ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf90b12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LOC_Os02g17850:12002.t01579:unspliced-genomic TOM2B, putativ... 88 5e-40
2LOC_Os11g05790:12011.t00470:unspliced-genomic hypothetical p... 36 0.23
3LOC_Os01g46950:12001.t04145:unspliced-genomic apospory-assoc... 36 0.23
4LOC_Os01g51634:12001.t006911:unspliced-genomic myosin-2 heav... 34 1.1
5LOC_Os04g44650:12004.t04005:unspliced-genomic ferredoxin-thi... 33 2.9
6LOC_Os02g13810:12002.t01177:unspliced-genomic DNA binding pr... 33 2.9
7LOC_Os08g05670:12008.t00461:unspliced-genomic HEAT repeat fa... 32 3.9
8LOC_Os07g07340:12007.t00612:unspliced-genomic glucan endo-1,... 32 3.9
9LOC_Os05g27680:12005.t02419:unspliced-genomic expressed protein 26 5.6
10LOC_Os06g18970:12006.t01720:unspliced-genomic expressed protein 31 7.4
11LOC_Os04g49220:12004.t04438:unspliced-genomic tim10/DDP fami... 31 7.4
12LOC_Os04g18770:12004.t01619:unspliced-genomic retrotransposo... 31 7.4
13LOC_Os07g42160:12007.t03871:unspliced-genomic GTP pyrophosph... 29 8.2

>LOC_Os02g17850:12002.t01579:unspliced-genomic TOM2B, putative, expressed|
          Length = 3110
 Score = 88.1 bits (186), Expect(4) = 5e-40
 Identities = 43/66 (65%), Positives = 51/66 (77%)
 Frame = +2 / +3

                                                                        
Query: 275  LQSASQIKTVTQLLSNMESTQLKSILPASRLQKDQKNTEPGELRVD*CVHCKKILTSHQS 454
            L SASQIKTVTQLLSNME+ QL+SILPASRL+K QK TE GELR++* V+   I+T+  S
Sbjct: 1716 LCSASQIKTVTQLLSNMENNQLRSILPASRLEKAQKKTETGELRIE**VYQ*DIITNLCS 1895

                  
Query: 455  PGSADF 472
            P    F
Sbjct: 1896 PSKGIF 1913



 Score = 57.9 bits (120), Expect(4) = 5e-40
 Identities = 25/30 (83%), Positives = 28/30 (93%)
 Frame = +2 / +1

                                         
Query: 65  KATVAEQIGQAVQSTSNLLQLMEQSSPAQI 154
           +A VAEQI QAVQSTSNLLQLME+SSPAQ+
Sbjct: 55  QAAVAEQIAQAVQSTSNLLQLMEESSPAQV 144



 Score = 44.6 bits (91), Expect(4) = 5e-40
 Identities = 15/21 (71%), Positives = 19/21 (90%)
 Frame = +3 / +1

                                 
Query: 228  SYLM*FLPWMLLWTVVCKAHL 290
            +YL+*FLPWML+WT+VCK  L
Sbjct: 1498 NYLV*FLPWMLIWTLVCKGDL 1560



 Score = 39.6 bits (80), Expect(4) = 5e-40
 Identities = 15/21 (71%), Positives = 16/21 (76%)
 Frame = +3 / +1

                                 
Query: 156  TWLNSLRISWQKHLLQRTQSK 218
            TW N  R SWQKHLLQRTQ +
Sbjct: 1363 TWQNFPRNSWQKHLLQRTQGR 1425



 Score = 82.6 bits (174), Expect(4) = 5e-38
 Identities = 37/51 (72%), Positives = 42/51 (82%)
 Frame = -3 / -2

                                                               
Query: 423  *THQSTLSSPGSVFF*SFCNREAGKIDLSWVLSMFDNSCVTVLI*DALCKL 271
            *T+ S LSSP SVFF +F NREAG+IDLSW+ SMFD SCVTVLI*+AL  L
Sbjct: 1864 *TYHSILSSPVSVFFCAFSNREAGRIDLSWLFSMFDKSCVTVLI*EALQSL 1712



 Score = 57.9 bits (120), Expect(4) = 5e-38
 Identities = 20/23 (86%), Positives = 21/23 (91%)
 Frame = -3 / -1

                                  
Query: 150 WAGEDCSMSWRRLEVDCTACPIC 82
           WAGED SMSWRRL+VDCTAC IC
Sbjct: 140 WAGEDSSMSWRRLDVDCTACAIC 72



 Score = 41.4 bits (84), Expect(4) = 5e-38
 Identities = 19/24 (79%), Positives = 19/24 (79%)
 Frame = -3 / -2

                                    
Query: 288  DALCKLLSIKASKEEITLGSCCST 217
            D LCKL SI ASKEEITLGS C T
Sbjct: 1558 DHLCKLASI*ASKEEITLGS*CRT 1487



 Score = 41.4 bits (84), Expect(4) = 5e-38
 Identities = 16/21 (76%), Positives = 17/21 (80%)
 Frame = -3 / -2

                                 
Query: 219  TCSVFFVRDAFAKRFLGSLAK 157
            TC VFF RDAFAK FLGS A+
Sbjct: 1426 TCPVFFARDAFAKSFLGSFAR 1364



 Score = 66.1 bits (138), Expect(4) = 4e-23
 Identities = 29/46 (63%), Positives = 33/46 (71%)
 Frame = +3 / +1

                                                          
Query: 288  LKLRLSHNCCQTWRAPNLNLFCLPLDYRKIKRILSLENSGLTDVFT 425
            LKLRL H+ CQTWR  + +L CLPL  RK +R L LENSGL D FT
Sbjct: 1729 LKLRLLHSSCQTWRITS*DLSCLPLG*RKHRRKLRLENSGLNDKFT 1866



 Score = 41.4 bits (84), Expect(4) = 4e-23
 Identities = 16/21 (76%), Positives = 18/21 (85%)
 Frame = +1 / +2

                                 
Query: 226  TAT*CNFFLGCFYGQ*FAKRI 288
            + T*CNFFLGC YG+*FAK I
Sbjct: 1496 STT*CNFFLGCLYGR*FAKVI 1558



 Score = 34.1 bits (68), Expect(4) = 4e-23
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = +1 / +3

                           
Query: 103 VHLQPSPAHGAVLPCP 150
           VH+QP PAHG VLP P
Sbjct: 93  VHVQPPPAHGGVLPGP 140



 Score = 30.4 bits (60), Expect(4) = 4e-23
 Identities = 14/19 (73%), Positives = 15/19 (78%)
 Frame = +1 / +2

                               
Query: 160  G*TP*ESLGKSISYKEHRA 216
            G T  E+LGKSIS KEHRA
Sbjct: 1367 GKTSQETLGKSISCKEHRA 1423



 Score = 54.2 bits (112), Expect(4) = 4e-22
 Identities = 29/43 (67%), Positives = 32/43 (74%)
 Frame = -1 / -3

                                                       
Query: 416  ISQP*VLQAQYSFDLSVIERQAK*I*VGCSPCLTTVV*QS*FE 288
            I Q *VLQ+Q+S  LS+ ERQA *I  G SPCLT  V*QS*FE
Sbjct: 1857 IIQS*VLQSQFSSVLSLTERQAG*ISAGYSPCLTRAV*QS*FE 1729



 Score = 47.8 bits (98), Expect(4) = 4e-22
 Identities = 19/22 (86%), Positives = 20/22 (90%)
 Frame = -2 / -3

                                 
Query: 151 LGRGGLLHELEKVGGGLHRLPY 86
           LGRGGLLHELE+VG GLHRL Y
Sbjct: 141 LGRGGLLHELEEVGRGLHRLRY 76



 Score = 34.1 bits (68), Expect(4) = 4e-22
 Identities = 14/19 (73%), Positives = 15/19 (78%)
 Frame = -2 / -1

                               
Query: 289  RCALQTTVHKSIQGRNYIR 233
            R  LQT+VH SIQGRNY R
Sbjct: 1559 RSPLQTSVHISIQGRNYTR 1503



 Score = 32.7 bits (65), Expect(4) = 4e-22
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = -2 / -1

                             
Query: 199  KRCFCQEILREFSQVDL 149
            KRCFCQE L +F QV L
Sbjct: 1406 KRCFCQEFLGKFCQVSL 1356



 Score = 61.6 bits (128), Expect(2) = 3e-14
 Identities = 26/43 (60%), Positives = 33/43 (76%)
 Frame = +1 / +2

                                                       
Query: 289  SN*DCHTTVVKHGEHPT*IYFACLSITERSKEY*AWRTQG*LM 417
            SN*DC+T +VKHGE P  IY ACLS+ E ++E * WRTQ *++
Sbjct: 1730 SN*DCYTALVKHGE*PAEIYPACLSVRESTEEN*DWRTQD*MI 1858



 Score = 40.9 bits (83), Expect(2) = 3e-14
 Identities = 17/21 (80%), Positives = 20/21 (95%)
 Frame = +2 / +3

                                 
Query: 218  VLQQLPNVISSLDAFMDSSLQ 280
            VL QLP+VISSLDA+MD+SLQ
Sbjct: 1488 VLHQLPSVISSLDAYMDASLQ 1550



 Score = 40.5 bits (82), Expect(4) = 2e-07
 Identities = 17/24 (70%), Positives = 21/24 (87%)
 Frame = -2 / -1

                                    
Query: 358  GRQNRFKLGALHV*QQLCDSLNLR 287
            GRQ+R +L  LHV*Q+LC+SLNLR
Sbjct: 1799 GRQDRSQLVILHV*QELCNSLNLR 1728



 Score = 29.0 bits (57), Expect(4) = 2e-07
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = -1 / -2

                        
Query: 140 RTAP*AGEGWRWT 102
           RT P*AG GW WT
Sbjct: 130 RTPP*AGGGWTWT 92



 Score = 24.9 bits (48), Expect(4) = 2e-07
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1 / -3

                            
Query: 290  EMRFANYCP*KHPRKK 243
            ++ FAN  P KHPRKK
Sbjct: 1560 KITFAN*RPYKHPRKK 1513



 Score = 22.6 bits (43), Expect(4) = 2e-07
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = -1 / -3

                      
Query: 209  CSL*EMLLPR 180
            CSL EMLLPR
Sbjct: 1416 CSLQEMLLPR 1387



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>LOC_Os11g05790:12011.t00470:unspliced-genomic hypothetical protein|
          Length = 2259

 Score = 36.3 bits (73), Expect = 0.23
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -3 / -1

                                                   
Query: 225 CSTCSVFFVRDAFAKRFLGSLAKWIWAGEDCSMSWRRLEV 106
           CS CS  F RD   +  +G   K  +AG  C   WR+++V
Sbjct: 270 CSVCSKGFKRDDNLRMHMGGHGKEAYAGAYCVRPWRQVQV 151



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>LOC_Os01g46950:12001.t04145:unspliced-genomic apospory-associated protein C, putative, expressed|
          Length = 4186

 Score = 36.3 bits (73), Expect = 0.23
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1 / +1

                                  
Query: 493 TEELYSWQDSGGRWRWNVQKRVL 561
           T EL+ W+ SGGRWRW    R +
Sbjct: 448 TSELF*WRPSGGRWRWRCFARCI 516



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>LOC_Os01g51634:12001.t006911:unspliced-genomic myosin-2 heavy chain, non muscle, putative, expressed|
          Length = 5379

 Score = 34.1 bits (68), Expect = 1.1
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -3 / +3

                                                 
Query: 708 IFFFFLRNHNKHI*WFDSSTEPTPKV*SLKEVTLSALC 595
           I FFF RN +  +*W +  +   P V*+L E+ L  +C
Sbjct: 861 IVFFFRRNASGIV*WNEGRSHELPTV*ALGEIHLLIIC 974



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>LOC_Os04g44650:12004.t04005:unspliced-genomic ferredoxin-thioredoxin reductase, variable chain, putative,|
           expressed
          Length = 871

 Score = 32.7 bits (65), Expect = 2.9
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1 / -2

                                      
Query: 511 WQDSGGRWRWNVQKRVLVAYWCFETTR 591
           W+ +  RWRW V    LVA W   ++R
Sbjct: 186 WRGTPRRWRWRVPSARLVAVWGISSSR 106



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>LOC_Os02g13810:12002.t01177:unspliced-genomic DNA binding protein, putative, expressed|
          Length = 4689

 Score = 32.7 bits (65), Expect = 2.9
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -1 / +1

                                               
Query: 521  ESCQLYNSSVTTLFSSRSQLSPGFGEMSRSFCSEH 417
            + CQL    V  L   + +L   F E SRS C+ H
Sbjct: 2557 KKCQLMEQEVENLSRDKQELQEKFAEKSRSVCTVH 2661



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>LOC_Os08g05670:12008.t00461:unspliced-genomic HEAT repeat family protein, expressed|
          Length = 7184

 Score = 32.2 bits (64), Expect = 3.9
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +3 / -3

                         
Query: 315 CQTWRAPNLNLFCL 356
           C TWRAPNL L C+
Sbjct: 51  CHTWRAPNLTLTCI 10



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>LOC_Os07g07340:12007.t00612:unspliced-genomic glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed|
          Length = 3421

 Score = 32.2 bits (64), Expect = 3.9
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = -3 / +3

                                             
Query: 183  KRFLGSLAKWIWAGEDCSMSWRRLEVDCTACPI 85
            K+ +  +  W W G   SM W    + C+  PI
Sbjct: 1170 KQGINQIKNWFWGGPVLSMVWTHGNITCSCSPI 1268



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>LOC_Os05g27680:12005.t02419:unspliced-genomic expressed protein|
          Length = 904

 Score = 26.3 bits (51), Expect(2) = 5.6
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3 / +2

                             
Query: 264 WTVVCKAHLKLRLSHNCC 317
           WT  C  +L L ++H CC
Sbjct: 824 WTYSCPVNLLLLVAHLCC 877



 Score = 22.6 bits (43), Expect(2) = 5.6
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3 / +2

                         
Query: 180 SWQKHLLQRTQSKC 221
           SWQ+    R +SKC
Sbjct: 740 SWQRQARHRQESKC 781



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>LOC_Os06g18970:12006.t01720:unspliced-genomic expressed protein|
          Length = 6828

 Score = 31.3 bits (62), Expect = 7.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3 / +3

                                    
Query: 162 AKWIWAGEDCSMSWRRLEVDCTACP 88
           A+W+W    C+ SWRR  V  +  P
Sbjct: 165 ARWVWGRRLCASSWRRRHVCRSPAP 239



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>LOC_Os04g49220:12004.t04438:unspliced-genomic tim10/DDP family zinc finger containing protein|
          Length = 5344

 Score = 31.3 bits (62), Expect = 7.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3 / -3

                                      
Query: 192  HLLQRTQSKCYNSYLM*FLPWMLLWT 269
            +LL     +CYN Y + F+PW+  WT
Sbjct: 2516 YLLHVFLLQCYNFYHLNFIPWVSPWT 2439



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>LOC_Os04g18770:12004.t01619:unspliced-genomic retrotransposon protein, putative, unclassified|
          Length = 5334

 Score = 31.3 bits (62), Expect = 7.4
 Identities = 11/45 (24%), Positives = 27/45 (60%)
 Frame = -3 / -3

                                                         
Query: 375  SFCNREAGKIDLSWVLSMFDNSCVTVLI*DALCKLLSIKASKEEI 241
            +FC   + K+  S+ + +F++SC+ +    +L    +++ S+E+I
Sbjct: 3922 TFCRGRSTKVHTSFQVKLFNSSCIAITQSGSLRASSTLRGSREDI 3788



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>LOC_Os07g42160:12007.t03871:unspliced-genomic GTP pyrophosphokinase, putative, expressed|
          Length = 3519

 Score = 29.0 bits (57), Expect(2) = 8.2
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -2 / -1

                          
Query: 148 GRGGLLHELEKVGGG 104
           GRGG+LH L + GGG
Sbjct: 264 GRGGVLHHLHRHGGG 220



 Score = 23.5 bits (45), Expect(2) = 8.2
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3 / -2

                        
Query: 246  EITLGSCCSTCS 211
            EITL SCC  C+
Sbjct: 2000 EITLPSCCRYCT 1965


  Database: tigr.seq.out
    Posted date:  Jul 20, 2007  8:58 AM
  Number of letters in database: 166,841,660
  Number of sequences in database:  56,278
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Sequences: 56278
Number of Hits to DB: 280,389,952
Number of extensions: 4509815
Number of successful extensions: 17719
Number of sequences better than 10.0: 13
Length of query: 236
Length of database: 55,613,886
Length adjustment: 49
Effective length of query: 187
Effective length of database: 52,856,264
Effective search space: 9884121368
Effective search space used: 9884121368
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
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