ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf90d11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LOC_Os08g44480:12008.t04172:unspliced-genomic 40S ribosomal ... 81 4e-33
2LOC_Os09g39540:12009.t03419:unspliced-genomic 40S ribosomal ... 82 1e-32
3LOC_Os11g05562:12011.t04340:unspliced-genomic 40S ribosomal ... 79 4e-27
4LOC_Os10g35580:12010.t02854:unspliced-genomic microtubule-as... 39 0.027
5LOC_Os02g14980:12002.t01291:unspliced-genomic sodium/calcium... 34 0.44
6LOC_Os08g35860:12008.t03326:unspliced-genomic cytokinin dehy... 31 1.1
7LOC_Os06g17520:12006.t01624:unspliced-genomic retrotransposo... 34 1.2
8LOC_Os01g49740:12001.t04413:unspliced-genomic vesicular tran... 34 1.2
9LOC_Os02g45100:12002.t04100:unspliced-genomic mitochondrial ... 28 1.7
10LOC_Os12g24160:12012.t02145:unspliced-genomic retrotransposo... 33 2.3
11LOC_Os05g07810:12005.t00661:unspliced-genomic USP family pro... 33 2.3
12LOC_Os08g02000:12008.t00099:unspliced-genomic retrotransposo... 33 2.3
13LOC_Os01g63580:12001.t05727:unspliced-genomic glycerol-3-pho... 32 3.1
14LOC_Os11g03520:12011.t00243:unspliced-genomic acyltransferas... 27 3.2
15LOC_Os01g26756:12001.t02355:unspliced-genomic retrotransposo... 32 4.3
16LOC_Os02g17680:12002.t01561:unspliced-genomic helix-loop-hel... 32 4.3
17LOC_Os04g52590:12004.t04733:unspliced-genomic protein kinase... 29 4.4
18LOC_Os03g45550:12003.t03930:unspliced-genomic retrotransposo... 31 5.9
19LOC_Os05g41172:12005.t03655:unspliced-genomic histone-lysine... 31 5.9
20LOC_Os11g15560:12011.t01385:unspliced-genomic retrotransposo... 31 8.1
21LOC_Os09g16130:12009.t03497:unspliced-genomic expressed protein 31 8.1
22LOC_Os01g18170:12001.t01612:unspliced-genomic rhicadhesin re... 31 8.1
23LOC_Os12g38280:12012.t03509:unspliced-genomic transposon pro... 31 8.1
24LOC_Os07g37454:12007.t03414:unspliced-genomic organic cation... 31 8.1

>LOC_Os08g44480:12008.t04172:unspliced-genomic 40S ribosomal protein S25-1, putative, expressed|
          Length = 1723
 Score = 80.8 bits (170), Expect(3) = 4e-33
 Identities = 33/36 (91%), Positives = 36/36 (100%)
 Frame = +2 / +2

                                               
Query: 182 VNNAVLFDQATYDKLLTEVPKYKQITPSVLSERLRI 289
           VNN+VLFDQATYDKLL+EVPKYKQITPSVLSERLR+
Sbjct: 368 VNNSVLFDQATYDKLLSEVPKYKQITPSVLSERLRV 475



 Score = 80.8 bits (170), Expect(3) = 4e-33
 Identities = 36/44 (81%), Positives = 40/44 (90%)
 Frame = +2 / +3

                                                        
Query: 269  LSERLRINGSLARRAIKDLMERGLIRMVSIHSSQQIFTRATNT* 400
            L+  L+INGSLARRAI DLM RGLIRMVS+HSSQQI+TRATNT*
Sbjct: 1287 LAISLQINGSLARRAINDLMTRGLIRMVSVHSSQQIYTRATNT* 1418



 Score = 22.6 bits (43), Expect(3) = 4e-33
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1 / +2

                           
Query: 64  AVSHGAEEGEGPCGFV 111
           +V+ G EEG+GP   V
Sbjct: 164 SVAAGPEEGQGPAAVV 211



 Score = 63.4 bits (132), Expect(2) = 1e-18
 Identities = 29/38 (76%), Positives = 31/38 (81%)
 Frame = -2 / -2

                                                 
Query: 300 REPLILSRSERTDGVICLYLGTSVSSLS*VAWSKSTAL 187
           R  + LS SERT+GVICLYLGTS SSLS*VAWS ST L
Sbjct: 486 RR*ITLSLSERTEGVICLYLGTSESSLS*VAWSNSTEL 373



 Score = 51.9 bits (107), Expect(2) = 1e-18
 Identities = 23/37 (62%), Positives = 29/37 (78%)
 Frame = -2 / -1

                                                 
Query: 396  VFVALVKICWLEWIDTILMSPLSIRSLIALRAREPLI 286
            V VALV ICWLE  +T+ + P  I+SL+ALRAR+PLI
Sbjct: 1414 VLVALV*ICWLE*TETMRIRPRVIKSLMALRARDPLI 1304



 Score = 56.1 bits (116), Expect(2) = 1e-13
 Identities = 22/30 (73%), Positives = 25/30 (83%)
 Frame = -3 / -3

                                         
Query: 284 *VARRGRMA*SACTWAPR*AACRKWPGRRA 195
           *V++R R  *SACTWAPR AACR+WPGR A
Sbjct: 470 *VSQRERRG*SACTWAPRRAACRRWPGRTA 381



 Score = 42.8 bits (87), Expect(2) = 1e-13
 Identities = 19/43 (44%), Positives = 26/43 (60%)
 Frame = -1 / -3

                                                       
Query: 397  GVCGPGEDLLAGVDRHHPNEPPLHQVLDSPASQRAIDPESLGE 269
            GV  PG DLLA V+R H +  P H ++D P SQ  +D +  G+
Sbjct: 1415 GVGCPGVDLLA*VNRDHAD*APCH*IIDGPTSQGPVDLQGNGK 1287



 Score = 53.8 bits (111), Expect(2) = 2e-12
 Identities = 23/30 (76%), Positives = 25/30 (83%)
 Frame = +1 / +1

                                         
Query: 196 ALRPGHLRQAAHRGAQVQADHAIRPLRATQ 285
           A+RPGHLRQAA RGAQVQADH +R L  TQ
Sbjct: 382 AVRPGHLRQAALRGAQVQADHPLRSL*ETQ 471



 Score = 40.9 bits (83), Expect(2) = 2e-12
 Identities = 19/48 (39%), Positives = 28/48 (58%)
 Frame = +1 / +2

                                                            
Query: 286  DQWLSGSQGYQGPDGEGAH*DGVYPLQPADLHQGHKHLIYHYHVFYGC 429
            DQ + GS G+Q  +  G +  G+  L+PADLHQG++HL       + C
Sbjct: 1304 DQRVPGS*GHQ*FNDTGPNPHGLGSLKPADLHQGNQHLSVRVTCIFVC 1447



 Score = 48.7 bits (100), Expect(2) = 4e-06
 Identities = 21/26 (80%), Positives = 22/26 (84%)
 Frame = -1 / -1

                                     
Query: 286 PESLGEDGWRDLLVLGHLGEQLVVSG 209
           PESL E+G  DLLVLGHLGEQLVV G
Sbjct: 472 PESLRENGGGDLLVLGHLGEQLVVGG 395



 Score = 24.4 bits (47), Expect(2) = 4e-06
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3 / -2

                          
Query: 401  IRCLWPW*RSAGWS 360
            +RC  PW RSAG S
Sbjct: 1419 LRCWLPWCRSAGLS 1378



 Score = 34.1 bits (68), Expect = 0.88
 Identities = 16/33 (48%), Positives = 17/33 (51%)
 Frame = +3 / +1

                                             
Query: 300  WLAGLSRT*WRGGSLGWCLSTPASRSSPGPQTP 398
            WL G S  *  G    W   T ASRS+PG  TP
Sbjct: 1318 WLVGPSMI**HGA*SAWSRFTQASRSTPGQPTP 1416



to top

>LOC_Os09g39540:12009.t03419:unspliced-genomic 40S ribosomal protein S25, putative, expressed|
          Length = 1411

 Score = 81.7 bits (172), Expect(2) = 1e-32
 Identities = 35/44 (79%), Positives = 41/44 (93%)
 Frame = +2 / +3

                                                        
Query: 281  LRINGSLARRAIKDLMERGLIRMVSIHSSQQIFTRATNT*FIII 412
            L+INGSLARRA+KDLM+RGLIRMVS+H SQQI+TRATNT*  +I
Sbjct: 1086 LQINGSLARRAMKDLMDRGLIRMVSVHCSQQIYTRATNT*CCLI 1217



 Score = 80.8 bits (170), Expect(2) = 1e-32
 Identities = 33/36 (91%), Positives = 36/36 (100%)
 Frame = +2 / +2

                                               
Query: 182 VNNAVLFDQATYDKLLTEVPKYKQITPSVLSERLRI 289
           VNN+VLFDQATYDKLL+EVPKYKQITPSVLSERLR+
Sbjct: 371 VNNSVLFDQATYDKLLSEVPKYKQITPSVLSERLRV 478



 Score = 65.2 bits (136), Expect(3) = 9e-24
 Identities = 29/39 (74%), Positives = 33/39 (84%)
 Frame = -2 / -1

                                                   
Query: 402  NQVFVALVKICWLEWIDTILMSPLSIRSLIALRAREPLI 286
            + VFVALV ICWL+  DTIL+SPLSIRS IAL AR+PLI
Sbjct: 1207 HHVFVALV*ICWLQ*TDTILISPLSIRSFIALLARDPLI 1091



 Score = 63.8 bits (133), Expect(3) = 9e-24
 Identities = 28/35 (80%), Positives = 30/35 (85%)
 Frame = -2 / -2

                                              
Query: 291 LILSRSERTDGVICLYLGTSVSSLS*VAWSKSTAL 187
           + L RSERT+GVICLYLGTS SSLS*VAWS ST L
Sbjct: 480 ITLRRSERTEGVICLYLGTSESSLS*VAWSNSTEL 376



 Score = 22.6 bits (43), Expect(3) = 9e-24
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -1 / -3

                      
Query: 532  QNSKAIQHYW 503
            Q S+ IQHYW
Sbjct: 1325 QKSQNIQHYW 1296



 Score = 61.6 bits (128), Expect(2) = 8e-21
 Identities = 23/42 (54%), Positives = 31/42 (73%)
 Frame = +1 / +2

                                                      
Query: 286  DQWLSGSQGYQGPDGEGAH*DGVYPLQPADLHQGHKHLIYHY 411
            D W+ G +GY+G DG GA+ DGV  LQP DLHQG++H++  Y
Sbjct: 1091 D*WVPG*EGYEGSDG*GAYQDGVGSLQPTDLHQGNEHMMLSY 1216



 Score = 61.1 bits (127), Expect(2) = 8e-21
 Identities = 25/30 (83%), Positives = 27/30 (90%)
 Frame = +1 / +1

                                         
Query: 196 ALRPGHLRQAAHRGAQVQADHAIRPLRATQ 285
           A+RPGHLRQAA RGAQVQADH +RPLRA Q
Sbjct: 385 AVRPGHLRQAALRGAQVQADHPLRPLRAPQ 474



 Score = 60.6 bits (126), Expect(2) = 6e-19
 Identities = 23/28 (82%), Positives = 24/28 (85%)
 Frame = -3 / -3

                                       
Query: 278 ARRGRMA*SACTWAPR*AACRKWPGRRA 195
           ARRGR  *SACTWAPR AACR+WPGR A
Sbjct: 467 ARRGRRG*SACTWAPRRAACRRWPGRTA 384



 Score = 55.6 bits (115), Expect(2) = 6e-19
 Identities = 22/42 (52%), Positives = 30/42 (71%)
 Frame = -1 / -3

                                                      
Query: 412  DNDKSGVCGPGEDLLAGVDRHHPNEPPLHQVLDSPASQRAID 287
            D   S V  PG +LLA ++RHHP++PP+HQ+L SP SQ  I+
Sbjct: 1217 DKTTSCVRCPGVNLLAAMNRHHPDKPPIHQILHSPPSQGPIN 1092



 Score = 55.6 bits (115), Expect = 3e-07
 Identities = 24/44 (54%), Positives = 29/44 (65%)
 Frame = -1 / -1

                                                       
Query: 340 EPPLHQVLDSPASQRAIDPESLGEDGWRDLLVLGHLGEQLVVSG 209
           +P  H ++    +     PE+LGEDG  DLLVLGHLGEQLVV G
Sbjct: 529 QPAWHSIVGGNLNLSMNYPEALGEDGGGDLLVLGHLGEQLVVGG 398



 Score = 46.4 bits (95), Expect = 2e-04
 Identities = 19/37 (51%), Positives = 22/37 (59%)
 Frame = +3 / +1

                                                 
Query: 291  MALWLAGLSRT*WRGGSLGWCLSTPASRSSPGPQTPD 401
            M  WL GL R *W GG  GWC    A+R +PG +T D
Sbjct: 1096 MGPWLGGL*RI*WIGGLSGWCRFIAANRFTPGQRTHD 1206



to top

>LOC_Os11g05562:12011.t04340:unspliced-genomic 40S ribosomal protein S25, putative, expressed|
          Length = 5995

 Score = 79.0 bits (166), Expect(2) = 4e-27
 Identities = 32/36 (88%), Positives = 36/36 (100%)
 Frame = +2 / +1

                                               
Query: 182 VNNAVLFDQATYDKLLTEVPKYKQITPSVLSERLRI 289
           VNN+VLFD+ATYDKLL+EVPKYKQITPSVLSERLR+
Sbjct: 400 VNNSVLFDKATYDKLLSEVPKYKQITPSVLSERLRV 507



 Score = 67.0 bits (140), Expect(2) = 4e-27
 Identities = 30/41 (73%), Positives = 35/41 (85%)
 Frame = +2 / +1

                                                     
Query: 284  RINGSLARRAIKDLMERGLIRMVSIHSSQQIFTRATNT*FI 406
            +INGSLAR+AIKDL  RG IR+VS+HSSQ I+TRATN * I
Sbjct: 5617 QINGSLARQAIKDLESRGAIRVVSVHSSQLIYTRATNA*GI 5739



 Score = 54.2 bits (112), Expect(2) = 1e-15
 Identities = 26/33 (78%), Positives = 27/33 (81%)
 Frame = -2 / -3

                                            
Query: 285 LSRSERTDGVICLYLGTSVSSLS*VAWSKSTAL 187
           LS SERT+GVICLYLGTS  SLS*VA S ST L
Sbjct: 503 LSLSERTEGVICLYLGTSERSLS*VALSNSTEL 405



 Score = 52.8 bits (109), Expect(2) = 1e-15
 Identities = 24/41 (58%), Positives = 29/41 (70%)
 Frame = -2 / -3

                                                     
Query: 408  MINQVFVALVKICWLEWIDTILMSPLSIRSLIALRAREPLI 286
            ++ Q  VALV I WLE  DT LM+PL  RSL+A RA +PLI
Sbjct: 5741 LMPQALVALV*ISWLECTDTTLMAPLDSRSLMACRASDPLI 5619



 Score = 54.7 bits (113), Expect(2) = 4e-13
 Identities = 22/33 (66%), Positives = 26/33 (78%)
 Frame = +1 / +3

                                            
Query: 196 ALRPGHLRQAAHRGAQVQADHAIRPLRATQDQW 294
           A+R GHLRQA+ RGAQVQADH +RPLR  Q  +
Sbjct: 414 AVRQGHLRQASLRGAQVQADHPLRPLREAQGMY 512



 Score = 44.1 bits (90), Expect(2) = 4e-13
 Identities = 18/43 (41%), Positives = 25/43 (58%)
 Frame = +1 / +3

                                                       
Query: 271  LRATQDQWLSGSQGYQGPDGEGAH*DGVYPLQPADLHQGHKHL 399
            L    DQW++ S G+QG   +  H  GV   +PA+LHQ H+ L
Sbjct: 5604 LNVLPDQWVARSTGHQGS*VKRRHQGGVCTFEPANLHQSHQRL 5732



 Score = 53.3 bits (110), Expect(2) = 5e-10
 Identities = 21/30 (70%), Positives = 23/30 (76%)
 Frame = -3 / -1

                                         
Query: 284 *VARRGRMA*SACTWAPR*AACRKWPGRRA 195
           * +RRGR  *SACTWAPR  ACR+WP R A
Sbjct: 502 *ASRRGRRG*SACTWAPRREACRRWPCRTA 413



 Score = 35.0 bits (70), Expect(2) = 5e-10
 Identities = 17/38 (44%), Positives = 23/38 (60%)
 Frame = -1 / -2

                                                  
Query: 400  SGVCGPGEDLLAGVDRHHPNEPPLHQVLDSPASQRAID 287
            S V G G D LA + RHHP+     ++LD  +S+R ID
Sbjct: 5733 SSVGGSGVD*LARMYRHHPDGAS*LKILDGLSSERPID 5620



 Score = 50.6 bits (104), Expect = 1e-05
 Identities = 21/26 (80%), Positives = 22/26 (84%)
 Frame = -1 / -2

                                     
Query: 286 PESLGEDGWRDLLVLGHLGEQLVVSG 209
           PE LGEDG  DLLVLGHLGE+LVV G
Sbjct: 504 PEPLGEDGGGDLLVLGHLGEKLVVGG 427



to top

>LOC_Os10g35580:12010.t02854:unspliced-genomic microtubule-associated protein RP/EB family member 3, putative,|
           expressed
          Length = 2424

 Score = 39.1 bits (79), Expect = 0.027
 Identities = 13/19 (68%), Positives = 15/19 (78%)
 Frame = +3 / -3

                              
Query: 327 WRGGSLGWCLSTPASRSSP 383
           WRG + GWC STP SRS+P
Sbjct: 217 WRGRAAGWC*STPGSRSAP 161



to top

>LOC_Os02g14980:12002.t01291:unspliced-genomic sodium/calcium exchanger protein, expressed|
          Length = 4137

 Score = 33.6 bits (67), Expect(2) = 0.44
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3 / +1

                                  
Query: 330 RGGSLGWCLSTPASRSSPGPQTP 398
           RGG+  WC  T +S SSP P +P
Sbjct: 268 RGGTCSWCSPTASSCSSPPPTSP 336



 Score = 23.1 bits (44), Expect(2) = 0.44
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +1 / +1

                             
Query: 373  DLHQGHKHLIYHYHVFY 423
            ++  GHK+L +HY  ++
Sbjct: 2110 EMKPGHKYL*FHYRFWF 2160



to top

>LOC_Os08g35860:12008.t03326:unspliced-genomic cytokinin dehydrogenase 7, putative, expressed|
          Length = 2949

 Score = 31.3 bits (62), Expect(2) = 1.1
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = -1 / -3

                                                      
Query: 352 HHPNEPPLHQVLDSPASQRAIDPESLGEDGWRDLLVLGHLGEQ 224
           HHP  P L   L   + +RAI P  +    W     LG  GE+
Sbjct: 910 HHPRPPHLQSQLSPVSGRRAIGPSFVPIGWWCGAYRLGRGGER 782



 Score = 23.5 bits (45), Expect(2) = 1.1
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = -1 / -1

                     
Query: 388  GPGEDLLAG 362
            GPGED+LAG
Sbjct: 2532 GPGEDVLAG 2506



to top

>LOC_Os06g17520:12006.t01624:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass|
          Length = 6764

 Score = 33.6 bits (67), Expect = 1.2
 Identities = 18/31 (58%), Positives = 21/31 (67%)
 Frame = -3 / +1

                                           
Query: 452  LSLLD*RTQP*NT****IRCLWPW*RSAGWS 360
            L LLD R  P ++* **IRCLW  * S+ WS
Sbjct: 4312 LCLLDLRMPPLSS*T**IRCLWNT*TSSWWS 4404



to top

>LOC_Os01g49740:12001.t04413:unspliced-genomic vesicular transport-associated repeat protein, putative, expressed|
          Length = 2543

 Score = 33.6 bits (67), Expect = 1.2
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +3 / -3

                                   
Query: 327 WRGGSLGWCLSTPASRSSPGPQTP 398
           WRGG  G C  TP  R+ P P  P
Sbjct: 807 WRGGWTGSCTPTPRCRARPSPWPP 736



to top

>LOC_Os02g45100:12002.t04100:unspliced-genomic mitochondrial import inner membrane translocase subunit tim23,|
           putative, expressed
          Length = 2070

 Score = 27.6 bits (54), Expect(2) = 1.7
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = +1 / +2

                               
Query: 196 ALRPGHLRQAAHRGAQVQAD 255
           ALRP HL     RG QV AD
Sbjct: 176 ALRPAHLAGVPLRGGQVPAD 235



 Score = 22.6 bits (43), Expect(2) = 1.7
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3 / +1

                       
Query: 357 STPASRSSPGPQ 392
           STPAS +SP P+
Sbjct: 262 STPASATSPAPR 297



to top

>LOC_Os12g24160:12012.t02145:unspliced-genomic retrotransposon protein, putative, unclassified|
          Length = 3978

 Score = 32.7 bits (65), Expect = 2.3
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +3 / -3

                               
Query: 339 SLGWCLSTPASRSSPGPQTP 398
           SL WC S+ ++RSSP PQ P
Sbjct: 379 SLPWCASSTSARSSPIPQPP 320



to top

>LOC_Os05g07810:12005.t00661:unspliced-genomic USP family protein, putative, expressed|
          Length = 2475

 Score = 32.7 bits (65), Expect = 2.3
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +3 / +1

                                         
Query: 309 GLSRT*WRGGSLGWCLSTPASRSSPGPQTP 398
           G  R  W   + GWCLST + RSS    +P
Sbjct: 448 GGRRRAWHAPATGWCLSTSSPRSSTSRASP 537



to top

>LOC_Os08g02000:12008.t00099:unspliced-genomic retrotransposon protein, putative, unclassified, expressed|
          Length = 7012

 Score = 32.7 bits (65), Expect = 2.3
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -1 / -1

                                                   
Query: 544  HKVYQNSKAIQHYWWHKCLPGHSELEYNSNTSVYWTREH 428
            H VY  ++A +H  +  C   HS+++  S  SV   R H
Sbjct: 2824 HNVYSQAQASEHLCFVGCCYTHSQMDQESKRSVLACRRH 2708



to top

>LOC_Os01g63580:12001.t05727:unspliced-genomic glycerol-3-phosphate acyltransferase 8, putative, expressed|
          Length = 3162

 Score = 32.2 bits (64), Expect = 3.1
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -3 / -1

                                  
Query: 278  ARRGRMA*SACTWAPR*AACRK 213
            +R GR A S C+W PR A CR+
Sbjct: 2931 SRAGR*ASSGCSWPPRWATCRR 2866



to top

>LOC_Os11g03520:12011.t00243:unspliced-genomic acyltransferase/ carboxylic ester hydrolase/ lipase, putative,|
           expressed
          Length = 1357

 Score = 26.7 bits (52), Expect(2) = 3.2
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3 / +1

                              
Query: 254 SACTWAPR*AACRKWPGRR 198
           S+C W PR  +C  W  RR
Sbjct: 427 SSCGWPPRRCSCCGWRPRR 483



 Score = 22.6 bits (43), Expect(2) = 3.2
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1 / +3

                                      
Query: 337 PPLHQVLDSPASQRAIDPESLGEDGWR 257
           PPL   L+  A++ A      GEDG R
Sbjct: 315 PPLITTLNGTATEVARGVNFAGEDGGR 395



to top

>LOC_Os01g26756:12001.t02355:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass|
          Length = 6631

 Score = 31.8 bits (63), Expect = 4.3
 Identities = 18/31 (58%), Positives = 20/31 (64%)
 Frame = -3 / +3

                                           
Query: 452  LSLLD*RTQP*NT****IRCLWPW*RSAGWS 360
            L LLD R  P ++* **IRCLW  * S  WS
Sbjct: 4179 LCLLDLRMPPLSS*T**IRCLWNT*ISLWWS 4271



to top

>LOC_Os02g17680:12002.t01561:unspliced-genomic helix-loop-helix DNA-binding, putative, expressed|
          Length = 7776

 Score = 31.8 bits (63), Expect = 4.3
 Identities = 14/41 (34%), Positives = 17/41 (41%)
 Frame = -1 / +2

                                                     
Query: 385  PGEDLLAGVDRHHPNEPPLHQVLDSPASQRAIDPESLGEDG 263
            P      G+  HHP+   L Q   SP S       SLG +G
Sbjct: 995  PSSSPWGGIHGHHPHHNALQQQASSPRSSCITSTTSLGSNG 1117



to top

>LOC_Os04g52590:12004.t04733:unspliced-genomic protein kinase domain containing protein, expressed|
          Length = 7802

 Score = 29.0 bits (57), Expect(2) = 4.4
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1 / +3

                                 
Query: 364  GVDRHHPNEPPLHQVLDSPAS 302
            G D+ HP  PPLH  L S A+
Sbjct: 6867 GGDQSHPRRPPLHTGLPSQAA 6929



 Score = 24.9 bits (48), Expect(2) = 4.4
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1 / +3

                         
Query: 526  SKAIQHYWWHKCL 488
            S+A+QH W  KCL
Sbjct: 5556 SRAVQHSWKTKCL 5594



to top

>LOC_Os03g45550:12003.t03930:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass|
          Length = 5252

 Score = 31.3 bits (62), Expect = 5.9
 Identities = 18/31 (58%), Positives = 20/31 (64%)
 Frame = -3 / +3

                                           
Query: 452  LSLLD*RTQP*NT****IRCLWPW*RSAGWS 360
            L LLD    P ++* **IRCLW  * SA WS
Sbjct: 2865 LYLLDLPMPPLSS*T**IRCLWNT*TSAWWS 2957



to top

>LOC_Os05g41172:12005.t03655:unspliced-genomic histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1,|
           putative, expressed
          Length = 6087

 Score = 31.3 bits (62), Expect = 5.9
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = -1 / -3

                                                        
Query: 397 GVCGPGEDLLAGVDRHHPNEPPLHQVLDSPASQRAIDPESLGEDG 263
           G  G   + L    R  P  PP   +L SP  +RAI  E  GE+G
Sbjct: 214 GASGEVVETLEQRHRPPPPRPPTSPLLLSPTDKRAIWEEGEGEEG 80



to top

>LOC_Os11g15560:12011.t01385:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass|
          Length = 6744

 Score = 30.9 bits (61), Expect = 8.1
 Identities = 17/31 (54%), Positives = 20/31 (64%)
 Frame = -3 / +1

                                           
Query: 452  LSLLD*RTQP*NT****IRCLWPW*RSAGWS 360
            L LLD    P ++* **IRCLW  * S+ WS
Sbjct: 4354 LCLLDLPMPPLSS*T**IRCLWST*TSSWWS 4446



to top

>LOC_Os09g16130:12009.t03497:unspliced-genomic expressed protein|
          Length = 513

 Score = 30.9 bits (61), Expect = 8.1
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3 / +1

                                  
Query: 324 *WRGGSLGWCLSTPASRSSPGPQ 392
           *W G S GW  ++ +S SSP PQ
Sbjct: 187 *WLGASRGWLSASASSLSSPHPQ 255



to top

>LOC_Os01g18170:12001.t01612:unspliced-genomic rhicadhesin receptor precursor, putative, expressed|
          Length = 1431

 Score = 30.9 bits (61), Expect = 8.1
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3 / +2

                                   
Query: 327 WRGGSLGWCLSTPASRSSPGPQTP 398
           WRG S GW    P+   SP P++P
Sbjct: 392 WRGYSSGWPPRAPSCSRSPRPRSP 463



to top

>LOC_Os12g38280:12012.t03509:unspliced-genomic transposon protein, putative, unclassified|
          Length = 6508

 Score = 30.9 bits (61), Expect = 8.1
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1 / +1

                                                
Query: 205  PGHLRQAAHRGAQVQADHAIRPLRATQDQWLSGSQG 312
            P   R+AAH  A        R  R  +D+W++G +G
Sbjct: 2539 PEASRRAAHERAPPPRSRGSRHSRTARDEWMTGGEG 2646



to top

>LOC_Os07g37454:12007.t03414:unspliced-genomic organic cation transporter 3, putative, expressed|
          Length = 1978

 Score = 30.9 bits (61), Expect = 8.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1 / -1

                                           
Query: 196 ALRPGHLRQAAHRGAQVQADHAIRPLRATQDQ 291
           ALR GH R+AAH   + + DH   P+    ++
Sbjct: 505 ALRDGHAREAAHPRRRGERDHRAPPVDPAHEE 410


  Database: tigr.seq.out
    Posted date:  Jul 20, 2007  8:58 AM
  Number of letters in database: 166,841,660
  Number of sequences in database:  56,278
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Sequences: 56278
Number of Hits to DB: 177,906,829
Number of extensions: 2509636
Number of successful extensions: 13941
Number of sequences better than 10.0: 24
Length of query: 197
Length of database: 55,613,886
Length adjustment: 48
Effective length of query: 149
Effective length of database: 52,912,542
Effective search space: 7883968758
Effective search space used: 7883968758
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
to top