ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf93h12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1O65416:FB240_ARATH F-box protein At4g21510 - Arabidopsis thalian... 75 4e-13
2Q9S9T6:FB220_ARATH Putative F-box protein At4g05010 - Arabidopsi... 60 2e-08
3Q5XF11:FB248_ARATH F-box protein At4g35930 - Arabidopsis thalian... 53 2e-06
4Q9SN20:FB200_ARATH Putative F-box protein At3g49980 - Arabidopsi... 33 1.7
5Q91V45:KISSR_MOUSE KiSS-1 receptor - Mus musculus (Mouse) 32 5.0

>O65416:FB240_ARATH F-box protein At4g21510 - Arabidopsis thaliana (Mouse-ear cress)|
          Length = 225
 Score = 75.5 bits (184), Expect = 4e-13
 Identities = 59/159 (37%), Positives = 81/159 (50%), Gaps = 29/159 (18%)
 Frame = +3

Query: 306 TRILGRKRVAVXXXXXXXXXXXXVR------------TLRKQRS---IRFHMDDTICLLE 440
           TR LGRKR+ +            V             +L++QRS   I          LE
Sbjct: 66  TRGLGRKRILISSCVRESLSRSAVEIPVVSESPPVKSSLKRQRSRITIVSSSSSEKSRLE 125

Query: 441 SLPQDVLVKVLCKVNHSDLRQLLLVSKPVSEATVVAKELHFAFATPSKA-----SADGEE 605
            LPQD+L++V+C V+H DL+ L LVSK + EA++VAK LHFA+ TP K      S D EE
Sbjct: 126 CLPQDLLIRVICGVDHEDLKSLKLVSKSIREASLVAKTLHFAYTTPKKTRAFRNSIDLEE 185

Query: 606 -------EDD--GPGAPKQHRVARSRCRGVNLASVAVNL 695
                  EDD   P AP+ +R  +++ R   L+SV+  L
Sbjct: 186 VSDSRHQEDDIEPPNAPRHYRWTKAK-RKEQLSSVSAAL 223



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>Q9S9T6:FB220_ARATH Putative F-box protein At4g05010 - Arabidopsis thaliana (Mouse-ear|
           cress)
          Length = 164

 Score = 59.7 bits (143), Expect = 2e-08
 Identities = 40/127 (31%), Positives = 60/127 (47%), Gaps = 15/127 (11%)
 Frame = +3

Query: 306 TRILGRKRVAVXXXXXXXXXXXXVRTLRKQRSIRFHMDDTICLLESLPQDVLVKVLCKVN 485
           TR LGRKR+ +             R   +        +    LLE+L QD+L++VLC V+
Sbjct: 27  TRGLGRKRILISKRAPENDSPPVKRPSHETT------ESCRSLLETLHQDILIRVLCHVD 80

Query: 486 HSDLRQLLLVSKPVSEATVVAKELHFAFATPSKA---------------SADGEEEDDGP 620
           H DL  L  VSK + +A + AK+ HF ++TP K                S+  ++E + P
Sbjct: 81  HEDLATLKRVSKTIRKAVIEAKKSHFDYSTPKKRLPFRDAILILDSNSNSSSQDDEMEPP 140

Query: 621 GAPKQHR 641
            AP + R
Sbjct: 141 NAPIRRR 147



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>Q5XF11:FB248_ARATH F-box protein At4g35930 - Arabidopsis thaliana (Mouse-ear cress)|
          Length = 321

 Score = 53.1 bits (126), Expect = 2e-06
 Identities = 21/51 (41%), Positives = 37/51 (72%)
 Frame = +3

Query: 435 LESLPQDVLVKVLCKVNHSDLRQLLLVSKPVSEATVVAKELHFAFATPSKA 587
           LESLP D+LVK++C ++H  L+ +  VS+ +  AT++A++ HF + TP ++
Sbjct: 162 LESLPMDLLVKIVCHLHHDQLKAVFHVSQRIRMATILARQYHFNYTTPDRS 212



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>Q9SN20:FB200_ARATH Putative F-box protein At3g49980 - Arabidopsis thaliana (Mouse-ear|
           cress)
          Length = 382

 Score = 33.5 bits (75), Expect = 1.7
 Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
 Frame = +3

Query: 441 SLPQDVLVKVLCKVNHSDLRQLLLVSKPVSEATVVAKELHFAFATPSKASADGEEEDDGP 620
           +LPQ++L ++LC+V  + L+QL L  K  +          F   T S+   D        
Sbjct: 4   NLPQELLEEILCRVPATSLKQLRLTCKEWNRL--------FNDRTFSRKHFD-------- 47

Query: 621 GAPKQH--RVARSRCRGVNLASVAVNLSASFSS 713
            APKQ    V   RCR   L+S+++NL + F S
Sbjct: 48  KAPKQFLITVLEERCR---LSSLSINLHSGFPS 77



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>Q91V45:KISSR_MOUSE KiSS-1 receptor - Mus musculus (Mouse)|
          Length = 396

 Score = 32.0 bits (71), Expect = 5.0
 Identities = 20/54 (37%), Positives = 27/54 (50%)
 Frame = +2

Query: 377 AHSAQAAQH*VPHGRHHLPSRIAASRCLGQSPVQGEPQRPEAAPPCVEASQRSN 538
           AHS +AA H VPH R   P RI       +SP   EP  P    PC ++ + ++
Sbjct: 352 AHSDRAATHTVPHSRAAHPVRI-------RSP---EPGNPVVRSPCAQSERTAS 395


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 186,564,350
Number of extensions: 3834245
Number of successful extensions: 10530
Number of sequences better than 10.0: 5
Number of HSP's gapped: 10522
Number of HSP's successfully gapped: 5
Length of query: 386
Length of database: 100,686,439
Length adjustment: 115
Effective length of query: 271
Effective length of database: 69,142,514
Effective search space: 18737621294
Effective search space used: 18737621294
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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