ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf93i11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q8R1B0:STAC2_MOUSE SH3 and cysteine-rich domain-containing prote... 34 1.8
2Q9Y6X9:MORC2_HUMAN MORC family CW-type zinc finger protein 2 - H... 32 7.0

>Q8R1B0:STAC2_MOUSE SH3 and cysteine-rich domain-containing protein 2 - Mus musculus|
           (Mouse)
          Length = 408
 Score = 33.9 bits (76), Expect = 1.8
 Identities = 27/90 (30%), Positives = 35/90 (38%)
 Frame = +1

Query: 4   EVLRSPPKPVAVASMPV*GIAARRRSLPTPAPATAVRHRPLLLT*ACARRRSSPLVLVHI 183
           EVL +PP P+   S P    A+  R LPTP P+     RPL                   
Sbjct: 65  EVLLTPPTPLPPPSPPP---ASTDRGLPTPTPSPCPVPRPL------------------- 102

Query: 184 CTSRRSLPVMPASNRSSPAHVR*RSSPCDM 273
                  P+ P    S   HV  R+SPC++
Sbjct: 103 ------APLKPVRLHSFQEHVFKRASPCEL 126



to top

>Q9Y6X9:MORC2_HUMAN MORC family CW-type zinc finger protein 2 - Homo sapiens (Human)|
          Length = 1032

 Score = 32.0 bits (71), Expect = 7.0
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +1

Query: 13  RSPPKPVAVASMPV*GIAARRRSLPTPAPATAVRHRPLL 129
           RSPP P  + + P     +R  SLPTP PA+  R  P++
Sbjct: 614 RSPPLPAVIRNAP-----SRPPSLPTPRPASQPRKAPVI 647


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 242,529,537
Number of extensions: 5081820
Number of successful extensions: 11885
Number of sequences better than 10.0: 2
Number of HSP's gapped: 11863
Number of HSP's successfully gapped: 2
Length of query: 501
Length of database: 100,686,439
Length adjustment: 117
Effective length of query: 384
Effective length of database: 68,593,924
Effective search space: 26340066816
Effective search space used: 26340066816
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top