||||||||||||| ||||| Sbjct: 18858486 cagcgacccctacgtcgtcctccgc 18858510
>gb|AC096948.2| Homo sapiens chromosome 1 clone RP4-809J13, complete sequence Length = 115596 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 899 agtaatttttcttcttctttt 919 ||||||||||||||||||||| Sbjct: 376 agtaatttttcttcttctttt 356
>emb|AL139239.18| Human DNA sequence from clone RP11-19C6 on chromosome 10 Contains the 5' end of the CRTAC1 gene for cartilage acidic protein 1 and two CpG islands, complete sequence Length = 161235 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 894 tgatgagtaatttttcttctt 914 ||||||||||||||||||||| Sbjct: 20668 tgatgagtaatttttcttctt 20688
>emb|AL031745.8|PFMAL1P2 Plasmodium falciparum DNA from MAL1P2 Length = 384550 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 901 taatttttcttcttcttttct 921 ||||||||||||||||||||| Sbjct: 213343 taatttttcttcttcttttct 213323
>gb|AC097378.2| Homo sapiens BAC clone RP11-123G5 from 4, complete sequence Length = 157417 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 904 tttttcttcttcttttctgag 924 ||||||||||||||||||||| Sbjct: 53147 tttttcttcttcttttctgag 53127
>emb|CR858635.1| Pongo pygmaeus mRNA; cDNA DKFZp459N0643 (from clone DKFZp459N0643) Length = 2221 Score = 42.1 bits (21), Expect = 3.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 904 tttttcttcttcttttctgaggaaa 928 |||||||||||||||||||| |||| Sbjct: 739 tttttcttcttcttttctgatgaaa 763
>gb|AC010359.5|AC010359 Homo sapiens chromosome 5 clone CTD-2033C11, complete sequence Length = 204843 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 824 ggattccatcctcctttcttg 844 ||||||||||||||||||||| Sbjct: 156260 ggattccatcctcctttcttg 156240
>gb|AC138392.2| Homo sapiens chromosome 1 clone RP11-181C21, complete sequence Length = 161502 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 899 agtaatttttcttcttctttt 919 ||||||||||||||||||||| Sbjct: 86971 agtaatttttcttcttctttt 86951
>gb|AC080032.12| Homo sapiens chromosome 15, clone RP11-349O9, complete sequence Length = 181413 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 901 taatttttcttcttcttttct 921 ||||||||||||||||||||| Sbjct: 34679 taatttttcttcttcttttct 34659
>dbj|AP003995.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1112_F06 Length = 104419 Score = 42.1 bits (21), Expect = 3.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 190 cagcgacccctacgtcgtcgtccgc 214 ||||||||||||||||||| ||||| Sbjct: 58672 cagcgacccctacgtcgtcctccgc 58696
>dbj|AK070911.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023068D10, full insert sequence Length = 963 Score = 42.1 bits (21), Expect = 3.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 190 cagcgacccctacgtcgtcgtccgc 214 ||||||||||||||||||| ||||| Sbjct: 280 cagcgacccctacgtcgtcctccgc 304
>gb|AY111262.1| Zea mays CL57609_1 mRNA sequence Length = 862 Score = 42.1 bits (21), Expect = 3.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 190 cagcgacccctacgtcgtcgtccgc 214 ||||||||||||||||||| ||||| Sbjct: 626 cagcgacccctacgtcgtcctccgc 602
>emb|CR394550.5| Zebrafish DNA sequence from clone CH211-231O11 in linkage group 10, complete sequence Length = 170825 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 901 taatttttcttcttcttttct 921 ||||||||||||||||||||| Sbjct: 8656 taatttttcttcttcttttct 8636
>emb|AJ810452.1| Crocodylus niloticus complete mitochondrial genome Length = 16830 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 738 gatattatatatatgactctg 758 ||||||||||||||||||||| Sbjct: 13893 gatattatatatatgactctg 13873
>emb|CT010496.14| Mouse DNA sequence from clone RP23-193I7 on chromosome 17, complete sequence Length = 209258 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 904 tttttcttcttcttttctgag 924 ||||||||||||||||||||| Sbjct: 39318 tttttcttcttcttttctgag 39338 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 161,275,464 Number of extensions: 9699931 Number of successful extensions: 241159 Number of sequences better than 10.0: 51 Number of HSP's gapped: 241150 Number of HSP's successfully gapped: 68 Length of query: 977 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 954 Effective length of database: 18,503,978,556 Effective search space: 17652795542424 Effective search space used: 17652795542424 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)