Clone Information

BLAST Search Result

Clone Name	FLbaf90b12
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	Os02g0279600:Os02g0279600	131	5e-31
2	AK110809:Os08g0166400	32	0.32
3	AK101484:Os05g0495700	28	6.1

>Os02g0279600:Os02g0279600 |
          Length = 121
 Score =  131 bits (329), Expect = 5e-31
 Identities = 72/100 (72%), Positives = 79/100 (79%)
 Frame = +2

Query: 65  KATVAEQIGQAVQSTSNLLQLMEQSSPAQIHXXXXXXXXXXXXXXTKNTEQVLQQLPNVI 244
           +A VAEQI QAVQSTSNLLQLME+SSPAQ H               KNT QVL QLP+VI
Sbjct: 15  QAAVAEQIAQAVQSTSNLLQLMEESSPAQAHLAKLPKKLLAKASLAKNTGQVLHQLPSVI 74

Query: 245 SSLDAFMDSSLQSASQIKTVTQLLSNMESTQLKSILPASR 364
           SSLDA+MD+SLQSASQIKTVTQLLSNME+ QL+SILPASR
Sbjct: 75  SSLDAYMDASLQSASQIKTVTQLLSNMENNQLRSILPASR 114

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>AK110809:Os08g0166400 |
          Length = 454

 Score = 32.3 bits (72), Expect = 0.32
 Identities = 16/47 (34%), Positives = 28/47 (59%)
 Frame = -1

Query: 563 TRTLFCTFQRHLPPESCQLYNSSVTTLFSSRSQLSPGFGEMSRSFCS 423
           TR +FC   R+L P+SCQ   + +   FSS++QL     ++ ++ C+
Sbjct: 170 TRKVFCA--RNLLPQSCQNLENVIEKHFSSKTQLWVAVQQLGQAVCN 214

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>AK101484:Os05g0495700 |
          Length = 552

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +2

Query: 233 PNVISSLDAFMDSSLQSASQIKTVTQLLSNMESTQLKSIL 352
           P VI SL   +++S+    +I T TQ++SN     L++IL
Sbjct: 271 PPVIISLAKGIEASIDPVPRIITPTQMISNATGVPLENIL 310


  Database: orf_amino.fa.out
    Posted date:  Jul 26, 2007 11:37 AM
  Number of letters in database: 15,399,855
  Number of sequences in database:  40,041
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 40041
Number of Hits to DB: 18,443,050
Number of extensions: 387278
Number of successful extensions: 1010
Number of sequences better than 10.0: 3
Number of HSP's gapped: 1010
Number of HSP's successfully gapped: 3
Length of query: 236
Length of database: 15,399,855
Length adjustment: 98
Effective length of query: 138
Effective length of database: 11,475,837
Effective search space: 1583665506
Effective search space used: 1583665506
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result