ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf93j03 |
|---|---|
| Clone Library Name | barley_pub |
>Q5FVR7:CPSF4_RAT Cleavage and polyadenylation specificity factor subunit 4 - Rattus| norvegicus (Rat) Length = 243 Score = 40.8 bits (94), Expect = 0.019 Identities = 14/17 (82%), Positives = 17/17 (100%) Frame = +1 Query: 1252 VTCHKCGQKGHYANKCT 1302 VTC+KCG+KGHYAN+CT Sbjct: 217 VTCYKCGEKGHYANRCT 233
>Q8BQZ5:CPSF4_MOUSE Cleavage and polyadenylation specificity factor subunit 4 - Mus| musculus (Mouse) Length = 211 Score = 40.8 bits (94), Expect = 0.019 Identities = 14/17 (82%), Positives = 17/17 (100%) Frame = +1 Query: 1252 VTCHKCGQKGHYANKCT 1302 VTC+KCG+KGHYAN+CT Sbjct: 185 VTCYKCGEKGHYANRCT 201
>O95639:CPSF4_HUMAN Cleavage and polyadenylation specificity factor subunit 4 - Homo| sapiens (Human) Length = 269 Score = 40.8 bits (94), Expect = 0.019 Identities = 14/17 (82%), Positives = 17/17 (100%) Frame = +1 Query: 1252 VTCHKCGQKGHYANKCT 1302 VTC+KCG+KGHYAN+CT Sbjct: 243 VTCYKCGEKGHYANRCT 259
>O19137:CPSF4_BOVIN Cleavage and polyadenylation specificity factor subunit 4 - Bos| taurus (Bovine) Length = 243 Score = 40.8 bits (94), Expect = 0.019 Identities = 14/17 (82%), Positives = 17/17 (100%) Frame = +1 Query: 1252 VTCHKCGQKGHYANKCT 1302 VTC+KCG+KGHYAN+CT Sbjct: 217 VTCYKCGEKGHYANRCT 233
>O93215:POL_HV190 Gag-Pol polyprotein - Human immunodeficiency virus type 1 (isolate| 90CF056 group M subtype H) (HIV-1) Length = 1435 Score = 35.0 bits (79), Expect = 1.0 Identities = 19/66 (28%), Positives = 25/66 (37%) Frame = +1 Query: 1210 KQGPPQIQFRQPADVTCHKCGQKGHYANKCTSQLRLXXXXXXXXXSNALVKFNPRSARVN 1389 K+G R P C KCG++GH CT + KF+P AR N Sbjct: 398 KEGHIARNCRAPRKKGCWKCGREGHQMKDCTERQAKFFRENLAFQQREARKFSPEQARTN 457 Query: 1390 MVNAAE 1407 + E Sbjct: 458 SPTSRE 463
>P83006:PAFA2_RAT Platelet-activating factor acetylhydrolase 2, cytoplasmic - Rattus| norvegicus (Rat) Length = 390 Score = 34.7 bits (78), Expect = 1.3 Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 6/70 (8%) Frame = +1 Query: 736 FCRDFRSHYIPSSFVEEMREKFRRLKQGSNSVYKYNVEFHELAR------YALQDVPDQK 897 FC+ P+ +EE FRR+K+G + N + H+ A+ LQD K Sbjct: 145 FCKQTSQESSPTESLEEEWIPFRRIKEGEKEFHVRNPQVHQRAKECVRVLQILQDASAGK 204 Query: 898 SKIYQFRGGL 927 I F GGL Sbjct: 205 PVINVFPGGL 214
>Q9Q720:POL_HV1V9 Gag-Pol polyprotein - Human immunodeficiency virus type 1 (isolate| VI991 group M subtype H) (HIV-1) Length = 1436 Score = 33.5 bits (75), Expect = 3.0 Identities = 19/66 (28%), Positives = 24/66 (36%) Frame = +1 Query: 1210 KQGPPQIQFRQPADVTCHKCGQKGHYANKCTSQLRLXXXXXXXXXSNALVKFNPRSARVN 1389 K+G R P C KCGQ+GH CT + +F P AR N Sbjct: 400 KEGHIARNCRAPRKKGCWKCGQEGHQMKDCTGRQANFFRENLAFQQGKAREFPPEEARAN 459 Query: 1390 MVNAAE 1407 + E Sbjct: 460 SPTSRE 465
>Q5BFH3:XRN2_EMENI 5'-3' exoribonuclease 2 - Emericella nidulans (Aspergillus nidulans)| Length = 1032 Score = 33.1 bits (74), Expect = 3.9 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = +1 Query: 1234 FRQPADVTCHKCGQKGHYANKCTSQLR 1314 F++ TCH CGQ GH A +C Q + Sbjct: 261 FQESKQRTCHLCGQPGHKAEECRGQAK 287
>Q8TFZ1:XRN2_ASPFU 5'-3' exoribonuclease 2 - Aspergillus fumigatus (Sartorya fumigata)| Length = 1058 Score = 33.1 bits (74), Expect = 3.9 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = +1 Query: 1234 FRQPADVTCHKCGQKGHYANKCTSQLR 1314 F++ TCH CGQ+GH A +C Q + Sbjct: 262 FQESRARTCHLCGQQGHKAEECRGQAK 288
>Q8VDG7:PAFA2_MOUSE Platelet-activating factor acetylhydrolase 2, cytoplasmic - Mus| musculus (Mouse) Length = 390 Score = 33.1 bits (74), Expect = 3.9 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 6/70 (8%) Frame = +1 Query: 736 FCRDFRSHYIPSSFVEEMREKFRRLKQGSNSVYKYNVEFHELARYA------LQDVPDQK 897 FC+ P+ +EE FRR+K+G + N + H+ + LQD K Sbjct: 145 FCKPTSQESSPAESLEEEWLPFRRIKEGEKEFHVRNPQVHQRVKECVRVLRILQDASAGK 204 Query: 898 SKIYQFRGGL 927 + + F GGL Sbjct: 205 TVVNVFPGGL 214
>P27972:GAG_SIVV1 Gag polyprotein [Contains: Core protein p17; Core protein p24; Core| protein p15] - Simian immunodeficiency virus agm.vervet (isolate AGM155) (SIV-agm.ver) (Simian immunodeficiency virus African green monkey vervet) Length = 520 Score = 33.1 bits (74), Expect = 3.9 Identities = 15/38 (39%), Positives = 19/38 (50%) Frame = +1 Query: 1198 YQHQKQGPPQIQFRQPADVTCHKCGQKGHYANKCTSQL 1311 Y K G Q Q +P + C KCG+ GH A C Q+ Sbjct: 401 YNCGKFGHMQRQCPEPRKIKCLKCGKPGHLAKDCRGQV 438
>P62634:CNBP_RAT Cellular nucleic acid-binding protein - Rattus norvegicus (Rat)| Length = 177 Score = 33.1 bits (74), Expect = 3.9 Identities = 12/35 (34%), Positives = 21/35 (60%) Frame = +1 Query: 1198 YQHQKQGPPQIQFRQPADVTCHKCGQKGHYANKCT 1302 Y+ + G I + ++V C++CG+ GH A +CT Sbjct: 138 YRCGETGHVAINCSKTSEVNCYRCGESGHLARECT 172
>Q5R5R5:CNBP_PONPY Cellular nucleic acid-binding protein - Pongo pygmaeus (Orangutan)| Length = 177 Score = 33.1 bits (74), Expect = 3.9 Identities = 12/35 (34%), Positives = 21/35 (60%) Frame = +1 Query: 1198 YQHQKQGPPQIQFRQPADVTCHKCGQKGHYANKCT 1302 Y+ + G I + ++V C++CG+ GH A +CT Sbjct: 138 YRCGETGHVAINCSKTSEVNCYRCGESGHLARECT 172
>P53996:CNBP_MOUSE Cellular nucleic acid-binding protein - Mus musculus (Mouse)| Length = 178 Score = 33.1 bits (74), Expect = 3.9 Identities = 12/35 (34%), Positives = 21/35 (60%) Frame = +1 Query: 1198 YQHQKQGPPQIQFRQPADVTCHKCGQKGHYANKCT 1302 Y+ + G I + ++V C++CG+ GH A +CT Sbjct: 139 YRCGETGHVAINCSKTSEVNCYRCGESGHLARECT 173
>P62633:CNBP_HUMAN Cellular nucleic acid-binding protein - Homo sapiens (Human)| Length = 177 Score = 33.1 bits (74), Expect = 3.9 Identities = 12/35 (34%), Positives = 21/35 (60%) Frame = +1 Query: 1198 YQHQKQGPPQIQFRQPADVTCHKCGQKGHYANKCT 1302 Y+ + G I + ++V C++CG+ GH A +CT Sbjct: 138 YRCGETGHVAINCSKTSEVNCYRCGESGHLARECT 172
>O42395:CNBP_CHICK Cellular nucleic acid-binding protein - Gallus gallus (Chicken)| Length = 172 Score = 33.1 bits (74), Expect = 3.9 Identities = 12/35 (34%), Positives = 21/35 (60%) Frame = +1 Query: 1198 YQHQKQGPPQIQFRQPADVTCHKCGQKGHYANKCT 1302 Y+ + G I + ++V C++CG+ GH A +CT Sbjct: 133 YRCGETGHVAINCSKTSEVNCYRCGESGHLARECT 167
>Q3T0Q6:CNBP_BOVIN Cellular nucleic acid-binding protein - Bos taurus (Bovine)| Length = 170 Score = 33.1 bits (74), Expect = 3.9 Identities = 12/35 (34%), Positives = 21/35 (60%) Frame = +1 Query: 1198 YQHQKQGPPQIQFRQPADVTCHKCGQKGHYANKCT 1302 Y+ + G I + ++V C++CG+ GH A +CT Sbjct: 131 YRCGETGHVAINCSKTSEVNCYRCGESGHLARECT 165
>P22106:ASNB_ECOLI Asparagine synthetase B [glutamine-hydrolyzing] - Escherichia coli| Length = 554 Score = 33.1 bits (74), Expect = 3.9 Identities = 20/83 (24%), Positives = 34/83 (40%) Frame = +1 Query: 613 CSNVRPEDYVKFATFQLKGQASIWWQQLKDSRGGRVMSWDEFCRDFRSHYIPSSFVEEMR 792 C N + E ++ F+ AS+ W+Q + G SW + ++ + + +E R Sbjct: 423 CGNGKMEKHILRECFEAYLPASVAWRQKEQFSDGVGYSWIDTLKEVAAQQVSDQQLETAR 482 Query: 793 EKFRRLKQGSNSVYKYNVEFHEL 861 +F S Y Y F EL Sbjct: 483 FRFPYNTPTSKEAYLYREIFEEL 505
>Q9WC63:POL_HV1S9 Gag-Pol polyprotein - Human immunodeficiency virus type 1 (isolate| SE9173 group M subtype J) (HIV-1) Length = 1432 Score = 32.7 bits (73), Expect = 5.1 Identities = 18/66 (27%), Positives = 24/66 (36%) Frame = +1 Query: 1210 KQGPPQIQFRQPADVTCHKCGQKGHYANKCTSQLRLXXXXXXXXXSNALVKFNPRSARVN 1389 KQG R P C KCG++GH CT + +F+P R N Sbjct: 396 KQGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFFREDLAFQQREAREFSPEQTRAN 455 Query: 1390 MVNAAE 1407 + E Sbjct: 456 SPTSRE 461
>Q08402:GP44_BPSP1 E3 protein - Bacteriophage SP01| Length = 237 Score = 32.7 bits (73), Expect = 5.1 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 2/59 (3%) Frame = +1 Query: 1480 ETEYVESGEYVQDDPEPFQAEDITAGTGTPEAED--PDGTQLAWQYDEETDRLYVNYPE 1650 E + +E E V+D+ E AED+ T ++ED +G +A + +E+ D + YPE Sbjct: 66 EEDILEGVEVVEDEEEEEAAEDVEEPTSEEDSEDEWEEGYPVATEVEEDEDE-EIEYPE 123
>Q2UCP5:XRN2_ASPOR 5'-3' exoribonuclease 2 - Aspergillus oryzae| Length = 1035 Score = 32.3 bits (72), Expect = 6.7 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = +1 Query: 1234 FRQPADVTCHKCGQKGHYANKCTSQLR 1314 F++ TCH CGQ GH A +C Q + Sbjct: 260 FQESKARTCHLCGQAGHKAEECRGQAK 286
>P27484:GRP2_NICSY Glycine-rich protein 2 - Nicotiana sylvestris (Wood tobacco)| Length = 214 Score = 32.3 bits (72), Expect = 6.7 Identities = 10/16 (62%), Positives = 14/16 (87%) Frame = +1 Query: 1258 CHKCGQKGHYANKCTS 1305 C+KCG+ GH+A +CTS Sbjct: 196 CYKCGEDGHFARECTS 211
>P27978:GAG_SIVVG Gag polyprotein [Contains: Core protein p17; Core protein p24; Core| protein p15] - Simian immunodeficiency virus agm.vervet (isolate AGM3) (SIV-agm.ver) (Simian immunodeficiency virus African green monkey vervet) Length = 521 Score = 32.3 bits (72), Expect = 6.7 Identities = 15/38 (39%), Positives = 19/38 (50%) Frame = +1 Query: 1198 YQHQKQGPPQIQFRQPADVTCHKCGQKGHYANKCTSQL 1311 Y K G Q Q +P + C KCG+ GH A C Q+ Sbjct: 405 YNCGKFGHMQRQCPEPRKMRCLKCGKPGHLAKDCRGQV 442
>O95644:NFAC1_HUMAN Nuclear factor of activated T-cells, cytoplasmic 1 - Homo sapiens| (Human) Length = 943 Score = 32.0 bits (71), Expect = 8.7 Identities = 21/54 (38%), Positives = 27/54 (50%) Frame = -3 Query: 976 QTPPDRAKRVLTANPPSSHP*TGISYSSDPEHPATRNGPARETQHCTCTQNCCP 815 Q PP + ++A P SS P G+ +S P P+ PA TQ TC Q C P Sbjct: 816 QPPPALLPQQVSAPPSSSCP-PGLEHSLCPSSPSPPLPPA--TQEPTCLQPCSP 866
>Q8N3Z6:ZCHC7_HUMAN Zinc finger CCHC domain-containing protein 7 - Homo sapiens (Human)| Length = 542 Score = 32.0 bits (71), Expect = 8.7 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%) Frame = +1 Query: 1186 FQQRYQHQKQGPPQ---IQFRQPADVTCHKCGQKGHYANKC 1299 ++Q + K GPP+ R A C+ C QKGHY ++C Sbjct: 322 WRQYHLTTKPGPPKKPKTPSRPSALAYCYHCAQKGHYGHEC 362
>Q7Z6E9:RBBP6_HUMAN Retinoblastoma-binding protein 6 - Homo sapiens (Human)| Length = 1792 Score = 32.0 bits (71), Expect = 8.7 Identities = 13/34 (38%), Positives = 16/34 (47%) Frame = +1 Query: 1198 YQHQKQGPPQIQFRQPADVTCHKCGQKGHYANKC 1299 Y + GPP P TC +CG+ GHY C Sbjct: 147 YMKKPLGPP------PPSYTCFRCGKPGHYIKNC 174
>P24107:POL_HV2CA Gag-Pol polyprotein - Human immunodeficiency virus type 2 (isolate| CAM2 subtype A) (HIV-2) Length = 1462 Score = 32.0 bits (71), Expect = 8.7 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 3/39 (7%) Frame = +1 Query: 1207 QKQGPPQIQF---RQPADVTCHKCGQKGHYANKCTSQLR 1314 + GPP I F +Q + C CG++GH A +C + R Sbjct: 371 EAMGPPPIPFAAAQQRRTIKCWNCGKEGHSARQCRAPRR 409
>P19199:POL_COYMV Putative polyprotein [Contains: Coat protein; Protease - Commelina| yellow mottle virus (CoYMV) Length = 1886 Score = 32.0 bits (71), Expect = 8.7 Identities = 10/17 (58%), Positives = 15/17 (88%) Frame = +1 Query: 1258 CHKCGQKGHYANKCTSQ 1308 C+ CGQ+GHYAN+C ++ Sbjct: 881 CYICGQEGHYANQCRNK 897
>P24106:GAG_HV2CA Gag polyprotein - Human immunodeficiency virus type 2 (isolate CAM2| subtype A) (HIV-2) Length = 521 Score = 32.0 bits (71), Expect = 8.7 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 3/39 (7%) Frame = +1 Query: 1207 QKQGPPQIQF---RQPADVTCHKCGQKGHYANKCTSQLR 1314 + GPP I F +Q + C CG++GH A +C + R Sbjct: 371 EAMGPPPIPFAAAQQRRTIKCWNCGKEGHSARQCRAPRR 409 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 262,505,952 Number of extensions: 5057672 Number of successful extensions: 14212 Number of sequences better than 10.0: 29 Number of HSP's gapped: 14190 Number of HSP's successfully gapped: 29 Length of query: 600 Length of database: 100,686,439 Length adjustment: 119 Effective length of query: 481 Effective length of database: 68,045,334 Effective search space: 32729805654 Effective search space used: 32729805654 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
