ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf93d23 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001071339.1| Oryza sativa (japonica cultivar-group) Os10g0466300 (Os10g0466300) mRNA, complete cds Length = 2083 Score = 1556 bits (785), Expect = 0.0 Identities = 1366/1559 (87%), Gaps = 3/1559 (0%) Strand = Plus / Plus Query: 116 atgatctgcgcaatctccggcgaggtgcctgatgagccggtggtatcaaagaggtcgggg 175 ||||||||||||||||||||||||||||| |||||||||||||| || |||| ||| ||| Sbjct: 211 atgatctgcgcaatctccggcgaggtgccggatgagccggtggtgtcgaagaagtccggg 270 Query: 176 ctcctctttgagcggcggctcgtcgagcgctacattgaggaccacgggaagtgtccagtc 235 || ||||| |||||||||||||||||||||||||| |||||||| |||||||| |||||| Sbjct: 271 cttctcttcgagcggcggctcgtcgagcgctacatcgaggaccatgggaagtgcccagtc 330 Query: 236 acgaaggaggaactctccatggacgacatcgtgctggtgaagaccaacaaggtcgtgagg 295 || |||||||| ||| ||||||||||||||||| |||||||||||||||||| |||| | Sbjct: 331 accaaggaggagctcaccatggacgacatcgtggcggtgaagaccaacaaggttgtgaag 390 Query: 296 cctaggcctctgcaggctgcaagcattcccggactccttggaatctttcaaaacgagtgg 355 || || | |||||||||||||||||||||||||||| || || || ||||| |||||| Sbjct: 391 cccagacaattgcaggctgcaagcattcccggactcctggggatgttccaaaatgagtgg 450 Query: 356 gatgcccttatgctttctaattttgctttggagcagcagcttcacacagcaagacaagaa 415 ||||| | |||||||||| |||||||||||||||||||||||| ||||||||||||||| Sbjct: 451 gatgctatcatgctttctagttttgctttggagcagcagcttcatacagcaagacaagaa 510 Query: 416 ctgagtcatgcgttataccagcatgatgctgcctgccgtgttatagccagattaaagaag 475 || ||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct: 511 cttagtcatgcgctatatcagcatgatgctgcctgccgtgttatagctagattaaagaaa 570 Query: 476 gaaagagatgagtctagagcgcttttggctctagctgagagacagattcctgcgtcgatg 535 ||| ||||||| | ||||| |||||||||| ||||||||||||||||||||| |||||| Sbjct: 571 gaacgagatgaagccagagcacttttggctcaagctgagagacagattcctgcatcgatg 630 Query: 536 gcgggagttgcacctgcagctgtcgtttccaatggaaaaagagcaatggaggatgaaatt 595 || |||| ||||||| ||||||| || ||||| || ||||||||| | || |||||| || Sbjct: 631 gcaggagctgcacctacagctgttgtctccaacgggaaaagagcatttgaagatgaagtt 690 Query: 596 ggccctgatgggaagaagatacgccctggtatcaatcctgtcatgatcgatgaactaaca 655 || || || ||||||||||| || ||||||||||| ||||| ||||| |||||||||||| Sbjct: 691 ggaccagacgggaagaagattcgtcctggtatcaaccctgtgatgattgatgaactaaca 750 Query: 656 gagtgtaataccatgctttctgctcagcgtaagaaacggcaggcaccaccaagtttggca 715 ||||||||||||||||| ||||| || ||||||||||| |||| || |||| ||||||| Sbjct: 751 gagtgtaataccatgctctctgcgcatcgtaagaaacgacaggttcctccaactttggca 810 Query: 716 tcaattgatgaactagagaaatatactcagatctctagtcatccactccacaagacaaac 775 |||||||||| | | |||| |||||| |||||||| ||||||||||| |||||||||||| Sbjct: 811 tcaattgatgcaattgagagatatacccagatctccagtcatccacttcacaagacaaac 870 Query: 776 aagccaggcattttatctatggatatccatccgtcaaaggacatagttgcaactgggggt 835 || |||||||| |||||||||||||| ||||| ||||||||||| |||||||||| || Sbjct: 871 aaaccaggcatcttatctatggatattcatccttcaaaggacattattgcaactggtggc 930 Query: 836 atcgatacgaatgcagtgctatttgataggacatctggtcaaatcctgtgtacacttgct 895 || ||||| || |||||||| ||||| ||| |||| ||||||||| |||| |||||| || Sbjct: 931 attgatacaaacgcagtgctttttgacaggccatccggtcaaatcttgtgcacacttact 990 Query: 896 ggtcactccaagaagataaccactttgaaatttgttccacgggacgagcttgtggtaact 955 |||||||| ||||||||||||| ||||||||||||||| ||||| ||||| | |||||| Sbjct: 991 ggtcactcaaagaagataaccagtttgaaatttgttcctcgggatgagctctttgtaact 1050 Query: 956 ggatcagcagataagactgttcggatttggcaagggactgaggagggaaactacagttgc 1015 ||||||||||||||||||||| ||||||||||| | ||||||||||| |||| |||| Sbjct: 1051 ggatcagcagataagactgttaaaatttggcaaggaagcgaggagggaaattacaattgc 1110 Query: 1016 atccatacattgaaagatcataccgctgaggttgaagctgttactgtgcatgcgactcag 1075 |||||||||||||||||||| || || ||||||||||||||||| || |||||||||||| Sbjct: 1111 atccatacattgaaagatcacactgccgaggttgaagctgttacagtccatgcgactcag 1170 Query: 1076 aagtacttcgtgaccgctgccaaggataatacttggtgcttctatgatatttcaactggg 1135 |||||||| ||||| ||| ||||||||||||||||||||||||| |||||| || | || Sbjct: 1171 aagtactttgtgactgcttccaaggataatacttggtgcttctacgatattccatcagga 1230 Query: 1136 tcttgcctctcacaggttggcgaggcttcaggacaagagggatatacatctgcatctttc 1195 ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 1231 tcttgcctcacacaggttggcgagtcttcaggacaagagggatatacatctgcatctttc 1290 Query: 1196 cacccagatggtcttatccttggaacaggaactactgaagccgttgtcaaaatttgggat 1255 |||||||||||||||||||| || ||||| || |||||||| |||||||||||||||||| Sbjct: 1291 cacccagatggtcttatcctggggacagggaccactgaagctgttgtcaaaatttgggat 1350 Query: 1256 gtgaagactcagtccaatgttgcaaagtttgaggggcatactggacctgttactgctatg 1315 |||||||| ||||| |||||||||||||||||||||||| |||||| || ||||||||| Sbjct: 1351 gtgaagacgcagtcaaatgttgcaaagtttgaggggcatgttggaccagtgactgctatg 1410 Query: 1316 tccttctctgaaaatggttacttcctggcgactgctgctcttgatggtgtcaaactttgg 1375 |||||||||||||||||||||||||| |||||||||||||| ||||| ||||| |||||| Sbjct: 1411 tccttctctgaaaatggttacttccttgcgactgctgctctcgatggagtcaagctttgg 1470 Query: 1376 gatctaagaaaattgagaaattttaggactttctcgccatatgattcggacacgccgaca 1435 ||||| ||||||| ||||| |||||||| | || || ||||| || |||||||| ||| Sbjct: 1471 gatcttcgaaaattaagaaactttaggacgatatcaccttatgactcagacacgccaaca 1530 Query: 1436 aattctgtggaatttgattttagcggcacctatcttgctgttgctggttcagatattagg 1495 ||||||||||||||||| |||||||| | ||||| ||||||| ||||||||||| ||| Sbjct: 1531 aattctgtggaatttgactttagcggaagttatctagctgttggtggttcagatacaagg 1590 Query: 1496 gtataccaagtagctaatgtcaagaccgaatggaatcttatcaagaccttaccagatgta 1555 || ||||||||||| ||||| ||| |||||||||||| ||||||||||||||||| | Sbjct: 1591 gtttaccaagtagcaaatgttaagcttgaatggaatcttgtcaagaccttaccagatttg 1650 Query: 1556 tcaggaacagggaaagtgacctctgcgaagttcggcactgatgctaaatatatcgccgtc 1615 ||||| |||||||||||||| | ||||| ||||| ||||| || || || ||||| Sbjct: 1651 tcaggcacagggaaagtgacaaacgtcaagtttggcaccgatgcgaagtacattgccgta 1710 Query: 1616 ggctctatggaccgtaacctgaggatatttgggcttcctgg---agatgatcaaatgga 1671 || |||||||| |||||||| |||||||||||| ||| || ||||||||||||||| Sbjct: 1711 ggttctatggatcgtaacctacggatatttgggcatccgggagaagatgatcaaatgga 1769
>dbj|AK064778.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000B03, full insert sequence Length = 2084 Score = 1556 bits (785), Expect = 0.0 Identities = 1366/1559 (87%), Gaps = 3/1559 (0%) Strand = Plus / Plus Query: 116 atgatctgcgcaatctccggcgaggtgcctgatgagccggtggtatcaaagaggtcgggg 175 ||||||||||||||||||||||||||||| |||||||||||||| || |||| ||| ||| Sbjct: 212 atgatctgcgcaatctccggcgaggtgccggatgagccggtggtgtcgaagaagtccggg 271 Query: 176 ctcctctttgagcggcggctcgtcgagcgctacattgaggaccacgggaagtgtccagtc 235 || ||||| |||||||||||||||||||||||||| |||||||| |||||||| |||||| Sbjct: 272 cttctcttcgagcggcggctcgtcgagcgctacatcgaggaccatgggaagtgcccagtc 331 Query: 236 acgaaggaggaactctccatggacgacatcgtgctggtgaagaccaacaaggtcgtgagg 295 || |||||||| ||| ||||||||||||||||| |||||||||||||||||| |||| | Sbjct: 332 accaaggaggagctcaccatggacgacatcgtggcggtgaagaccaacaaggttgtgaag 391 Query: 296 cctaggcctctgcaggctgcaagcattcccggactccttggaatctttcaaaacgagtgg 355 || || | |||||||||||||||||||||||||||| || || || ||||| |||||| Sbjct: 392 cccagacaattgcaggctgcaagcattcccggactcctggggatgttccaaaatgagtgg 451 Query: 356 gatgcccttatgctttctaattttgctttggagcagcagcttcacacagcaagacaagaa 415 ||||| | |||||||||| |||||||||||||||||||||||| ||||||||||||||| Sbjct: 452 gatgctatcatgctttctagttttgctttggagcagcagcttcatacagcaagacaagaa 511 Query: 416 ctgagtcatgcgttataccagcatgatgctgcctgccgtgttatagccagattaaagaag 475 || ||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct: 512 cttagtcatgcgctatatcagcatgatgctgcctgccgtgttatagctagattaaagaaa 571 Query: 476 gaaagagatgagtctagagcgcttttggctctagctgagagacagattcctgcgtcgatg 535 ||| ||||||| | ||||| |||||||||| ||||||||||||||||||||| |||||| Sbjct: 572 gaacgagatgaagccagagcacttttggctcaagctgagagacagattcctgcatcgatg 631 Query: 536 gcgggagttgcacctgcagctgtcgtttccaatggaaaaagagcaatggaggatgaaatt 595 || |||| ||||||| ||||||| || ||||| || ||||||||| | || |||||| || Sbjct: 632 gcaggagctgcacctacagctgttgtctccaacgggaaaagagcatttgaagatgaagtt 691 Query: 596 ggccctgatgggaagaagatacgccctggtatcaatcctgtcatgatcgatgaactaaca 655 || || || ||||||||||| || ||||||||||| ||||| ||||| |||||||||||| Sbjct: 692 ggaccagacgggaagaagattcgtcctggtatcaaccctgtgatgattgatgaactaaca 751 Query: 656 gagtgtaataccatgctttctgctcagcgtaagaaacggcaggcaccaccaagtttggca 715 ||||||||||||||||| ||||| || ||||||||||| |||| || |||| ||||||| Sbjct: 752 gagtgtaataccatgctctctgcgcatcgtaagaaacgacaggttcctccaactttggca 811 Query: 716 tcaattgatgaactagagaaatatactcagatctctagtcatccactccacaagacaaac 775 |||||||||| | | |||| |||||| |||||||| ||||||||||| |||||||||||| Sbjct: 812 tcaattgatgcaattgagagatatacccagatctccagtcatccacttcacaagacaaac 871 Query: 776 aagccaggcattttatctatggatatccatccgtcaaaggacatagttgcaactgggggt 835 || |||||||| |||||||||||||| ||||| ||||||||||| |||||||||| || Sbjct: 872 aaaccaggcatcttatctatggatattcatccttcaaaggacattattgcaactggtggc 931 Query: 836 atcgatacgaatgcagtgctatttgataggacatctggtcaaatcctgtgtacacttgct 895 || ||||| || |||||||| ||||| ||| |||| ||||||||| |||| |||||| || Sbjct: 932 attgatacaaacgcagtgctttttgacaggccatccggtcaaatcttgtgcacacttact 991 Query: 896 ggtcactccaagaagataaccactttgaaatttgttccacgggacgagcttgtggtaact 955 |||||||| ||||||||||||| ||||||||||||||| ||||| ||||| | |||||| Sbjct: 992 ggtcactcaaagaagataaccagtttgaaatttgttcctcgggatgagctctttgtaact 1051 Query: 956 ggatcagcagataagactgttcggatttggcaagggactgaggagggaaactacagttgc 1015 ||||||||||||||||||||| ||||||||||| | ||||||||||| |||| |||| Sbjct: 1052 ggatcagcagataagactgttaaaatttggcaaggaagcgaggagggaaattacaattgc 1111 Query: 1016 atccatacattgaaagatcataccgctgaggttgaagctgttactgtgcatgcgactcag 1075 |||||||||||||||||||| || || ||||||||||||||||| || |||||||||||| Sbjct: 1112 atccatacattgaaagatcacactgccgaggttgaagctgttacagtccatgcgactcag 1171 Query: 1076 aagtacttcgtgaccgctgccaaggataatacttggtgcttctatgatatttcaactggg 1135 |||||||| ||||| ||| ||||||||||||||||||||||||| |||||| || | || Sbjct: 1172 aagtactttgtgactgcttccaaggataatacttggtgcttctacgatattccatcagga 1231 Query: 1136 tcttgcctctcacaggttggcgaggcttcaggacaagagggatatacatctgcatctttc 1195 ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 1232 tcttgcctcacacaggttggcgagtcttcaggacaagagggatatacatctgcatctttc 1291 Query: 1196 cacccagatggtcttatccttggaacaggaactactgaagccgttgtcaaaatttgggat 1255 |||||||||||||||||||| || ||||| || |||||||| |||||||||||||||||| Sbjct: 1292 cacccagatggtcttatcctggggacagggaccactgaagctgttgtcaaaatttgggat 1351 Query: 1256 gtgaagactcagtccaatgttgcaaagtttgaggggcatactggacctgttactgctatg 1315 |||||||| ||||| |||||||||||||||||||||||| |||||| || ||||||||| Sbjct: 1352 gtgaagacgcagtcaaatgttgcaaagtttgaggggcatgttggaccagtgactgctatg 1411 Query: 1316 tccttctctgaaaatggttacttcctggcgactgctgctcttgatggtgtcaaactttgg 1375 |||||||||||||||||||||||||| |||||||||||||| ||||| ||||| |||||| Sbjct: 1412 tccttctctgaaaatggttacttccttgcgactgctgctctcgatggagtcaagctttgg 1471 Query: 1376 gatctaagaaaattgagaaattttaggactttctcgccatatgattcggacacgccgaca 1435 ||||| ||||||| ||||| |||||||| | || || ||||| || |||||||| ||| Sbjct: 1472 gatcttcgaaaattaagaaactttaggacgatatcaccttatgactcagacacgccaaca 1531 Query: 1436 aattctgtggaatttgattttagcggcacctatcttgctgttgctggttcagatattagg 1495 ||||||||||||||||| |||||||| | ||||| ||||||| ||||||||||| ||| Sbjct: 1532 aattctgtggaatttgactttagcggaagttatctagctgttggtggttcagatacaagg 1591 Query: 1496 gtataccaagtagctaatgtcaagaccgaatggaatcttatcaagaccttaccagatgta 1555 || ||||||||||| ||||| ||| |||||||||||| ||||||||||||||||| | Sbjct: 1592 gtttaccaagtagcaaatgttaagcttgaatggaatcttgtcaagaccttaccagatttg 1651 Query: 1556 tcaggaacagggaaagtgacctctgcgaagttcggcactgatgctaaatatatcgccgtc 1615 ||||| |||||||||||||| | ||||| ||||| ||||| || || || ||||| Sbjct: 1652 tcaggcacagggaaagtgacaaacgtcaagtttggcaccgatgcgaagtacattgccgta 1711 Query: 1616 ggctctatggaccgtaacctgaggatatttgggcttcctgg---agatgatcaaatgga 1671 || |||||||| |||||||| |||||||||||| ||| || ||||||||||||||| Sbjct: 1712 ggttctatggatcgtaacctacggatatttgggcatccgggagaagatgatcaaatgga 1770
>dbj|AK104909.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-H12, full insert sequence Length = 1965 Score = 1532 bits (773), Expect = 0.0 Identities = 1363/1559 (87%), Gaps = 3/1559 (0%) Strand = Plus / Plus Query: 116 atgatctgcgcaatctccggcgaggtgcctgatgagccggtggtatcaaagaggtcgggg 175 ||||||||||||||||||||||||||||| |||||||||||||| || |||| ||| ||| Sbjct: 133 atgatctgcgcaatctccggcgaggtgccggatgagccggtggtgtcgaagaagtccggg 192 Query: 176 ctcctctttgagcggcggctcgtcgagcgctacattgaggaccacgggaagtgtccagtc 235 || ||||| |||||||||||||||||||||||||| |||||||| |||||||| |||||| Sbjct: 193 cttctcttcgagcggcggctcgtcgagcgctacatcgaggaccatgggaagtgcccagtc 252 Query: 236 acgaaggaggaactctccatggacgacatcgtgctggtgaagaccaacaaggtcgtgagg 295 || |||||||| ||| ||||||||||||||||| |||||||||||||||||| |||| | Sbjct: 253 accaaggaggagctcaccatggacgacatcgtggcggtgaagaccaacaaggttgtgaag 312 Query: 296 cctaggcctctgcaggctgcaagcattcccggactccttggaatctttcaaaacgagtgg 355 || || | |||||||||||||||||||||||||||| || || || ||||| |||||| Sbjct: 313 cccagacaattgcaggctgcaagcattcccggactcctggggatgttccaaaatgagtgg 372 Query: 356 gatgcccttatgctttctaattttgctttggagcagcagcttcacacagcaagacaagaa 415 ||||| | |||||||||| |||||||||||||||||||||||| ||||||||||||||| Sbjct: 373 gatgctatcatgctttctagttttgctttggagcagcagcttcatacagcaagacaagaa 432 Query: 416 ctgagtcatgcgttataccagcatgatgctgcctgccgtgttatagccagattaaagaag 475 || ||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct: 433 cttagtcatgcgctatatcagcatgatgctgcctgccgtgttatagctagattaaagaaa 492 Query: 476 gaaagagatgagtctagagcgcttttggctctagctgagagacagattcctgcgtcgatg 535 ||| ||||||| | ||||| |||||||||| ||||||||||||||||||||| |||||| Sbjct: 493 gaacgagatgaagccagagcacttttggctcaagctgagagacagattcctgcatcgatg 552 Query: 536 gcgggagttgcacctgcagctgtcgtttccaatggaaaaagagcaatggaggatgaaatt 595 || |||| ||||||| ||||||| || ||||| || ||||||||| | || || ||| || Sbjct: 553 gcaggagctgcacctacagctgttgtctccaacgggaaaagagcatttgaagacgaagtt 612 Query: 596 ggccctgatgggaagaagatacgccctggtatcaatcctgtcatgatcgatgaactaaca 655 || || || ||||||||||| || ||||||||||| ||||| ||||| |||||||||||| Sbjct: 613 ggaccagacgggaagaagattcgtcctggtatcaaccctgtgatgattgatgaactaaca 672 Query: 656 gagtgtaataccatgctttctgctcagcgtaagaaacggcaggcaccaccaagtttggca 715 ||||||||||||||||| ||||| || ||||||||||| |||| || |||| ||||||| Sbjct: 673 gagtgtaataccatgctctctgcgcatcgtaagaaacgacaggttcctccaactttggca 732 Query: 716 tcaattgatgaactagagaaatatactcagatctctagtcatccactccacaagacaaac 775 |||||||||| | | |||| |||||| |||||||| ||||||||||| |||||||||||| Sbjct: 733 tcaattgatgcaattgagagatatacccagatctccagtcatccacttcacaagacaaac 792 Query: 776 aagccaggcattttatctatggatatccatccgtcaaaggacatagttgcaactgggggt 835 || |||||||| |||||||||||||| ||||| ||||||||||| |||||||||| || Sbjct: 793 aaaccaggcatcttatctatggatattcatccttcaaaggacattattgcaactggtggc 852 Query: 836 atcgatacgaatgcagtgctatttgataggacatctggtcaaatcctgtgtacacttgct 895 || ||||| || |||||||| ||||| ||| |||| ||||||||| |||| |||||| || Sbjct: 853 attgatacaaacgcagtgctttttgacaggccatccggtcaaatcttgtgcacacttact 912 Query: 896 ggtcactccaagaagataaccactttgaaatttgttccacgggacgagcttgtggtaact 955 |||||||| ||||||||||||| ||||||||||||||| ||||| ||||| | |||||| Sbjct: 913 ggtcactcaaagaagataaccagtttgaaatttgttcctcgggatgagctctttgtaact 972 Query: 956 ggatcagcagataagactgttcggatttggcaagggactgaggagggaaactacagttgc 1015 ||||||||||||||||||||| ||||||||||| | |||| |||||| |||| |||| Sbjct: 973 ggatcagcagataagactgttaaaatttggcaaggaagcgaggggggaaattacaattgc 1032 Query: 1016 atccatacattgaaagatcataccgctgaggttgaagctgttactgtgcatgcgactcag 1075 |||||||||||||||||||| || || ||||||||||||||||| || |||||||||||| Sbjct: 1033 atccatacattgaaagatcacactgccgaggttgaagctgttacagtccatgcgactcag 1092 Query: 1076 aagtacttcgtgaccgctgccaaggataatacttggtgcttctatgatatttcaactggg 1135 |||||||| ||||| ||| ||||||||||||||||||||||||| |||||| || | || Sbjct: 1093 aagtactttgtgactgcttccaaggataatacttggtgcttctacgatattccatcagga 1152 Query: 1136 tcttgcctctcacaggttggcgaggcttcaggacaagagggatatacatctgcatctttc 1195 ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 1153 tcttgcctcacacaggttggcgagtcttcaggacaagagggatatacatctgcatctttc 1212 Query: 1196 cacccagatggtcttatccttggaacaggaactactgaagccgttgtcaaaatttgggat 1255 |||||||||||||||||||| || ||||| || |||||||| |||||||||||||||||| Sbjct: 1213 cacccagatggtcttatcctggggacagggaccactgaagctgttgtcaaaatttgggat 1272 Query: 1256 gtgaagactcagtccaatgttgcaaagtttgaggggcatactggacctgttactgctatg 1315 |||||||| ||||| |||||||||||||||||||||||| |||||| || ||||||||| Sbjct: 1273 gtgaagacgcagtcaaatgttgcaaagtttgaggggcatgttggaccagtgactgctatg 1332 Query: 1316 tccttctctgaaaatggttacttcctggcgactgctgctcttgatggtgtcaaactttgg 1375 |||||||||||||||||||||||||| |||||||||||||| ||||| ||||| |||||| Sbjct: 1333 tccttctctgaaaatggttacttccttgcgactgctgctctcgatggagtcaagctttgg 1392 Query: 1376 gatctaagaaaattgagaaattttaggactttctcgccatatgattcggacacgccgaca 1435 ||||| ||||||| ||||| |||||||| | || || ||||| || |||||||| ||| Sbjct: 1393 gatcttcgaaaattaagaaactttaggacgatatcaccttatgactcagacacgccaaca 1452 Query: 1436 aattctgtggaatttgattttagcggcacctatcttgctgttgctggttcagatattagg 1495 ||||||||||||||||| |||||||| | ||||| ||||||| ||||||||||| ||| Sbjct: 1453 aattctgtggaatttgactttagcggaagttatctagctgttggtggttcagatacaagg 1512 Query: 1496 gtataccaagtagctaatgtcaagaccgaatggaatcttatcaagaccttaccagatgta 1555 || ||||||||||| ||||| ||| | |||||||||| ||||||||||||||||| | Sbjct: 1513 gtttaccaagtagcaaatgttaagcttggatggaatcttgtcaagaccttaccagatttg 1572 Query: 1556 tcaggaacagggaaagtgacctctgcgaagttcggcactgatgctaaatatatcgccgtc 1615 ||||| |||||||||||||| | ||||| ||||| ||||| || || || ||||| Sbjct: 1573 tcaggcacagggaaagtgacaaacgtcaagtttggcaccgatgcgaagtacattgccgta 1632 Query: 1616 ggctctatggaccgtaacctgaggatatttgggcttcctgg---agatgatcaaatgga 1671 || |||||||| |||||||| |||||||||||| ||| || ||||||||||||||| Sbjct: 1633 ggttctatggatcgtaacctacggatatttgggcatccgggagaagatgatcaaatgga 1691
>gb|AY104737.1| Zea mays PCO093291 mRNA sequence Length = 903 Score = 565 bits (285), Expect = e-157 Identities = 504/577 (87%) Strand = Plus / Plus Query: 1095 ccaaggataatacttggtgcttctatgatatttcaactgggtcttgcctctcacaggttg 1154 |||||||||| |||||||||| |||||||||||||| || |||||||| ||||||||| Sbjct: 21 ccaaggataactcttggtgcttatatgatatttcaacaggatcttgcctgacacaggttg 80 Query: 1155 gcgaggcttcaggacaagagggatatacatctgcatctttccacccagatggtcttatcc 1214 |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct: 81 gcgaggcttcaggacaagagggatatacatctgcgtctttccatccagatggtcttatcc 140 Query: 1215 ttggaacaggaactactgaagccgttgtcaaaatttgggatgtgaagactcagtccaatg 1274 ||||||||||||||||||| || ||||| ||||||||||| |||||| ||||||| |||| Sbjct: 141 ttggaacaggaactactgatgctgttgttaaaatttgggacgtgaaggctcagtcaaatg 200 Query: 1275 ttgcaaagtttgaggggcatactggacctgttactgctatgtccttctctgaaaatggtt 1334 | |||||||||||||| ||| ||||| || ||||||||||| |||||||||||||||| Sbjct: 201 tcgcaaagtttgagggtcatgtcggaccagtcactgctatgtctttctctgaaaatggtt 260 Query: 1335 acttcctggcgactgctgctcttgatggtgtcaaactttgggatctaagaaaattgagaa 1394 ||||||| ||||||||||||| ||||||||| |||||||||||||| | ||||| |||| Sbjct: 261 acttcctagcgactgctgctcatgatggtgttaaactttgggatcttcgtaaattaagaa 320 Query: 1395 attttaggactttctcgccatatgattcggacacgccgacaaattctgtggaatttgatt 1454 |||||||||||||||| || ||||||| |||||||| || ||| ||||||||||||||| Sbjct: 321 attttaggactttctctccctatgatttagacacgccaaccaatactgtggaatttgatt 380 Query: 1455 ttagcggcacctatcttgctgttgctggttcagatattagggtataccaagtagctaatg 1514 |||| || | ||||||||| ||| |||||||||||| ||||| |||||||||||||||| Sbjct: 381 ttagtggaaactatcttgccattggtggttcagatataagggtctaccaagtagctaatg 440 Query: 1515 tcaagaccgaatggaatcttatcaagaccttaccagatgtatcaggaacagggaaagtga 1574 | ||| |||||||||||||||||||||| ||||| ||| ||||||||||||||||||| | Sbjct: 441 ttaaggccgaatggaatcttatcaagacattacccgatttatcaggaacagggaaagtaa 500 Query: 1575 cctctgcgaagttcggcactgatgctaaatatatcgccgtcggctctatggaccgtaacc 1634 | || | || ||||| || || ||||| || ||| | || ||||||||||| || | Sbjct: 501 cttccgtaaaattcggagtagacgcgaaatacatagccataggttctatggaccgcaatc 560 Query: 1635 tgaggatatttgggcttcctggagatgatcaaatgga 1671 | |||||||||| || |||||||||||||||||||| Sbjct: 561 tacggatatttggtctccctggagatgatcaaatgga 597
>gb|AC022457.8| Oryza sativa chromosome 10 BAC OSJNBa0006L06 genomic sequence, complete sequence Length = 162339 Score = 182 bits (92), Expect = 3e-42 Identities = 110/116 (94%) Strand = Plus / Minus Query: 1148 caggttggcgaggcttcaggacaagagggatatacatctgcatctttccacccagatggt 1207 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 34574 caggttggcgagtcttcaggacaagagggatatacatctgcatctttccacccagatggt 34515 Query: 1208 cttatccttggaacaggaactactgaagccgttgtcaaaatttgggatgtgaagac 1263 |||||||| || ||||| || |||||||| |||||||||||||||||||||||||| Sbjct: 34514 cttatcctggggacagggaccactgaagctgttgtcaaaatttgggatgtgaagac 34459 Score = 163 bits (82), Expect = 3e-36 Identities = 130/146 (89%) Strand = Plus / Minus Query: 433 ccagcatgatgctgcctgccgtgttatagccagattaaagaaggaaagagatgagtctag 492 |||||||||||||||||||||||||||||| ||||||||||| ||| ||||||| | || Sbjct: 37011 ccagcatgatgctgcctgccgtgttatagctagattaaagaaagaacgagatgaagccag 36952 Query: 493 agcgcttttggctctagctgagagacagattcctgcgtcgatggcgggagttgcacctgc 552 ||| |||||||||| ||||||||||||||||||||| |||||||| |||| ||||||| | Sbjct: 36951 agcacttttggctcaagctgagagacagattcctgcatcgatggcaggagctgcacctac 36892 Query: 553 agctgtcgtttccaatggaaaaagag 578 |||||| || ||||| || ||||||| Sbjct: 36891 agctgttgtctccaacgggaaaagag 36866 Score = 131 bits (66), Expect = 1e-26 Identities = 99/110 (90%) Strand = Plus / Minus Query: 1044 aggttgaagctgttactgtgcatgcgactcagaagtacttcgtgaccgctgccaaggata 1103 |||||||||||||||| || |||||||||||||||||||| ||||| ||| ||||||||| Sbjct: 34795 aggttgaagctgttacagtccatgcgactcagaagtactttgtgactgcttccaaggata 34736 Query: 1104 atacttggtgcttctatgatatttcaactgggtcttgcctctcacaggtt 1153 |||||||||||||||| |||||| || | || ||||||||| |||||||| Sbjct: 34735 atacttggtgcttctacgatattccatcaggatcttgcctcacacaggtt 34686 Score = 127 bits (64), Expect = 2e-25 Identities = 100/112 (89%) Strand = Plus / Minus Query: 704 ccaagtttggcatcaattgatgaactagagaaatatactcagatctctagtcatccactc 763 |||| ||||||||||||||||| | | |||| |||||| |||||||| ||||||||||| Sbjct: 36465 ccaactttggcatcaattgatgcaattgagagatatacccagatctccagtcatccactt 36406 Query: 764 cacaagacaaacaagccaggcattttatctatggatatccatccgtcaaagg 815 |||||||||||||| |||||||| |||||||||||||| ||||| ||||||| Sbjct: 36405 cacaagacaaacaaaccaggcatcttatctatggatattcatccttcaaagg 36354 Score = 119 bits (60), Expect = 4e-23 Identities = 99/112 (88%) Strand = Plus / Minus Query: 587 gatgaaattggccctgatgggaagaagatacgccctggtatcaatcctgtcatgatcgat 646 |||||| |||| || || ||||||||||| || ||||||||||| ||||| ||||| ||| Sbjct: 36769 gatgaagttggaccagacgggaagaagattcgtcctggtatcaaccctgtgatgattgat 36710 Query: 647 gaactaacagagtgtaataccatgctttctgctcagcgtaagaaacggcagg 698 |||||||||||||||||||||||||| ||||| || ||||||||||| |||| Sbjct: 36709 gaactaacagagtgtaataccatgctctctgcgcatcgtaagaaacgacagg 36658 Score = 111 bits (56), Expect = 1e-20 Identities = 71/76 (93%) Strand = Plus / Minus Query: 1266 agtccaatgttgcaaagtttgaggggcatactggacctgttactgctatgtccttctctg 1325 |||| |||||||||||||||||||||||| |||||| || ||||||||||||||||||| Sbjct: 34360 agtcaaatgttgcaaagtttgaggggcatgttggaccagtgactgctatgtccttctctg 34301 Query: 1326 aaaatggttacttcct 1341 |||||||||||||||| Sbjct: 34300 aaaatggttacttcct 34285 Score = 109 bits (55), Expect = 4e-20 Identities = 76/83 (91%) Strand = Plus / Minus Query: 350 gagtgggatgcccttatgctttctaattttgctttggagcagcagcttcacacagcaaga 409 ||||||||||| | |||||||||| |||||||||||||||||||||||| ||||||||| Sbjct: 38807 gagtgggatgctatcatgctttctagttttgctttggagcagcagcttcatacagcaaga 38748 Query: 410 caagaactgagtcatgcgttata 432 |||||||| ||||||||| |||| Sbjct: 38747 caagaacttagtcatgcgctata 38725 Score = 109 bits (55), Expect = 4e-20 Identities = 79/87 (90%) Strand = Plus / Minus Query: 129 tctccggcgaggtgcctgatgagccggtggtatcaaagaggtcggggctcctctttgagc 188 |||||||||||||||| |||||||||||||| || |||| ||| ||||| ||||| |||| Sbjct: 39865 tctccggcgaggtgccggatgagccggtggtgtcgaagaagtccgggcttctcttcgagc 39806 Query: 189 ggcggctcgtcgagcgctacattgagg 215 |||||||||||||||||||||| |||| Sbjct: 39805 ggcggctcgtcgagcgctacatcgagg 39779 Score = 95.6 bits (48), Expect = 6e-16 Identities = 69/76 (90%) Strand = Plus / Minus Query: 213 aggaccacgggaagtgtccagtcacgaaggaggaactctccatggacgacatcgtgctgg 272 ||||||| |||||||| |||||||| |||||||| ||| ||||||||||||||||| || Sbjct: 39671 aggaccatgggaagtgcccagtcaccaaggaggagctcaccatggacgacatcgtggcgg 39612 Query: 273 tgaagaccaacaaggt 288 |||||||||||||||| Sbjct: 39611 tgaagaccaacaaggt 39596 Score = 75.8 bits (38), Expect = 5e-10 Identities = 83/98 (84%) Strand = Plus / Minus Query: 1345 gactgctgctcttgatggtgtcaaactttgggatctaagaaaattgagaaattttaggac 1404 |||||||||||| ||||| ||||| ||||||||||| ||||||| ||||| |||||||| Sbjct: 34203 gactgctgctctcgatggagtcaagctttgggatcttcgaaaattaagaaactttaggac 34144 Query: 1405 tttctcgccatatgattcggacacgccgacaaattctg 1442 | || || ||||| || |||||||| |||||||||| Sbjct: 34143 gatatcaccttatgactcagacacgccaacaaattctg 34106 Score = 75.8 bits (38), Expect = 5e-10 Identities = 56/62 (90%) Strand = Plus / Minus Query: 909 agataaccactttgaaatttgttccacgggacgagcttgtggtaactggatcagcagata 968 ||||||||| ||||||||||||||| ||||| ||||| | ||||||||||||||||||| Sbjct: 35875 agataaccagtttgaaatttgttcctcgggatgagctctttgtaactggatcagcagata 35816 Query: 969 ag 970 || Sbjct: 35815 ag 35814 Score = 73.8 bits (37), Expect = 2e-09 Identities = 61/69 (88%) Strand = Plus / Minus Query: 980 atttggcaagggactgaggagggaaactacagttgcatccatacattgaaagatcatacc 1039 ||||||||||| | ||||||||||| |||| |||||||||||||||||||||||| || Sbjct: 35608 atttggcaaggaagcgaggagggaaattacaattgcatccatacattgaaagatcacact 35549 Query: 1040 gctgaggtt 1048 || |||||| Sbjct: 35548 gccgaggtt 35540 Score = 67.9 bits (34), Expect = 1e-07 Identities = 64/74 (86%) Strand = Plus / Minus Query: 1493 agggtataccaagtagctaatgtcaagaccgaatggaatcttatcaagaccttaccagat 1552 ||||| ||||||||||| ||||| ||| |||||||||||| ||||||||||||||||| Sbjct: 33730 agggtttaccaagtagcaaatgttaagcttgaatggaatcttgtcaagaccttaccagat 33671 Query: 1553 gtatcaggaacagg 1566 | ||||| ||||| Sbjct: 33670 ttgtcaggcacagg 33657 Score = 56.0 bits (28), Expect = 5e-04 Identities = 28/28 (100%) Strand = Plus / Minus Query: 306 tgcaggctgcaagcattcccggactcct 333 |||||||||||||||||||||||||||| Sbjct: 39412 tgcaggctgcaagcattcccggactcct 39385 Score = 52.0 bits (26), Expect = 0.008 Identities = 76/92 (82%), Gaps = 3/92 (3%) Strand = Plus / Minus Query: 1583 aagttcggcactgatgctaaatatatcgccgtcggctctatggaccgtaacctgaggata 1642 ||||| ||||| ||||| || || || ||||| || |||||||| |||||||| ||||| Sbjct: 33544 aagtttggcaccgatgcgaagtacattgccgtaggttctatggatcgtaacctacggata 33485 Query: 1643 tttgggcttcctgg---agatgatcaaatgga 1671 ||||||| ||| || ||||||||||||||| Sbjct: 33484 tttgggcatccgggagaagatgatcaaatgga 33453 Score = 50.1 bits (25), Expect = 0.031 Identities = 43/49 (87%) Strand = Plus / Minus Query: 1442 gtggaatttgattttagcggcacctatcttgctgttgctggttcagata 1490 ||||||||||| |||||||| | ||||| ||||||| ||||||||||| Sbjct: 33872 gtggaatttgactttagcggaagttatctagctgttggtggttcagata 33824
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10 Length = 22685906 Score = 182 bits (92), Expect = 3e-42 Identities = 110/116 (94%) Strand = Plus / Minus Query: 1148 caggttggcgaggcttcaggacaagagggatatacatctgcatctttccacccagatggt 1207 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 16690057 caggttggcgagtcttcaggacaagagggatatacatctgcatctttccacccagatggt 16689998 Query: 1208 cttatccttggaacaggaactactgaagccgttgtcaaaatttgggatgtgaagac 1263 |||||||| || ||||| || |||||||| |||||||||||||||||||||||||| Sbjct: 16689997 cttatcctggggacagggaccactgaagctgttgtcaaaatttgggatgtgaagac 16689942 Score = 163 bits (82), Expect = 3e-36 Identities = 130/146 (89%) Strand = Plus / Minus Query: 433 ccagcatgatgctgcctgccgtgttatagccagattaaagaaggaaagagatgagtctag 492 |||||||||||||||||||||||||||||| ||||||||||| ||| ||||||| | || Sbjct: 16692494 ccagcatgatgctgcctgccgtgttatagctagattaaagaaagaacgagatgaagccag 16692435 Query: 493 agcgcttttggctctagctgagagacagattcctgcgtcgatggcgggagttgcacctgc 552 ||| |||||||||| ||||||||||||||||||||| |||||||| |||| ||||||| | Sbjct: 16692434 agcacttttggctcaagctgagagacagattcctgcatcgatggcaggagctgcacctac 16692375 Query: 553 agctgtcgtttccaatggaaaaagag 578 |||||| || ||||| || ||||||| Sbjct: 16692374 agctgttgtctccaacgggaaaagag 16692349 Score = 131 bits (66), Expect = 1e-26 Identities = 99/110 (90%) Strand = Plus / Minus Query: 1044 aggttgaagctgttactgtgcatgcgactcagaagtacttcgtgaccgctgccaaggata 1103 |||||||||||||||| || |||||||||||||||||||| ||||| ||| ||||||||| Sbjct: 16690278 aggttgaagctgttacagtccatgcgactcagaagtactttgtgactgcttccaaggata 16690219 Query: 1104 atacttggtgcttctatgatatttcaactgggtcttgcctctcacaggtt 1153 |||||||||||||||| |||||| || | || ||||||||| |||||||| Sbjct: 16690218 atacttggtgcttctacgatattccatcaggatcttgcctcacacaggtt 16690169 Score = 127 bits (64), Expect = 2e-25 Identities = 100/112 (89%) Strand = Plus / Minus Query: 704 ccaagtttggcatcaattgatgaactagagaaatatactcagatctctagtcatccactc 763 |||| ||||||||||||||||| | | |||| |||||| |||||||| ||||||||||| Sbjct: 16691948 ccaactttggcatcaattgatgcaattgagagatatacccagatctccagtcatccactt 16691889 Query: 764 cacaagacaaacaagccaggcattttatctatggatatccatccgtcaaagg 815 |||||||||||||| |||||||| |||||||||||||| ||||| ||||||| Sbjct: 16691888 cacaagacaaacaaaccaggcatcttatctatggatattcatccttcaaagg 16691837 Score = 119 bits (60), Expect = 4e-23 Identities = 99/112 (88%) Strand = Plus / Minus Query: 587 gatgaaattggccctgatgggaagaagatacgccctggtatcaatcctgtcatgatcgat 646 |||||| |||| || || ||||||||||| || ||||||||||| ||||| ||||| ||| Sbjct: 16692252 gatgaagttggaccagacgggaagaagattcgtcctggtatcaaccctgtgatgattgat 16692193 Query: 647 gaactaacagagtgtaataccatgctttctgctcagcgtaagaaacggcagg 698 |||||||||||||||||||||||||| ||||| || ||||||||||| |||| Sbjct: 16692192 gaactaacagagtgtaataccatgctctctgcgcatcgtaagaaacgacagg 16692141 Score = 111 bits (56), Expect = 1e-20 Identities = 71/76 (93%) Strand = Plus / Minus Query: 1266 agtccaatgttgcaaagtttgaggggcatactggacctgttactgctatgtccttctctg 1325 |||| |||||||||||||||||||||||| |||||| || ||||||||||||||||||| Sbjct: 16689843 agtcaaatgttgcaaagtttgaggggcatgttggaccagtgactgctatgtccttctctg 16689784 Query: 1326 aaaatggttacttcct 1341 |||||||||||||||| Sbjct: 16689783 aaaatggttacttcct 16689768 Score = 109 bits (55), Expect = 4e-20 Identities = 76/83 (91%) Strand = Plus / Minus Query: 350 gagtgggatgcccttatgctttctaattttgctttggagcagcagcttcacacagcaaga 409 ||||||||||| | |||||||||| |||||||||||||||||||||||| ||||||||| Sbjct: 16694290 gagtgggatgctatcatgctttctagttttgctttggagcagcagcttcatacagcaaga 16694231 Query: 410 caagaactgagtcatgcgttata 432 |||||||| ||||||||| |||| Sbjct: 16694230 caagaacttagtcatgcgctata 16694208 Score = 109 bits (55), Expect = 4e-20 Identities = 79/87 (90%) Strand = Plus / Minus Query: 129 tctccggcgaggtgcctgatgagccggtggtatcaaagaggtcggggctcctctttgagc 188 |||||||||||||||| |||||||||||||| || |||| ||| ||||| ||||| |||| Sbjct: 16695348 tctccggcgaggtgccggatgagccggtggtgtcgaagaagtccgggcttctcttcgagc 16695289 Query: 189 ggcggctcgtcgagcgctacattgagg 215 |||||||||||||||||||||| |||| Sbjct: 16695288 ggcggctcgtcgagcgctacatcgagg 16695262 Score = 95.6 bits (48), Expect = 6e-16 Identities = 69/76 (90%) Strand = Plus / Minus Query: 213 aggaccacgggaagtgtccagtcacgaaggaggaactctccatggacgacatcgtgctgg 272 ||||||| |||||||| |||||||| |||||||| ||| ||||||||||||||||| || Sbjct: 16695154 aggaccatgggaagtgcccagtcaccaaggaggagctcaccatggacgacatcgtggcgg 16695095 Query: 273 tgaagaccaacaaggt 288 |||||||||||||||| Sbjct: 16695094 tgaagaccaacaaggt 16695079 Score = 75.8 bits (38), Expect = 5e-10 Identities = 83/98 (84%) Strand = Plus / Minus Query: 1345 gactgctgctcttgatggtgtcaaactttgggatctaagaaaattgagaaattttaggac 1404 |||||||||||| ||||| ||||| ||||||||||| ||||||| ||||| |||||||| Sbjct: 16689686 gactgctgctctcgatggagtcaagctttgggatcttcgaaaattaagaaactttaggac 16689627 Query: 1405 tttctcgccatatgattcggacacgccgacaaattctg 1442 | || || ||||| || |||||||| |||||||||| Sbjct: 16689626 gatatcaccttatgactcagacacgccaacaaattctg 16689589 Score = 75.8 bits (38), Expect = 5e-10 Identities = 56/62 (90%) Strand = Plus / Minus Query: 909 agataaccactttgaaatttgttccacgggacgagcttgtggtaactggatcagcagata 968 ||||||||| ||||||||||||||| ||||| ||||| | ||||||||||||||||||| Sbjct: 16691358 agataaccagtttgaaatttgttcctcgggatgagctctttgtaactggatcagcagata 16691299 Query: 969 ag 970 || Sbjct: 16691298 ag 16691297 Score = 73.8 bits (37), Expect = 2e-09 Identities = 61/69 (88%) Strand = Plus / Minus Query: 980 atttggcaagggactgaggagggaaactacagttgcatccatacattgaaagatcatacc 1039 ||||||||||| | ||||||||||| |||| |||||||||||||||||||||||| || Sbjct: 16691091 atttggcaaggaagcgaggagggaaattacaattgcatccatacattgaaagatcacact 16691032 Query: 1040 gctgaggtt 1048 || |||||| Sbjct: 16691031 gccgaggtt 16691023 Score = 67.9 bits (34), Expect = 1e-07 Identities = 64/74 (86%) Strand = Plus / Minus Query: 1493 agggtataccaagtagctaatgtcaagaccgaatggaatcttatcaagaccttaccagat 1552 ||||| ||||||||||| ||||| ||| |||||||||||| ||||||||||||||||| Sbjct: 16689213 agggtttaccaagtagcaaatgttaagcttgaatggaatcttgtcaagaccttaccagat 16689154 Query: 1553 gtatcaggaacagg 1566 | ||||| ||||| Sbjct: 16689153 ttgtcaggcacagg 16689140 Score = 56.0 bits (28), Expect = 5e-04 Identities = 28/28 (100%) Strand = Plus / Minus Query: 306 tgcaggctgcaagcattcccggactcct 333 |||||||||||||||||||||||||||| Sbjct: 16694895 tgcaggctgcaagcattcccggactcct 16694868 Score = 52.0 bits (26), Expect = 0.008 Identities = 76/92 (82%), Gaps = 3/92 (3%) Strand = Plus / Minus Query: 1583 aagttcggcactgatgctaaatatatcgccgtcggctctatggaccgtaacctgaggata 1642 ||||| ||||| ||||| || || || ||||| || |||||||| |||||||| ||||| Sbjct: 16689027 aagtttggcaccgatgcgaagtacattgccgtaggttctatggatcgtaacctacggata 16688968 Query: 1643 tttgggcttcctgg---agatgatcaaatgga 1671 ||||||| ||| || ||||||||||||||| Sbjct: 16688967 tttgggcatccgggagaagatgatcaaatgga 16688936 Score = 50.1 bits (25), Expect = 0.031 Identities = 43/49 (87%) Strand = Plus / Minus Query: 1442 gtggaatttgattttagcggcacctatcttgctgttgctggttcagata 1490 ||||||||||| |||||||| | ||||| ||||||| ||||||||||| Sbjct: 16689355 gtggaatttgactttagcggaagttatctagctgttggtggttcagata 16689307
>gb|AY105855.1| Zea mays PCO078279 mRNA sequence Length = 663 Score = 121 bits (61), Expect = 1e-23 Identities = 142/169 (84%) Strand = Plus / Plus Query: 1503 aagtagctaatgtcaagaccgaatggaatcttatcaagaccttaccagatgtatcaggaa 1562 ||||||||||||| ||| ||||||||||||| |||||||| ||||||||| |||| |||| Sbjct: 8 aagtagctaatgttaaggccgaatggaatctcatcaagacattaccagatttatctggaa 67 Query: 1563 cagggaaagtgacctctgcgaagttcggcactgatgctaaatatatcgccgtcggctcta 1622 |||||||||| || || | |||||||| | |||||||| || || ||||| || |||| Sbjct: 68 cagggaaagtaacttcggtaaagttcggagcagatgctaagtacatagccgtaggttcta 127 Query: 1623 tggaccgtaacctgaggatatttgggcttcctggagatgatcaaatgga 1671 ||||||| || || |||||||||| || |||||||| || |||||||| Sbjct: 128 tggaccgcaatctacggatatttggcctccctggagacgaccaaatgga 176 Score = 48.1 bits (24), Expect = 0.12 Identities = 49/56 (87%), Gaps = 1/56 (1%) Strand = Plus / Plus Query: 1842 cattattgtattgtaggtttcactaatt-ttctaatgaggatataatttgttttga 1896 ||||||||||||||||| ||||||||| ||| ||| ||||| |||||||||||| Sbjct: 354 cattattgtattgtaggcctcactaattcgtctgatggggatacaatttgttttga 409
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 63.9 bits (32), Expect = 2e-06 Identities = 68/80 (85%) Strand = Plus / Plus Query: 969 agactgttcggatttggcaagggactgaggagggaaactacagttgcatccatacattga 1028 |||| ||||| |||||||||| || |||| ||||| || | ||||||||| ||||||| Sbjct: 19679473 agacagttcgcatttggcaagagagcgagggtggaaaatataattgcatccacacattga 19679532 Query: 1029 aagatcataccgctgaggtt 1048 |||||||||| ||||||||| Sbjct: 19679533 aagatcatactgctgaggtt 19679552
>dbj|AP004360.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1166B08 Length = 147667 Score = 63.9 bits (32), Expect = 2e-06 Identities = 68/80 (85%) Strand = Plus / Plus Query: 969 agactgttcggatttggcaagggactgaggagggaaactacagttgcatccatacattga 1028 |||| ||||| |||||||||| || |||| ||||| || | ||||||||| ||||||| Sbjct: 28095 agacagttcgcatttggcaagagagcgagggtggaaaatataattgcatccacacattga 28154 Query: 1029 aagatcataccgctgaggtt 1048 |||||||||| ||||||||| Sbjct: 28155 aagatcatactgctgaggtt 28174
>ref|NM_001049798.1| Oryza sativa (japonica cultivar-group) Os01g0538000 (Os01g0538000) mRNA, complete cds Length = 1447 Score = 61.9 bits (31), Expect = 8e-06 Identities = 67/79 (84%) Strand = Plus / Plus Query: 968 aagactgttcggatttggcaagggactgaggagggaaactacagttgcatccatacattg 1027 ||||| ||||| |||||||||| || |||| ||||| || | ||||||||| |||||| Sbjct: 485 aagacagttcgcatttggcaagagagcgagggtggaaaatataattgcatccacacattg 544 Query: 1028 aaagatcataccgctgagg 1046 ||||||||||| ||||||| Sbjct: 545 aaagatcatactgctgagg 563
>dbj|AK072919.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023150A20, full insert sequence Length = 1583 Score = 61.9 bits (31), Expect = 8e-06 Identities = 67/79 (84%) Strand = Plus / Plus Query: 968 aagactgttcggatttggcaagggactgaggagggaaactacagttgcatccatacattg 1027 ||||| ||||| |||||||||| || |||| ||||| || | ||||||||| |||||| Sbjct: 460 aagacagttcgcatttggcaagagagcgagggtggaaaatataattgcatccacacattg 519 Query: 1028 aaagatcataccgctgagg 1046 ||||||||||| ||||||| Sbjct: 520 aaagatcatactgctgagg 538
>dbj|AK064005.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-124-G04, full insert sequence Length = 1579 Score = 61.9 bits (31), Expect = 8e-06 Identities = 67/79 (84%) Strand = Plus / Plus Query: 968 aagactgttcggatttggcaagggactgaggagggaaactacagttgcatccatacattg 1027 ||||| ||||| |||||||||| || |||| ||||| || | ||||||||| |||||| Sbjct: 485 aagacagttcgcatttggcaagagagcgagggtggaaaatataattgcatccacacattg 544 Query: 1028 aaagatcataccgctgagg 1046 ||||||||||| ||||||| Sbjct: 545 aaagatcatactgctgagg 563
>dbj|AK061028.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-204-G09, full insert sequence Length = 1447 Score = 61.9 bits (31), Expect = 8e-06 Identities = 67/79 (84%) Strand = Plus / Plus Query: 968 aagactgttcggatttggcaagggactgaggagggaaactacagttgcatccatacattg 1027 ||||| ||||| |||||||||| || |||| ||||| || | ||||||||| |||||| Sbjct: 485 aagacagttcgcatttggcaagagagcgagggtggaaaatataattgcatccacacattg 544 Query: 1028 aaagatcataccgctgagg 1046 ||||||||||| ||||||| Sbjct: 545 aaagatcatactgctgagg 563
>ref|NM_179876.1| Arabidopsis thaliana nucleotide binding / ubiquitin-protein ligase (AT2G33340) mRNA, complete cds Length = 2003 Score = 60.0 bits (30), Expect = 3e-05 Identities = 45/50 (90%) Strand = Plus / Plus Query: 1304 gttactgctatgtccttctctgaaaatggttacttcctggcgactgctgc 1353 ||||| ||||| || ||||||||||||||||||||||| ||||| ||||| Sbjct: 1335 gttacagctatatctttctctgaaaatggttacttcctcgcgacagctgc 1384
>ref|NM_179875.1| Arabidopsis thaliana nucleotide binding / ubiquitin-protein ligase (AT2G33340) mRNA, complete cds Length = 2087 Score = 60.0 bits (30), Expect = 3e-05 Identities = 45/50 (90%) Strand = Plus / Plus Query: 1304 gttactgctatgtccttctctgaaaatggttacttcctggcgactgctgc 1353 ||||| ||||| || ||||||||||||||||||||||| ||||| ||||| Sbjct: 1335 gttacagctatatctttctctgaaaatggttacttcctcgcgacagctgc 1384
>ref|NM_001036394.1| Arabidopsis thaliana nucleotide binding / ubiquitin-protein ligase (AT2G33340) mRNA, complete cds Length = 2086 Score = 60.0 bits (30), Expect = 3e-05 Identities = 45/50 (90%) Strand = Plus / Plus Query: 1304 gttactgctatgtccttctctgaaaatggttacttcctggcgactgctgc 1353 ||||| ||||| || ||||||||||||||||||||||| ||||| ||||| Sbjct: 1335 gttacagctatatctttctctgaaaatggttacttcctcgcgacagctgc 1384
>gb|AY080868.1| Arabidopsis thaliana At2g33340 mRNA sequence Length = 2055 Score = 60.0 bits (30), Expect = 3e-05 Identities = 45/50 (90%) Strand = Plus / Plus Query: 1304 gttactgctatgtccttctctgaaaatggttacttcctggcgactgctgc 1353 ||||| ||||| || ||||||||||||||||||||||| ||||| ||||| Sbjct: 1336 gttacagctatatctttctctgaaaatggttacttcctcgcgacagctgc 1385 Score = 52.0 bits (26), Expect = 0.008 Identities = 44/50 (88%) Strand = Plus / Plus Query: 1613 gtcggctctatggaccgtaacctgaggatatttgggcttcctggagatga 1662 ||||| || |||||||||||||| |||||||||| |||||||| ||||| Sbjct: 1633 gtcggttcgatggaccgtaacctacggatatttggtcttcctggtgatga 1682
>ref|NM_001056851.1| Oryza sativa (japonica cultivar-group) Os03g0400800 (Os03g0400800) mRNA, complete cds Length = 4386 Score = 58.0 bits (29), Expect = 1e-04 Identities = 62/73 (84%) Strand = Plus / Plus Query: 588 atgaaattggccctgatgggaagaagatacgccctggtatcaatcctgtcatgatcgatg 647 |||||||||| |||||||||||| |||| | |||||||||| ||||| || || |||| Sbjct: 4145 atgaaattggtcctgatgggaaggagattcatcctggtatcacacctgtaatcattgatg 4204 Query: 648 aactaacagagtg 660 |||| |||||||| Sbjct: 4205 aacttacagagtg 4217
>gb|AC084380.9| Oryza sativa chromosome 3 BAC OSJNBa0090P23 genomic sequence, complete sequence Length = 126163 Score = 58.0 bits (29), Expect = 1e-04 Identities = 62/73 (84%) Strand = Plus / Minus Query: 588 atgaaattggccctgatgggaagaagatacgccctggtatcaatcctgtcatgatcgatg 647 |||||||||| |||||||||||| |||| | |||||||||| ||||| || || |||| Sbjct: 21129 atgaaattggtcctgatgggaaggagattcatcctggtatcacacctgtaatcattgatg 21070 Query: 648 aactaacagagtg 660 |||| |||||||| Sbjct: 21069 aacttacagagtg 21057
>ref|XM_862820.1| PREDICTED: Canis familiaris similar to PRP19/PSO4 homolog (Nuclear matrix protein 200) (hPso4), transcript variant 4 (LOC611552), mRNA Length = 2152 Score = 58.0 bits (29), Expect = 1e-04 Identities = 29/29 (100%) Strand = Plus / Plus Query: 431 taccagcatgatgctgcctgccgtgttat 459 ||||||||||||||||||||||||||||| Sbjct: 517 taccagcatgatgctgcctgccgtgttat 545
>ref|XM_862812.1| PREDICTED: Canis familiaris similar to PRP19/PSO4 homolog (Nuclear matrix protein 200) (hPso4), transcript variant 3 (LOC611552), mRNA Length = 2137 Score = 58.0 bits (29), Expect = 1e-04 Identities = 29/29 (100%) Strand = Plus / Plus Query: 431 taccagcatgatgctgcctgccgtgttat 459 ||||||||||||||||||||||||||||| Sbjct: 517 taccagcatgatgctgcctgccgtgttat 545
>ref|XM_862806.1| PREDICTED: Canis familiaris similar to PRP19/PSO4 homolog (Nuclear matrix protein 200) (hPso4), transcript variant 2 (LOC611552), mRNA Length = 2164 Score = 58.0 bits (29), Expect = 1e-04 Identities = 29/29 (100%) Strand = Plus / Plus Query: 431 taccagcatgatgctgcctgccgtgttat 459 ||||||||||||||||||||||||||||| Sbjct: 517 taccagcatgatgctgcctgccgtgttat 545
>ref|XM_848689.1| PREDICTED: Canis familiaris similar to PRP19/PSO4 homolog (Nuclear matrix protein 200) (hPso4), transcript variant 1 (LOC611552), mRNA Length = 2125 Score = 58.0 bits (29), Expect = 1e-04 Identities = 29/29 (100%) Strand = Plus / Plus Query: 431 taccagcatgatgctgcctgccgtgttat 459 ||||||||||||||||||||||||||||| Sbjct: 517 taccagcatgatgctgcctgccgtgttat 545
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 58.0 bits (29), Expect = 1e-04 Identities = 62/73 (84%) Strand = Plus / Minus Query: 588 atgaaattggccctgatgggaagaagatacgccctggtatcaatcctgtcatgatcgatg 647 |||||||||| |||||||||||| |||| | |||||||||| ||||| || || |||| Sbjct: 16090482 atgaaattggtcctgatgggaaggagattcatcctggtatcacacctgtaatcattgatg 16090423 Query: 648 aactaacagagtg 660 |||| |||||||| Sbjct: 16090422 aacttacagagtg 16090410
>gb|AC146759.29| Medicago truncatula clone mth2-173e19, complete sequence Length = 133602 Score = 56.0 bits (28), Expect = 5e-04 Identities = 61/72 (84%) Strand = Plus / Plus Query: 365 atgctttctaattttgctttggagcagcagcttcacacagcaagacaagaactgagtcat 424 ||||| ||||||||||| |||||||||||| | || |||||||| ||||| | |||||| Sbjct: 126920 atgctatctaattttgcattggagcagcagttgcatacagcaaggcaagagttaagtcat 126979 Query: 425 gcgttataccag 436 || |||||||| Sbjct: 126980 gctctataccag 126991 Score = 50.1 bits (25), Expect = 0.031 Identities = 46/53 (86%) Strand = Plus / Plus Query: 1178 tatacatctgcatctttccacccagatggtcttatccttggaacaggaactac 1230 |||||||||||| |||| || || ||||||||||| |||||||| || ||||| Sbjct: 132279 tatacatctgcagcttttcatcccgatggtcttattcttggaactggcactac 132331
>ref|NM_100330.2| Arabidopsis thaliana nucleotide binding / ubiquitin-protein ligase (AT1G04510) mRNA, complete cds Length = 1981 Score = 54.0 bits (27), Expect = 0.002 Identities = 42/47 (89%) Strand = Plus / Plus Query: 1319 ttctctgaaaatggttacttcctggcgactgctgctcttgatggtgt 1365 ||||||||||| ||||| ||||| ||||||||||| || |||||||| Sbjct: 1384 ttctctgaaaacggttatttccttgcgactgctgcactggatggtgt 1430
>ref|NM_001035881.1| Arabidopsis thaliana nucleotide binding / ubiquitin-protein ligase (AT1G04510) mRNA, complete cds Length = 1981 Score = 54.0 bits (27), Expect = 0.002 Identities = 42/47 (89%) Strand = Plus / Plus Query: 1319 ttctctgaaaatggttacttcctggcgactgctgctcttgatggtgt 1365 ||||||||||| ||||| ||||| ||||||||||| || |||||||| Sbjct: 1384 ttctctgaaaacggttatttccttgcgactgctgcactggatggtgt 1430
>gb|AY142564.1| Arabidopsis thaliana putative pre-mRNA splicing factor PRP19 (At1g04510) mRNA, complete cds Length = 1603 Score = 54.0 bits (27), Expect = 0.002 Identities = 42/47 (89%) Strand = Plus / Plus Query: 1319 ttctctgaaaatggttacttcctggcgactgctgctcttgatggtgt 1365 ||||||||||| ||||| ||||| ||||||||||| || |||||||| Sbjct: 1210 ttctctgaaaacggttatttccttgcgactgctgcactggatggtgt 1256
>gb|AY039940.1| Arabidopsis thaliana putative pre-mRNA splicing factor PRP19 (At1g04510) mRNA, complete cds Length = 1959 Score = 54.0 bits (27), Expect = 0.002 Identities = 42/47 (89%) Strand = Plus / Plus Query: 1319 ttctctgaaaatggttacttcctggcgactgctgctcttgatggtgt 1365 ||||||||||| ||||| ||||| ||||||||||| || |||||||| Sbjct: 1371 ttctctgaaaacggttatttccttgcgactgctgcactggatggtgt 1417
>dbj|AK221436.1| Arabidopsis thaliana mRNA for putative pre-mRNA splicing factor PRP19, partial cds, clone: RAFL06-12-F17 Length = 1482 Score = 54.0 bits (27), Expect = 0.002 Identities = 42/47 (89%) Strand = Plus / Plus Query: 1319 ttctctgaaaatggttacttcctggcgactgctgctcttgatggtgt 1365 ||||||||||| ||||| ||||| ||||||||||| || |||||||| Sbjct: 906 ttctctgaaaacggttatttccttgcgactgctgcactggatggtgt 952
>dbj|AK060300.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-006-H04, full insert sequence Length = 1241 Score = 54.0 bits (27), Expect = 0.002 Identities = 33/35 (94%) Strand = Plus / Plus Query: 1012 ttgcatccatacattgaaagatcataccgctgagg 1046 ||||||||| ||||||||||||||||| ||||||| Sbjct: 160 ttgcatccacacattgaaagatcatactgctgagg 194
>gb|AY814567.1| Schistosoma japonicum SJCHGC06229 protein mRNA, complete cds Length = 1756 Score = 52.0 bits (26), Expect = 0.008 Identities = 53/62 (85%) Strand = Plus / Plus Query: 404 gcaagacaagaactgagtcatgcgttataccagcatgatgctgcctgccgtgttatagcc 463 |||||||| |||||| ||||| ||||||||||||||||| || || |||||||| ||| Sbjct: 328 gcaagacaggaactgtcacatgctttataccagcatgatgccgcttgtcgtgttatcgcc 387 Query: 464 ag 465 || Sbjct: 388 ag 389
>gb|AC002332.3| Arabidopsis thaliana chromosome 2 clone F4P9 map ve015, complete sequence Length = 152593 Score = 52.0 bits (26), Expect = 0.008 Identities = 35/38 (92%) Strand = Plus / Minus Query: 1304 gttactgctatgtccttctctgaaaatggttacttcct 1341 ||||| ||||| || ||||||||||||||||||||||| Sbjct: 31219 gttacagctatatctttctctgaaaatggttacttcct 31182
>dbj|D50556.1|RICFNR Rice mRNA for ferredoxin-nitrite reductase, complete cds Length = 2410 Score = 52.0 bits (26), Expect = 0.008 Identities = 76/92 (82%), Gaps = 3/92 (3%) Strand = Plus / Plus Query: 1583 aagttcggcactgatgctaaatatatcgccgtcggctctatggaccgtaacctgaggata 1642 ||||| ||||| ||||| || || || ||||| || |||||||| |||||||| ||||| Sbjct: 2034 aagtttggcaccgatgcgaagtacattgccgtaggttctatggatcgtaacctacggata 2093 Query: 1643 tttgggcttcctgg---agatgatcaaatgga 1671 ||||||| ||| || ||||||||||||||| Sbjct: 2094 tttgggcatccgggagaagatgatcaaatgga 2125
>gb|AC131109.3| Mus musculus BAC clone RP23-362M7 from chromosome 18, complete sequence Length = 177690 Score = 46.1 bits (23), Expect = 0.49 Identities = 32/35 (91%) Strand = Plus / Minus Query: 1193 ttccacccagatggtcttatccttggaacaggaac 1227 |||||||| ||||| |||||| ||||||||||||| Sbjct: 141739 ttccaccctgatgggcttatctttggaacaggaac 141705
>gb|AC125245.4| Homo sapiens BAC clone RP11-236P13 from 4, complete sequence Length = 135923 Score = 46.1 bits (23), Expect = 0.49 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1648 gcttcctggagatgatcaaatgg 1670 ||||||||||||||||||||||| Sbjct: 45319 gcttcctggagatgatcaaatgg 45341
>gb|AC112227.4| Homo sapiens BAC clone RP13-552G12 from 4, complete sequence Length = 151609 Score = 46.1 bits (23), Expect = 0.49 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1648 gcttcctggagatgatcaaatgg 1670 ||||||||||||||||||||||| Sbjct: 26155 gcttcctggagatgatcaaatgg 26177
>gb|AC134856.3| Mus musculus BAC clone RP23-291B16 from 18, complete sequence Length = 210961 Score = 46.1 bits (23), Expect = 0.49 Identities = 32/35 (91%) Strand = Plus / Minus Query: 1193 ttccacccagatggtcttatccttggaacaggaac 1227 |||||||| ||||| |||||| ||||||||||||| Sbjct: 29013 ttccaccctgatgggcttatctttggaacaggaac 28979
>ref|XM_738015.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000000.01.0) partial mRNA Length = 1062 Score = 46.1 bits (23), Expect = 0.49 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1657 agatgatcaaatggatgatgatg 1679 ||||||||||||||||||||||| Sbjct: 861 agatgatcaaatggatgatgatg 883
>gb|AC187168.7| Glycine max clone gmp1-12a14, complete sequence Length = 151798 Score = 44.1 bits (22), Expect = 1.9 Identities = 22/22 (100%) Strand = Plus / Minus Query: 364 tatgctttctaattttgctttg 385 |||||||||||||||||||||| Sbjct: 49242 tatgctttctaattttgctttg 49221
>gb|U23412.1| Caenorhabditis elegans cosmid T10F2, complete sequence Length = 12957 Score = 44.1 bits (22), Expect = 1.9 Identities = 58/70 (82%) Strand = Plus / Minus Query: 1193 ttccacccagatggtcttatccttggaacaggaactactgaagccgttgtcaaaatttgg 1252 ||||| || ||||||||||| ||||||| ||| || | || |||||||| || |||||| Sbjct: 11477 ttccatcctgatggtcttatttttggaactggagctgcggatgccgttgtgaagatttgg 11418 Query: 1253 gatgtgaaga 1262 ||| |||||| Sbjct: 11417 gatttgaaga 11408
>ref|NM_065695.2| Caenorhabditis elegans T10F2.4 (T10F2.4) mRNA, complete cds Length = 1905 Score = 44.1 bits (22), Expect = 1.9 Identities = 58/70 (82%) Strand = Plus / Plus Query: 1193 ttccacccagatggtcttatccttggaacaggaactactgaagccgttgtcaaaatttgg 1252 ||||| || ||||||||||| ||||||| ||| || | || |||||||| || |||||| Sbjct: 1041 ttccatcctgatggtcttatttttggaactggagctgcggatgccgttgtgaagatttgg 1100 Query: 1253 gatgtgaaga 1262 ||| |||||| Sbjct: 1101 gatttgaaga 1110
>emb|AL353664.14| Human DNA sequence from clone RP11-140B17 on chromosome 10, complete sequence Length = 79943 Score = 44.1 bits (22), Expect = 1.9 Identities = 22/22 (100%) Strand = Plus / Minus Query: 775 caagccaggcattttatctatg 796 |||||||||||||||||||||| Sbjct: 2474 caagccaggcattttatctatg 2453
>ref|NM_001039331.1| Gallus gallus PRP19/PSO4 pre-mRNA processing factor 19 homolog (S. cerevisiae) (PRPF19), mRNA emb|AJ719482.1| Gallus gallus mRNA for hypothetical protein, clone 2m2 Length = 1987 Score = 44.1 bits (22), Expect = 1.9 Identities = 25/26 (96%) Strand = Plus / Plus Query: 431 taccagcatgatgctgcctgccgtgt 456 |||||||| ||||||||||||||||| Sbjct: 420 taccagcacgatgctgcctgccgtgt 445
>gb|U21322.1| Caenorhabditis elegans cosmid K10D2, complete sequence Length = 32542 Score = 44.1 bits (22), Expect = 1.9 Identities = 58/70 (82%) Strand = Plus / Minus Query: 1193 ttccacccagatggtcttatccttggaacaggaactactgaagccgttgtcaaaatttgg 1252 ||||| || ||||||||||| ||||||| ||| || | || |||||||| || |||||| Sbjct: 3720 ttccatcctgatggtcttatttttggaactggagctgcggatgccgttgtgaagatttgg 3661 Query: 1253 gatgtgaaga 1262 ||| |||||| Sbjct: 3660 gatttgaaga 3651
>emb|CR388492.1| Gallus gallus finished cDNA, clone ChEST583i1 Length = 731 Score = 44.1 bits (22), Expect = 1.9 Identities = 25/26 (96%) Strand = Plus / Plus Query: 431 taccagcatgatgctgcctgccgtgt 456 |||||||| ||||||||||||||||| Sbjct: 428 taccagcacgatgctgcctgccgtgt 453
>emb|AL645853.12| Mouse DNA sequence from clone RP23-329L1 on chromosome 11, complete sequence Length = 94538 Score = 44.1 bits (22), Expect = 1.9 Identities = 22/22 (100%) Strand = Plus / Plus Query: 565 caatggaaaaagagcaatggag 586 |||||||||||||||||||||| Sbjct: 30721 caatggaaaaagagcaatggag 30742
>gb|AC182582.3| Pan troglodytes BAC clone CH251-716H14 from chromosome 17, complete sequence Length = 206366 Score = 42.1 bits (21), Expect = 7.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 1862 cactaattttctaatgaggatataatttg 1890 ||||||| |||||||||||||| |||||| Sbjct: 127339 cactaatattctaatgaggatacaatttg 127367
>ref|XM_001060328.1| PREDICTED: Rattus norvegicus IBR domain containing 3 (predicted) (Ibrdc3_predicted), mRNA Length = 2005 Score = 42.1 bits (21), Expect = 7.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 29 gccaccactgccaccgccagc 49 ||||||||||||||||||||| Sbjct: 1308 gccaccactgccaccgccagc 1288
>ref|XM_233761.4| PREDICTED: Rattus norvegicus IBR domain containing 3 (predicted) (Ibrdc3_predicted), mRNA Length = 2584 Score = 42.1 bits (21), Expect = 7.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 29 gccaccactgccaccgccagc 49 ||||||||||||||||||||| Sbjct: 1887 gccaccactgccaccgccagc 1867
>gb|AC022795.9| Homo sapiens chromosome 18, clone RP11-254G11, complete sequence Length = 158003 Score = 42.1 bits (21), Expect = 7.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1501 ccaagtagctaatgtcaagac 1521 ||||||||||||||||||||| Sbjct: 55741 ccaagtagctaatgtcaagac 55761
>dbj|AK143134.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched library, clone:E130113E23 product:unclassifiable, full insert sequence Length = 1630 Score = 42.1 bits (21), Expect = 7.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 764 cacaagacaaacaagccaggc 784 ||||||||||||||||||||| Sbjct: 392 cacaagacaaacaagccaggc 372
>dbj|AK133783.1| Mus musculus 8 days embryo whole body cDNA, RIKEN full-length enriched library, clone:5730412M20 product:telomerase reverse transcriptase, full insert sequence Length = 2664 Score = 42.1 bits (21), Expect = 7.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1336 cttcctggcgactgctgctcttgat 1360 ||||||||||||| ||||||||||| Sbjct: 775 cttcctggcgactactgctcttgat 751
>gb|AC005342.1| Homo sapiens 12p13.3 PAC RPCI5-1096D14 (Roswell Park Cancer Institute Human PAC Library) complete sequence Length = 220257 Score = 42.1 bits (21), Expect = 7.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 956 ggatcagcagataagactgtt 976 ||||||||||||||||||||| Sbjct: 151745 ggatcagcagataagactgtt 151725
>gb|AC012364.7| Homo sapiens BAC clone RP11-444D15 from 2, complete sequence Length = 155943 Score = 42.1 bits (21), Expect = 7.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 27 gcgccaccactgccaccgcca 47 ||||||||||||||||||||| Sbjct: 39606 gcgccaccactgccaccgcca 39626
>ref|NM_009354.1| Mus musculus telomerase reverse transcriptase (Tert), mRNA gb|AF051911.1|AF051911 Mus musculus telomerase reverse transcriptase mRNA, complete cds Length = 3426 Score = 42.1 bits (21), Expect = 7.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1336 cttcctggcgactgctgctcttgat 1360 ||||||||||||| ||||||||||| Sbjct: 684 cttcctggcgactactgctcttgat 660
>emb|BX679673.6| Mouse DNA sequence from clone RP23-252K15 on chromosome X, complete sequence Length = 81270 Score = 42.1 bits (21), Expect = 7.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 589 tgaaattggccctgatgggaa 609 ||||||||||||||||||||| Sbjct: 54588 tgaaattggccctgatgggaa 54608
>emb|AL928979.4| Zebrafish DNA sequence from clone DKEY-113G17, complete sequence Length = 193205 Score = 42.1 bits (21), Expect = 7.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1874 aatgaggatataatttgtttt 1894 ||||||||||||||||||||| Sbjct: 171889 aatgaggatataatttgtttt 171869
>dbj|AP000722.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-675M1, complete sequence Length = 177882 Score = 42.1 bits (21), Expect = 7.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1238 gttgtcaaaatttgggatgtg 1258 ||||||||||||||||||||| Sbjct: 108584 gttgtcaaaatttgggatgtg 108604
>gb|AF121949.1|AF121949 Mus musculus telomerase reverse transcriptase (Tert) gene, partial cds Length = 7498 Score = 42.1 bits (21), Expect = 7.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1336 cttcctggcgactgctgctcttgat 1360 ||||||||||||| ||||||||||| Sbjct: 5243 cttcctggcgactactgctcttgat 5219
>emb|AL121652.2|CNS01DS2 BAC sequence from the SPG4 candidate region at 2p21-2p22 BAC 1057B06 of library RPCI-11 from chromosome 2 of Homo sapiens (Human) Length = 187182 Score = 42.1 bits (21), Expect = 7.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 27 gcgccaccactgccaccgcca 47 ||||||||||||||||||||| Sbjct: 168794 gcgccaccactgccaccgcca 168814
>gb|AC158359.2| Mus musculus BAC clone RP23-412H3 from chromosome 13, complete sequence Length = 210045 Score = 42.1 bits (21), Expect = 7.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1336 cttcctggcgactgctgctcttgat 1360 ||||||||||||| ||||||||||| Sbjct: 75818 cttcctggcgactactgctcttgat 75794
>emb|AL807747.10| Mouse DNA sequence from clone RP23-300N21 on chromosome 4, complete sequence Length = 228003 Score = 42.1 bits (21), Expect = 7.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 764 cacaagacaaacaagccaggc 784 ||||||||||||||||||||| Sbjct: 52019 cacaagacaaacaagccaggc 51999
>gb|AF073311.1|AF073311 Mus musculus telomerase catalytic subunit mRNA, complete cds Length = 3369 Score = 42.1 bits (21), Expect = 7.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1336 cttcctggcgactgctgctcttgat 1360 ||||||||||||| ||||||||||| Sbjct: 655 cttcctggcgactactgctcttgat 631
>emb|AL139099.3|CNS01DX7 Human chromosome 14 DNA sequence BAC R-649E7 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 157010 Score = 42.1 bits (21), Expect = 7.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 899 cactccaagaagataaccact 919 ||||||||||||||||||||| Sbjct: 92249 cactccaagaagataaccact 92229
>gb|AC036178.11| Homo sapiens chromosome 18, clone RP11-666N19, complete sequence Length = 135640 Score = 42.1 bits (21), Expect = 7.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1501 ccaagtagctaatgtcaagac 1521 ||||||||||||||||||||| Sbjct: 118446 ccaagtagctaatgtcaagac 118466 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 367,224,127 Number of extensions: 19380350 Number of successful extensions: 112409 Number of sequences better than 10.0: 66 Number of HSP's gapped: 112400 Number of HSP's successfully gapped: 103 Length of query: 2006 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1983 Effective length of database: 18,503,978,556 Effective search space: 36693389476548 Effective search space used: 36693389476548 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 15 (30.2 bits)
