ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf88c12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LOC_Os02g17850:12002.t01579:unspliced-genomic TOM2B, putativ... 58 4e-22
2LOC_Os01g46950:12001.t04145:unspliced-genomic apospory-assoc... 36 0.19
3LOC_Os11g05790:12011.t00470:unspliced-genomic hypothetical p... 36 0.20
4LOC_Os04g44650:12004.t04005:unspliced-genomic ferredoxin-thi... 33 2.5
5LOC_Os07g07340:12007.t00612:unspliced-genomic glucan endo-1,... 32 3.4
6LOC_Os07g42160:12007.t03871:unspliced-genomic GTP pyrophosph... 29 6.2
7LOC_Os04g49220:12004.t04438:unspliced-genomic tim10/DDP fami... 31 6.4
8LOC_Os06g18970:12006.t01720:unspliced-genomic expressed protein 31 6.4
9LOC_Os03g20450:12003.t01803:unspliced-genomic ATP binding pr... 29 8.6
10LOC_Os11g42080:12011.t03739:unspliced-genomic expressed protein 31 8.8
11LOC_Os05g12170:12005.t01047:unspliced-genomic plant-specific... 31 8.8

>LOC_Os02g17850:12002.t01579:unspliced-genomic TOM2B, putative, expressed|
          Length = 3110
 Score = 55.6 bits (115), Expect(4) = 4e-22
 Identities = 24/27 (88%), Positives = 26/27 (96%)
 Frame = +2 / +1

                                      
Query: 80  VAEQIGQAVQSTSNLLQLMEQSSPAQI 160
           VAEQI QAVQSTSNLLQLME+SSPAQ+
Sbjct: 64  VAEQIAQAVQSTSNLLQLMEESSPAQV 144



 Score = 43.2 bits (88), Expect(4) = 4e-22
 Identities = 18/22 (81%), Positives = 21/22 (95%)
 Frame = +2 / +3

                                  
Query: 224  VLQQLPNVISSLDAFMDSSLQR 289
            VL QLP+VISSLDA+MD+SLQR
Sbjct: 1488 VLHQLPSVISSLDAYMDASLQR 1553



 Score = 39.6 bits (80), Expect(4) = 4e-22
 Identities = 15/21 (71%), Positives = 16/21 (76%)
 Frame = +3 / +1

                                 
Query: 162  TWLNSLRISWQKHLLQRTQSK 224
            TW N  R SWQKHLLQRTQ +
Sbjct: 1363 TWQNFPRNSWQKHLLQRTQGR 1425



 Score = 29.5 bits (58), Expect(4) = 4e-22
 Identities = 13/19 (68%), Positives = 14/19 (73%)
 Frame = +2 / +1

                               
Query: 287  RKIKRILSLENSGLTDVFT 343
            RK +R L LENSGL D FT
Sbjct: 1810 RKHRRKLRLENSGLNDKFT 1866



 Score = 57.9 bits (120), Expect(3) = 3e-17
 Identities = 20/23 (86%), Positives = 21/23 (91%)
 Frame = -1 / -1

                                  
Query: 156 WAGEDCSMSWRRLEVDCTACPIC 88
           WAGED SMSWRRL+VDCTAC IC
Sbjct: 140 WAGEDSSMSWRRLDVDCTACAIC 72



 Score = 41.4 bits (84), Expect(3) = 3e-17
 Identities = 16/21 (76%), Positives = 17/21 (80%)
 Frame = -1 / -2

                                 
Query: 225  TCSVFFVRDAFAKRFLGSLAK 163
            TC VFF RDAFAK FLGS A+
Sbjct: 1426 TCPVFFARDAFAKSFLGSFAR 1364



 Score = 32.7 bits (65), Expect(3) = 3e-17
 Identities = 13/16 (81%), Positives = 14/16 (87%)
 Frame = -3 / -1

                            
Query: 286  LQTTVHKSIQGRNYIR 239
            LQT+VH SIQGRNY R
Sbjct: 1550 LQTSVHISIQGRNYTR 1503



 Score = 43.2 bits (88), Expect(3) = 3e-10
 Identities = 14/18 (77%), Positives = 18/18 (100%)
 Frame = +3 / +1

                              
Query: 234  SYLM*FLPWMLLWTVVCK 287
            +YL+*FLPWML+WT+VCK
Sbjct: 1498 NYLV*FLPWMLIWTLVCK 1551



 Score = 34.1 bits (68), Expect(3) = 3e-10
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = +1 / +3

                           
Query: 109 VHLQPSPAHGAVLPCP 156
           VH+QP PAHG VLP P
Sbjct: 93  VHVQPPPAHGGVLPGP 140



 Score = 30.4 bits (60), Expect(3) = 3e-10
 Identities = 14/19 (73%), Positives = 15/19 (78%)
 Frame = +1 / +2

                               
Query: 166  G*TP*ESLGKSISYKEHRA 222
            G T  E+LGKSIS KEHRA
Sbjct: 1367 GKTSQETLGKSISCKEHRA 1423



 Score = 35.9 bits (72), Expect(4) = 4e-08
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = -3 / -3

                           
Query: 157 LGRGGLLHELEKVGGG 110
           LGRGGLLHELE+VG G
Sbjct: 141 LGRGGLLHELEEVGRG 94



 Score = 32.7 bits (65), Expect(4) = 4e-08
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = -3 / -1

                             
Query: 205  KRCFCQEILREFSQVDL 155
            KRCFCQE L +F QV L
Sbjct: 1406 KRCFCQEFLGKFCQVSL 1356



 Score = 28.1 bits (55), Expect(4) = 4e-08
 Identities = 12/14 (85%), Positives = 12/14 (85%)
 Frame = -1 / -2

                          
Query: 264  ASKEEITLGSCCST 223
            ASKEEITLGS C T
Sbjct: 1528 ASKEEITLGS*CRT 1487



 Score = 21.7 bits (41), Expect(4) = 4e-08
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -2 / -3

                        
Query: 284  ANYCP*KHPRKK 249
            AN  P KHPRKK
Sbjct: 1548 AN*RPYKHPRKK 1513



 Score = 42.3 bits (86), Expect = 0.003
 Identities = 17/27 (62%), Positives = 20/27 (74%)
 Frame = +1 / +2

                                       
Query: 232  TAT*CNFFLGCFYGQ*FAKKDQKNTEP 312
            + T*CNFFLGC YG+*FAK    N+ P
Sbjct: 1496 STT*CNFFLGCLYGR*FAKVIFSNSFP 1576



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>LOC_Os01g46950:12001.t04145:unspliced-genomic apospory-associated protein C, putative, expressed|
          Length = 4186

 Score = 36.3 bits (73), Expect = 0.19
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3 / +1

                                  
Query: 414 TEELYSWQDSGGRWRWNVQKRVL 482
           T EL+ W+ SGGRWRW    R +
Sbjct: 448 TSELF*WRPSGGRWRWRCFARCI 516



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>LOC_Os11g05790:12011.t00470:unspliced-genomic hypothetical protein|
          Length = 2259

 Score = 36.3 bits (73), Expect = 0.20
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -1 / -1

                                                   
Query: 231 CSTCSVFFVRDAFAKRFLGSLAKWIWAGEDCSMSWRRLEV 112
           CS CS  F RD   +  +G   K  +AG  C   WR+++V
Sbjct: 270 CSVCSKGFKRDDNLRMHMGGHGKEAYAGAYCVRPWRQVQV 151



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>LOC_Os04g44650:12004.t04005:unspliced-genomic ferredoxin-thioredoxin reductase, variable chain, putative,|
           expressed
          Length = 871

 Score = 32.7 bits (65), Expect = 2.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3 / -2

                                      
Query: 432 WQDSGGRWRWNVQKRVLVAYWCFETTR 512
           W+ +  RWRW V    LVA W   ++R
Sbjct: 186 WRGTPRRWRWRVPSARLVAVWGISSSR 106



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>LOC_Os07g07340:12007.t00612:unspliced-genomic glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed|
          Length = 3421

 Score = 32.2 bits (64), Expect = 3.4
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = -1 / +3

                                             
Query: 189  KRFLGSLAKWIWAGEDCSMSWRRLEVDCTACPI 91
            K+ +  +  W W G   SM W    + C+  PI
Sbjct: 1170 KQGINQIKNWFWGGPVLSMVWTHGNITCSCSPI 1268



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>LOC_Os07g42160:12007.t03871:unspliced-genomic GTP pyrophosphokinase, putative, expressed|
          Length = 3519

 Score = 29.0 bits (57), Expect(2) = 6.2
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3 / -1

                          
Query: 154 GRGGLLHELEKVGGG 110
           GRGG+LH L + GGG
Sbjct: 264 GRGGVLHHLHRHGGG 220



 Score = 23.5 bits (45), Expect(2) = 6.2
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -1 / -2

                        
Query: 252  EITLGSCCSTCS 217
            EITL SCC  C+
Sbjct: 2000 EITLPSCCRYCT 1965



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>LOC_Os04g49220:12004.t04438:unspliced-genomic tim10/DDP family zinc finger containing protein|
          Length = 5344

 Score = 31.3 bits (62), Expect = 6.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3 / -3

                                      
Query: 198  HLLQRTQSKCYNSYLM*FLPWMLLWT 275
            +LL     +CYN Y + F+PW+  WT
Sbjct: 2516 YLLHVFLLQCYNFYHLNFIPWVSPWT 2439



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>LOC_Os06g18970:12006.t01720:unspliced-genomic expressed protein|
          Length = 6828

 Score = 31.3 bits (62), Expect = 6.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1 / +3

                                    
Query: 168 AKWIWAGEDCSMSWRRLEVDCTACP 94
           A+W+W    C+ SWRR  V  +  P
Sbjct: 165 ARWVWGRRLCASSWRRRHVCRSPAP 239



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>LOC_Os03g20450:12003.t01803:unspliced-genomic ATP binding protein, putative, expressed|
          Length = 5067

 Score = 29.0 bits (57), Expect(2) = 8.6
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -1 / +1

                                   
Query: 156  WAGEDCSMSWRRLEVDCTACPIC 88
            W GE    +W  + +DC  C +C
Sbjct: 3178 WRGETRYETWNSVCIDCMCCSLC 3246



 Score = 23.5 bits (45), Expect(2) = 8.6
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1 / +2

                        
Query: 243 LGSCCSTCSVFFV 205
           LG CCS CS+  V
Sbjct: 257 LGICCSHCSILGV 295



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>LOC_Os11g42080:12011.t03739:unspliced-genomic expressed protein|
          Length = 2196

 Score = 30.9 bits (61), Expect = 8.8
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3 / +2

                                     
Query: 441 SGGRWRWNVQKRVLVAYWCFETTRST 518
           S G WRWN + R   + WC  T  ST
Sbjct: 770 SSGGWRWNRRTRWWRSSWCSCTNAST 847



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>LOC_Os05g12170:12005.t01047:unspliced-genomic plant-specific domain TIGR01589 family protein, expressed|
          Length = 6811

 Score = 30.9 bits (61), Expect = 8.8
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3 / -3

                                       
Query: 225  CYNSYLM*FLPWMLLWTVVCKERSKEY 305
            C N +++*FL   L+W V  K++ ++Y
Sbjct: 5132 CINGFIL*FLSKHLIWRVSSKQQKRKY 5052


  Database: tigr.seq.out
    Posted date:  Jul 20, 2007  8:58 AM
  Number of letters in database: 166,841,660
  Number of sequences in database:  56,278
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Sequences: 56278
Number of Hits to DB: 230,657,574
Number of extensions: 3512812
Number of successful extensions: 13211
Number of sequences better than 10.0: 11
Length of query: 210
Length of database: 55,613,886
Length adjustment: 48
Effective length of query: 162
Effective length of database: 52,912,542
Effective search space: 8571831804
Effective search space used: 8571831804
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
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