ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf87o20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AK065720:Os03g0439700 403 e-112
2AK073867:Os05g0539900 92 5e-19
3AK102510:Os09g0322000 31 1.4
4AK067346:Os09g0322000 31 1.4
5AK063975:Os09g0322000 31 1.4
6AK107047:Os02g0265100 29 5.3
7AK066045:Os07g0476900 29 6.9
8AY271618:Os01g0609300 28 9.0
9AK100135:Os01g0609300 28 9.0

>AK065720:Os03g0439700 |
          Length = 312
 Score =  403 bits (1036), Expect = e-112
 Identities = 219/316 (69%), Positives = 230/316 (72%)
 Frame = +1

Query: 46  MLLRLKITTVQPVALLLGHDHGGTASPRQFAGAFPQGGRASTRTKRLRGVAVAMALKEEE 225
           MLLRLK   V P ALL G      A   Q  G        + R      V V MALKEE 
Sbjct: 1   MLLRLKAVAVHPAALL-GRPRSHDAP--QLVGRTGASTTTARRRAARSAVTVTMALKEE- 56

Query: 226 PESSRSRFAGGGLSWDPRMEIGVPYEQRPVNEYSALKESTLYSWAELSPGSFFMRLGSLC 405
           PE SRS FAGG  SWDP +EI VP+EQRPVNEYSALK+S LYSWAELSPGSFF+RLGSL 
Sbjct: 57  PEGSRSGFAGGVPSWDPGLEIQVPFEQRPVNEYSALKDSVLYSWAELSPGSFFLRLGSLW 116

Query: 406 LVTFTVLAAPISAASFSPGKDPLKFVLAAGIGTLLLVSLVVLRIYLGWSYVGDRLLSAVV 585
           L+TFTVLAAPI+AASFSPGKDPLKFVLAAGIGTLLLVSLVVLRIYLGWSYVGDRLLSAVV
Sbjct: 117 LITFTVLAAPIAAASFSPGKDPLKFVLAAGIGTLLLVSLVVLRIYLGWSYVGDRLLSAVV 176

Query: 586 PYEETGWYDGQMWVKPAEVLARDRLLGSYKVKPVINLLKQXXXXXXXXXXXXXXXXXXXX 765
           PYEETGWYDGQMWVKP EVLARDRLLGSYKVKPVINLLKQ                    
Sbjct: 177 PYEETGWYDGQMWVKPPEVLARDRLLGSYKVKPVINLLKQTLVGTGALLVGAVSLFAFAA 236

Query: 766 XXXXXXHSFNGAPSTASSKPIMRREELLKLPAEVRQDDDLXXXXXXXXNGRPVYCRDRYY 945
                 HS N  PS ASSKP +RREELL+LP EVRQDDDL        +GRPVYCRDRYY
Sbjct: 237 PVEDFLHSVNAPPSAASSKPSLRREELLRLPVEVRQDDDLAAAAAEAADGRPVYCRDRYY 296

Query: 946 RALAGGQYCTSDDLLD 993
           RALAGGQYC  DDLL+
Sbjct: 297 RALAGGQYCKWDDLLN 312



to top

>AK073867:Os05g0539900 |
          Length = 176

 Score = 92.4 bits (228), Expect = 5e-19
 Identities = 55/131 (41%), Positives = 70/131 (53%), Gaps = 2/131 (1%)
 Frame = +1

Query: 235 SRSRFAGGGLSWDPRMEIGVPYEQRPVNEYSALKESTLYSWA--ELSPGSFFMRLGSLCL 408
           SR+  +  G  W P     VP EQ PVNEY +L  S  +SWA  +L+     + L     
Sbjct: 47  SRNGSSSQGTEWCP-----VPPEQLPVNEYESLAASLPFSWAAGDLTVYCSRLALTGAAF 101

Query: 409 VTFTVLAAPISAASFSPGKDPLKFVLAAGIGTLLLVSLVVLRIYLGWSYVGDRLLSAVVP 588
             F  L           G D +   L A    +L V+L V+R+YLGW+YVG+RLLSA V 
Sbjct: 102 ALFVGLPVASFGGRGGAGGDAVHLALGATGSGILAVTLAVVRMYLGWAYVGNRLLSATVE 161

Query: 589 YEETGWYDGQM 621
           YEETGWYDGQ+
Sbjct: 162 YEETGWYDGQV 172



to top

>AK102510:Os09g0322000 |
          Length = 350

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 15/50 (30%), Positives = 30/50 (60%)
 Frame = +1

Query: 406 LVTFTVLAAPISAASFSPGKDPLKFVLAAGIGTLLLVSLVVLRIYLGWSY 555
           +++  V+ A I A  F  G++     L+ G+GT+L+V++ +  +  GWS+
Sbjct: 183 MISSMVVVAVILALKFGHGEE-----LSKGVGTVLVVAICLFVVAYGWSW 227



to top

>AK067346:Os09g0322000 |
          Length = 530

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 15/50 (30%), Positives = 30/50 (60%)
 Frame = +1

Query: 406 LVTFTVLAAPISAASFSPGKDPLKFVLAAGIGTLLLVSLVVLRIYLGWSY 555
           +++  V+ A I A  F  G++     L+ G+GT+L+V++ +  +  GWS+
Sbjct: 363 MISSMVVVAVILALKFGHGEE-----LSKGVGTVLVVAICLFVVAYGWSW 407



to top

>AK063975:Os09g0322000 |
          Length = 412

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 15/50 (30%), Positives = 30/50 (60%)
 Frame = +1

Query: 406 LVTFTVLAAPISAASFSPGKDPLKFVLAAGIGTLLLVSLVVLRIYLGWSY 555
           +++  V+ A I A  F  G++     L+ G+GT+L+V++ +  +  GWS+
Sbjct: 245 MISSMVVVAVILALKFGHGEE-----LSKGVGTVLVVAICLFVVAYGWSW 289



to top

>AK107047:Os02g0265100 |
          Length = 97

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 23/72 (31%), Positives = 30/72 (41%)
 Frame = +3

Query: 348 VFVGRAQSRLLLHAPRQPVPGHIYSSGGPNLSRKFQSRKGSAQVCAGCWDWDPAPRISCG 527
           V+ GRA    L H  R+P P    ++G     R+ + RKG+      C  W    R SCG
Sbjct: 34  VWSGRAPPPRLHHPRRRPPPPTAAAAGAARRRRRRRRRKGA------CCGW--CRRASCG 85

Query: 528 SQDLPGLELRWR 563
                G   R R
Sbjct: 86  GWAPSGCARRCR 97



to top

>AK066045:Os07g0476900 |
          Length = 301

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 9/57 (15%)
 Frame = +1

Query: 118 ASPRQFAGAFPQGGRASTRTK-------RLRGVAVAMALK--EEEPESSRSRFAGGG 261
           A      GA P  G  S R+K       R RG AV  A+   E+ PE+++ +  GGG
Sbjct: 12  AGSTSLGGATPASGGGSGRSKTARFLRRRRRGGAVRAAVSGTEQAPETTKKKGGGGG 68



to top

>AY271618:Os01g0609300 |
          Length = 1457

 Score = 28.5 bits (62), Expect = 9.0
 Identities = 50/214 (23%), Positives = 82/214 (38%), Gaps = 12/214 (5%)
 Frame = +1

Query: 100 HDHGGTASPRQFAGAFPQGGRASTRTKRLRGVAVAMALKEEEPESSRSRFAGGGLSW--D 273
           HD  G   PR+        G   T       +A+A  L ++   S +  + G G+     
Sbjct: 181 HDVSGIIKPRRMTLLLGPPGSGKTTLL----LALAGRLGKDLKASGKVTYNGHGMEEFVP 236

Query: 274 PRMEIGVPYEQRPVNEYSALKESTLYSWAELSPGSFFMRLGSLCLVTFTVLAAPISAASF 453
            R    +      + E + ++E+  +S      GS F  L        T L+    AA+ 
Sbjct: 237 ERTAAYISQHDLHIGEMT-VRETLAFSARCQGVGSRFDML--------TELSRREKAANI 287

Query: 454 SPGKDPLKFVLAAGIG-------TLLLVSLVVLRIYLGWSYVGDRLLSAVVPYEETGWYD 612
            P  D   F+ AA +G       T  ++ ++ L I    + VGD +L  +   +      
Sbjct: 288 KPDADIDAFMKAAAMGGQEANVNTDYILKILGLEICAD-TMVGDEMLRGISGGQRKRVTT 346

Query: 613 GQMWVKPAEVLARDRL---LGSYKVKPVINLLKQ 705
           G+M V PA  L  D +   L S     ++N L+Q
Sbjct: 347 GEMLVGPARALFMDEISTGLDSSTTFQIVNSLRQ 380



to top

>AK100135:Os01g0609300 |
          Length = 1293

 Score = 28.5 bits (62), Expect = 9.0
 Identities = 50/214 (23%), Positives = 82/214 (38%), Gaps = 12/214 (5%)
 Frame = +1

Query: 100 HDHGGTASPRQFAGAFPQGGRASTRTKRLRGVAVAMALKEEEPESSRSRFAGGGLSW--D 273
           HD  G   PR+        G   T       +A+A  L ++   S +  + G G+     
Sbjct: 17  HDVSGIIKPRRMTLLLGPPGSGKTTLL----LALAGRLGKDLKASGKVTYNGHGMEEFVP 72

Query: 274 PRMEIGVPYEQRPVNEYSALKESTLYSWAELSPGSFFMRLGSLCLVTFTVLAAPISAASF 453
            R    +      + E + ++E+  +S      GS F  L        T L+    AA+ 
Sbjct: 73  ERTAAYISQHDLHIGEMT-VRETLAFSARCQGVGSRFDML--------TELSRREKAANI 123

Query: 454 SPGKDPLKFVLAAGIG-------TLLLVSLVVLRIYLGWSYVGDRLLSAVVPYEETGWYD 612
            P  D   F+ AA +G       T  ++ ++ L I    + VGD +L  +   +      
Sbjct: 124 KPDADIDAFMKAAAMGGQEANVNTDYILKILGLEICAD-TMVGDEMLRGISGGQRKRVTT 182

Query: 613 GQMWVKPAEVLARDRL---LGSYKVKPVINLLKQ 705
           G+M V PA  L  D +   L S     ++N L+Q
Sbjct: 183 GEMLVGPARALFMDEISTGLDSSTTFQIVNSLRQ 216


  Database: orf_amino.fa.out
    Posted date:  Jul 26, 2007 11:37 AM
  Number of letters in database: 15,399,855
  Number of sequences in database:  40,041
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 40041
Number of Hits to DB: 30,596,483
Number of extensions: 716579
Number of successful extensions: 2509
Number of sequences better than 10.0: 9
Number of HSP's gapped: 2506
Number of HSP's successfully gapped: 9
Length of query: 372
Length of database: 15,399,855
Length adjustment: 102
Effective length of query: 270
Effective length of database: 11,315,673
Effective search space: 3055231710
Effective search space used: 3055231710
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top