ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf88a10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AK073993:Os03g0618900 35 0.25
2AK107081:Os06g0547500 34 0.43
3AK071346:Os06g0114900 31 2.8
4AK121480:Os12g0547100 31 3.6
5AK105589:Os12g0547100 31 3.6
6AK108761:Os08g0168000 30 8.0

>AK073993:Os03g0618900 |
          Length = 271
 Score = 34.7 bits (78), Expect = 0.25
 Identities = 26/77 (33%), Positives = 30/77 (38%)
 Frame = +1

Query: 190 QLHPLPCRRPLVPHLPARLSPSA*PSRLLCCW*QPREEHAVQGRRC*PSSPPLRCAHGTP 369
           ++ P  CR P +P   ARL P   P        Q R    V  RR  PSSP     HG P
Sbjct: 130 RIWPPRCRIPSLPRRRARLPPPGSPRSAPSPSRQRRRVAVVTPRRRHPSSP-----HGCP 184

Query: 370 CSRSGEGRTRLQASAQW 420
            + S  G T       W
Sbjct: 185 ATNSDGGETERGEEGGW 201



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>AK107081:Os06g0547500 |
          Length = 212

 Score = 33.9 bits (76), Expect = 0.43
 Identities = 25/59 (42%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = +2

Query: 263 RLVSSVAGDSRGRSTQCRGGDASRPPHPYAA-LMAPHVPDLERDGRGYKHRRNGPWRCG 436
           R VSS A     R    RG D  RPP P    L +P +P L R G G   RR   WR G
Sbjct: 32  RGVSSGAAGGERRGLWERGSDG-RPPSPRRIRLPSPPLPSLPRPGGGEGRRRRCSWREG 89



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>AK071346:Os06g0114900 |
          Length = 102

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
 Frame = -1

Query: 264 RSGGRGEASGKMG---NKGAAAWERMELGGEKETSGNGDHAM 148
           R+G    A+G MG   + G   WE  E   E+E  GNGD  M
Sbjct: 41  RAGAVATAAGSMGRCCHAGEKKWEEKEKEKEEEEEGNGDGRM 82



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>AK121480:Os12g0547100 |
          Length = 117

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +2

Query: 299 RSTQCRGGDASRPPHPYAALMAPHVPDLERDGRGYKHRRNGPWRCGRRPR 448
           RS +   G   RPP P ++ + P        GRG++ +R+GP  C  R R
Sbjct: 60  RSARRGTGGGRRPPFPLSSQIRPV-------GRGHRRQRHGPPLCSSRGR 102



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>AK105589:Os12g0547100 |
          Length = 117

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +2

Query: 299 RSTQCRGGDASRPPHPYAALMAPHVPDLERDGRGYKHRRNGPWRCGRRPR 448
           RS +   G   RPP P ++ + P        GRG++ +R+GP  C  R R
Sbjct: 60  RSARRGTGGGRRPPFPLSSQIRPV-------GRGHRRQRHGPPLCSSRGR 102



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>AK108761:Os08g0168000 |
          Length = 323

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +2

Query: 872  ALFLVSSYVSERYIYYLKAMMRFFHSVSCSNSFLFLFFQKQAMMFG-HNLYTVKSHL 1039
            A  L+  Y+ + Y+YYLK    F  ++  + S+  L+F++     G H   T++ ++
Sbjct: 186  ATVLLPKYMKDFYLYYLKTFDSFEEALGPNKSYRVLYFKELREQAGDHYASTIQCYM 242


  Database: orf_amino.fa.out
    Posted date:  Jul 26, 2007 11:37 AM
  Number of letters in database: 15,399,855
  Number of sequences in database:  40,041
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 40041
Number of Hits to DB: 51,632,625
Number of extensions: 1179357
Number of successful extensions: 3533
Number of sequences better than 10.0: 6
Number of HSP's gapped: 3526
Number of HSP's successfully gapped: 6
Length of query: 654
Length of database: 15,399,855
Length adjustment: 107
Effective length of query: 547
Effective length of database: 11,115,468
Effective search space: 6080160996
Effective search space used: 6080160996
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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