ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | FLbaf93c21 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF182197.1|AF182197 Hordeum vulgare RNase S-like protein precursor (rsh1) gene, complete cds Length = 3758 Score = 1059 bits (534), Expect = 0.0 Identities = 534/534 (100%) Strand = Plus / Plus Query: 540 agggatcaagcccgactttggcctgtacagcttggagaagatcaagaaggccatccaggc 599 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2876 agggatcaagcccgactttggcctgtacagcttggagaagatcaagaaggccatccaggc 2935 Query: 600 gggcaccggtgtggcgccgctgatccagtgtagcaaagggccgttcgataagttccagct 659 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2936 gggcaccggtgtggcgccgctgatccagtgtagcaaagggccgttcgataagttccagct 2995 Query: 660 gtaccagatcttcatctgcgtggccgaggacgccaaaacgctcatcgagtgcccgaaacc 719 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2996 gtaccagatcttcatctgcgtggccgaggacgccaaaacgctcatcgagtgcccgaaacc 3055 Query: 720 gcagaagttcacgtgctccgacgagatcctcttccaccccttcaagaagtggatgctaaa 779 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3056 gcagaagttcacgtgctccgacgagatcctcttccaccccttcaagaagtggatgctaaa 3115 Query: 780 gcaggccgcgtcctccgtgtcctttgccgaagcatttgagatggccggcgccgccatggg 839 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3116 gcaggccgcgtcctccgtgtcctttgccgaagcatttgagatggccggcgccgccatggg 3175 Query: 840 atactgagctacagctgcagattggtagccgatcaggcctcgtcttgtgggttgcgttcc 899 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3176 atactgagctacagctgcagattggtagccgatcaggcctcgtcttgtgggttgcgttcc 3235 Query: 900 aatgaataattaatacgtactagtatatgcatggaattatgttctttccttttttcagat 959 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3236 aatgaataattaatacgtactagtatatgcatggaattatgttctttccttttttcagat 3295 Query: 960 gttcatctcgctcgtgttgttatatgatgataataataatgtaacccgagggtaccgcat 1019 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3296 gttcatctcgctcgtgttgttatatgatgataataataatgtaacccgagggtaccgcat 3355 Query: 1020 attgattactcagtcgatctgtaacgctttcatgaataataccgtgttacctcc 1073 |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3356 attgattactcagtcgatctgtaacgctttcatgaataataccgtgttacctcc 3409 Score = 383 bits (193), Expect = e-103 Identities = 193/193 (100%) Strand = Plus / Plus Query: 350 agattctgggaatcagcggtctaaggcagtactggagcaacatcaagtgccccagcaaca 409 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2611 agattctgggaatcagcggtctaaggcagtactggagcaacatcaagtgccccagcaaca 2670 Query: 410 acggccagaagagctggaagagcgcctggaagacgtccggcgtctgctccggccttgacg 469 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2671 acggccagaagagctggaagagcgcctggaagacgtccggcgtctgctccggccttgacg 2730 Query: 470 acaaggcttacttccaagccgccatcgccctccgtagcaagatcaaccccctctctcgcc 529 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2731 acaaggcttacttccaagccgccatcgccctccgtagcaagatcaaccccctctctcgcc 2790 Query: 530 tcgtttccaaagg 542 ||||||||||||| Sbjct: 2791 tcgtttccaaagg 2803 Score = 371 bits (187), Expect = 4e-99 Identities = 187/187 (100%) Strand = Plus / Plus Query: 3 agtcctcaccaaggcacttctgggtgtccaaataagcgcactcgtgagaaacgttgaaag 62 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1758 agtcctcaccaaggcacttctgggtgtccaaataagcgcactcgtgagaaacgttgaaag 1817 Query: 63 gagtgaaatcaagcaaggtttcggtatggctttcaggagagcactgttgtgccttcttgg 122 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1818 gagtgaaatcaagcaaggtttcggtatggctttcaggagagcactgttgtgccttcttgg 1877 Query: 123 catgctgatagcttcctctgccattgccgtttctgattctggtatctactaccagattgg 182 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1878 catgctgatagcttcctctgccattgccgtttctgattctggtatctactaccagattgg 1937 Query: 183 tttgatg 189 ||||||| Sbjct: 1938 tttgatg 1944 Score = 323 bits (163), Expect = 8e-85 Identities = 163/163 (100%) Strand = Plus / Plus Query: 189 gtggccgggagcatactgtgtgcagaccaccggcggatgctgcatgcccaagagccccat 248 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2359 gtggccgggagcatactgtgtgcagaccaccggcggatgctgcatgcccaagagccccat 2418 Query: 249 cgtgccggcggccgacttctacgtctcgggctttactgtcttgaacgcgacgaccgacgc 308 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2419 cgtgccggcggccgacttctacgtctcgggctttactgtcttgaacgcgacgaccgacgc 2478 Query: 309 ccccgagaccagctgcagcagtactcctttcaactccgacgag 351 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2479 ccccgagaccagctgcagcagtactcctttcaactccgacgag 2521 Score = 216 bits (109), Expect = 1e-52 Identities = 133/141 (94%) Strand = Plus / Plus Query: 709 tgcccgaaaccgcagaagttcacgtgctccgacgagatcctcttccaccccttcaagaag 768 |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 3614 tgcccgaaaccgcaaaagttcacgtgctccgacgagatcatcttccaccccttcaagaag 3673 Query: 769 tggatgctaaagcaggccgcgtcctccgtgtcctttgccgaagcatttgagatggccggc 828 ||||||||||||||| |||||||||| ||||||| || |||||||| |||||||||||| Sbjct: 3674 tggatgctaaagcagtccgcgtcctcggtgtcctacgctgaagcattcgagatggccggc 3733 Query: 829 gccgccatgggatactgagct 849 ||||||||||||||||||||| Sbjct: 3734 gccgccatgggatactgagct 3754
>emb|CT834731.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA002F18, full insert sequence Length = 1104 Score = 212 bits (107), Expect = 2e-51 Identities = 331/405 (81%), Gaps = 3/405 (0%) Strand = Plus / Plus Query: 375 gcagtactggagcaacatcaagtgccccagcaacaacggccagaagagctggaagagcgc 434 ||||||||||| |||||||| |||||||||||| | |||||||||| ||||||||| ||| Sbjct: 366 gcagtactggaacaacatcaggtgccccagcaagagcggccagaagggctggaagaacgc 425 Query: 435 ctggaagacgtccggcgtctgctccggccttgacgacaaggcttacttccaagccgccat 494 ||| ||||||||||||||||||||| ||| ||| | || |||||| | ||||| | Sbjct: 426 gtgggagacgtccggcgtctgctccgacctcaccgagagcgcctacttcgacaccgccct 485 Query: 495 cgccctccgtagcaagatcaaccccctctctcgcctcgtttccaaagggatcaagcccga 554 ||||||||| ||||||||||||||| ||||||||||| ||| || || ||||| || Sbjct: 486 cgccctccgcgacaagatcaaccccctgtctcgcctcgtcagcaacggtattaagccgga 545 Query: 555 ctttggcctgtacagcttggagaagatcaagaaggccatccaggcgggcaccggtgtggc 614 |||||| ||||||||| || ||||||||||| ||| ||| ||| ||| | ||| | | | Sbjct: 546 ctttgggctgtacagcgtgaagaagatcaaggaggtgatcgaggaggggatcggcgcgcc 605 Query: 615 gccgctgatccagtgtagcaaagggccgttcgataagttccagctgtaccagatcttcat 674 | ||||||||||||| ||||| || |||||| | ||||||||||| |||||||| | | | Sbjct: 606 ggcgctgatccagtgcagcaagggcccgttcaacaagttccagctataccagatatacgt 665 Query: 675 ctgcgtggccgaggacgccaaaacgctcatcgagtgcccgaaaccgcagaa---gttcac 731 |||||| || ||||||||||| ||| || | |||||||| | ||| ||| || ||| Sbjct: 666 ctgcgtcgcggaggacgccaagacgttcgtggagtgccccagcccgaggaagccgtacac 725 Query: 732 gtgctccgacgagatcctcttccaccccttcaagaagtggatgct 776 ||| |||||| |||||||||||||| ||||||||||||||||| Sbjct: 726 ctgcggcgacgacatcctcttccaccctttcaagaagtggatgct 770 Score = 71.9 bits (36), Expect = 5e-09 Identities = 90/108 (83%) Strand = Plus / Plus Query: 166 atctactaccagattggtttgatgtggccgggagcatactgtgtgcagaccaccggcgga 225 |||| |||||||||| ||| |||||||||||||| ||||| | |||||| | | |||| Sbjct: 157 atcttctaccagattactttcatgtggccgggagcgtactgcgcgcagacgaaggccgga 216 Query: 226 tgctgcatgcccaagagccccatcgtgccggcggccgacttctacgtc 273 ||||||||||| |||| | | ||| ||||||| |||||||||||||| Sbjct: 217 tgctgcatgccgaagaccgacgtcgcgccggcgtccgacttctacgtc 264
>ref|NM_001070329.1| Oryza sativa (japonica cultivar-group) Os09g0538000 (Os09g0538000) mRNA, complete cds Length = 1173 Score = 204 bits (103), Expect = 5e-49 Identities = 330/405 (81%), Gaps = 3/405 (0%) Strand = Plus / Plus Query: 375 gcagtactggagcaacatcaagtgccccagcaacaacggccagaagagctggaagagcgc 434 ||||||||||| |||||||| |||||||||||| | |||||||||| ||||||||| ||| Sbjct: 368 gcagtactggaacaacatcaggtgccccagcaagagcggccagaagggctggaagaacgc 427 Query: 435 ctggaagacgtccggcgtctgctccggccttgacgacaaggcttacttccaagccgccat 494 ||| ||||||||||||||||||||| ||| ||| | || ||||| | ||||| | Sbjct: 428 gtgggagacgtccggcgtctgctccgacctcaccgagagcgcctactttgacaccgccct 487 Query: 495 cgccctccgtagcaagatcaaccccctctctcgcctcgtttccaaagggatcaagcccga 554 ||||||||| ||||||||||||||| ||||||||||| ||| || || ||||| || Sbjct: 488 cgccctccgcgacaagatcaaccccctttctcgcctcgtcagcaacggtattaagccgga 547 Query: 555 ctttggcctgtacagcttggagaagatcaagaaggccatccaggcgggcaccggtgtggc 614 |||||| ||||||||| || ||||||||||| ||| ||| ||| ||| | ||| | | | Sbjct: 548 ctttgggctgtacagcgtgaagaagatcaaggaggtgatcgaggaggggatcggcgcgcc 607 Query: 615 gccgctgatccagtgtagcaaagggccgttcgataagttccagctgtaccagatcttcat 674 | ||||||||||||| ||||| || |||||| | ||||||||||| |||||||| | | | Sbjct: 608 ggcgctgatccagtgcagcaagggcccgttcaacaagttccagctataccagatatacgt 667 Query: 675 ctgcgtggccgaggacgccaaaacgctcatcgagtgcccgaaaccgcagaa---gttcac 731 |||||| || ||||||||||| ||| || | |||||||| | ||| ||| || ||| Sbjct: 668 ctgcgtcgcggaggacgccaagacgttcgtggagtgccccagcccgaggaagccgtacac 727 Query: 732 gtgctccgacgagatcctcttccaccccttcaagaagtggatgct 776 ||| |||||| |||||||||||||| ||||||||||||||||| Sbjct: 728 ctgcggcgacgacatcctcttccaccctttcaagaagtggatgct 772 Score = 71.9 bits (36), Expect = 5e-09 Identities = 90/108 (83%) Strand = Plus / Plus Query: 166 atctactaccagattggtttgatgtggccgggagcatactgtgtgcagaccaccggcgga 225 |||| |||||||||| ||| |||||||||||||| ||||| | |||||| | | |||| Sbjct: 159 atcttctaccagattactttcatgtggccgggagcgtactgcgcgcagacgaaggccgga 218 Query: 226 tgctgcatgcccaagagccccatcgtgccggcggccgacttctacgtc 273 ||||||||||| |||| | | ||| ||||||| |||||||||||||| Sbjct: 219 tgctgcatgccgaagaccgacgtcgcgccggcgtccgacttctacgtc 266
>dbj|AK109411.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-E09, full insert sequence Length = 1114 Score = 204 bits (103), Expect = 5e-49 Identities = 330/405 (81%), Gaps = 3/405 (0%) Strand = Plus / Plus Query: 375 gcagtactggagcaacatcaagtgccccagcaacaacggccagaagagctggaagagcgc 434 ||||||||||| |||||||| |||||||||||| | |||||||||| ||||||||| ||| Sbjct: 368 gcagtactggaacaacatcaggtgccccagcaagagcggccagaagggctggaagaacgc 427 Query: 435 ctggaagacgtccggcgtctgctccggccttgacgacaaggcttacttccaagccgccat 494 ||| ||||||||||||||||||||| ||| ||| | || ||||| | ||||| | Sbjct: 428 gtgggagacgtccggcgtctgctccgacctcaccgagagcgcctactttgacaccgccct 487 Query: 495 cgccctccgtagcaagatcaaccccctctctcgcctcgtttccaaagggatcaagcccga 554 ||||||||| ||||||||||||||| ||||||||||| ||| || || ||||| || Sbjct: 488 cgccctccgcgacaagatcaaccccctttctcgcctcgtcagcaacggtattaagccgga 547 Query: 555 ctttggcctgtacagcttggagaagatcaagaaggccatccaggcgggcaccggtgtggc 614 |||||| ||||||||| || ||||||||||| ||| ||| ||| ||| | ||| | | | Sbjct: 548 ctttgggctgtacagcgtgaagaagatcaaggaggtgatcgaggaggggatcggcgcgcc 607 Query: 615 gccgctgatccagtgtagcaaagggccgttcgataagttccagctgtaccagatcttcat 674 | ||||||||||||| ||||| || |||||| | ||||||||||| |||||||| | | | Sbjct: 608 ggcgctgatccagtgcagcaagggcccgttcaacaagttccagctataccagatatacgt 667 Query: 675 ctgcgtggccgaggacgccaaaacgctcatcgagtgcccgaaaccgcagaa---gttcac 731 |||||| || ||||||||||| ||| || | |||||||| | ||| ||| || ||| Sbjct: 668 ctgcgtcgcggaggacgccaagacgttcgtggagtgccccagcccgaggaagccgtacac 727 Query: 732 gtgctccgacgagatcctcttccaccccttcaagaagtggatgct 776 ||| |||||| |||||||||||||| ||||||||||||||||| Sbjct: 728 ctgcggcgacgacatcctcttccaccctttcaagaagtggatgct 772 Score = 71.9 bits (36), Expect = 5e-09 Identities = 90/108 (83%) Strand = Plus / Plus Query: 166 atctactaccagattggtttgatgtggccgggagcatactgtgtgcagaccaccggcgga 225 |||| |||||||||| ||| |||||||||||||| ||||| | |||||| | | |||| Sbjct: 159 atcttctaccagattactttcatgtggccgggagcgtactgcgcgcagacgaaggccgga 218 Query: 226 tgctgcatgcccaagagccccatcgtgccggcggccgacttctacgtc 273 ||||||||||| |||| | | ||| ||||||| |||||||||||||| Sbjct: 219 tgctgcatgccgaagaccgacgtcgcgccggcgtccgacttctacgtc 266
>dbj|AK104648.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-H05, full insert sequence Length = 1114 Score = 204 bits (103), Expect = 5e-49 Identities = 330/405 (81%), Gaps = 3/405 (0%) Strand = Plus / Plus Query: 375 gcagtactggagcaacatcaagtgccccagcaacaacggccagaagagctggaagagcgc 434 ||||||||||| |||||||| |||||||||||| | |||||||||| ||||||||| ||| Sbjct: 368 gcagtactggaacaacatcaggtgccccagcaagagcggccagaagggctggaagaacgc 427 Query: 435 ctggaagacgtccggcgtctgctccggccttgacgacaaggcttacttccaagccgccat 494 ||| ||||||||||||||||||||| ||| ||| | || ||||| | ||||| | Sbjct: 428 gtgggagacgtccggcgtctgctccgacctcaccgagagcgcctactttgacaccgccct 487 Query: 495 cgccctccgtagcaagatcaaccccctctctcgcctcgtttccaaagggatcaagcccga 554 ||||||||| ||||||||||||||| ||||||||||| ||| || || ||||| || Sbjct: 488 cgccctccgcgacaagatcaaccccctttctcgcctcgtcagcaacggtattaagccgga 547 Query: 555 ctttggcctgtacagcttggagaagatcaagaaggccatccaggcgggcaccggtgtggc 614 |||||| ||||||||| || ||||||||||| ||| ||| ||| ||| | ||| | | | Sbjct: 548 ctttgggctgtacagcgtgaagaagatcaaggaggtgatcgaggaggggatcggcgcgcc 607 Query: 615 gccgctgatccagtgtagcaaagggccgttcgataagttccagctgtaccagatcttcat 674 | ||||||||||||| ||||| || |||||| | ||||||||||| |||||||| | | | Sbjct: 608 ggcgctgatccagtgcagcaagggcccgttcaacaagttccagctataccagatatacgt 667 Query: 675 ctgcgtggccgaggacgccaaaacgctcatcgagtgcccgaaaccgcagaa---gttcac 731 |||||| || ||||||||||| ||| || | |||||||| | ||| ||| || ||| Sbjct: 668 ctgcgtcgcggaggacgccaagacgttcgtggagtgccccagcccgaggaagccgtacac 727 Query: 732 gtgctccgacgagatcctcttccaccccttcaagaagtggatgct 776 ||| |||||| |||||||||||||| ||||||||||||||||| Sbjct: 728 ctgcggcgacgacatcctcttccaccctttcaagaagtggatgct 772 Score = 71.9 bits (36), Expect = 5e-09 Identities = 90/108 (83%) Strand = Plus / Plus Query: 166 atctactaccagattggtttgatgtggccgggagcatactgtgtgcagaccaccggcgga 225 |||| |||||||||| ||| |||||||||||||| ||||| | |||||| | | |||| Sbjct: 159 atcttctaccagattactttcatgtggccgggagcgtactgcgcgcagacgaaggccgga 218 Query: 226 tgctgcatgcccaagagccccatcgtgccggcggccgacttctacgtc 273 ||||||||||| |||| | | ||| ||||||| |||||||||||||| Sbjct: 219 tgctgcatgccgaagaccgacgtcgcgccggcgtccgacttctacgtc 266
>dbj|AK104456.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-A10, full insert sequence Length = 1077 Score = 204 bits (103), Expect = 5e-49 Identities = 330/405 (81%), Gaps = 3/405 (0%) Strand = Plus / Plus Query: 375 gcagtactggagcaacatcaagtgccccagcaacaacggccagaagagctggaagagcgc 434 ||||||||||| |||||||| |||||||||||| | |||||||||| ||||||||| ||| Sbjct: 363 gcagtactggaacaacatcaggtgccccagcaagagcggccagaagggctggaagaacgc 422 Query: 435 ctggaagacgtccggcgtctgctccggccttgacgacaaggcttacttccaagccgccat 494 ||| ||||||||||||||||||||| ||| ||| | || ||||| | ||||| | Sbjct: 423 gtgggagacgtccggcgtctgctccgacctcaccgagagcgcctactttgacaccgccct 482 Query: 495 cgccctccgtagcaagatcaaccccctctctcgcctcgtttccaaagggatcaagcccga 554 ||||||||| ||||||||||||||| ||||||||||| ||| || || ||||| || Sbjct: 483 cgccctccgcgacaagatcaaccccctttctcgcctcgtcagcaacggtattaagccgga 542 Query: 555 ctttggcctgtacagcttggagaagatcaagaaggccatccaggcgggcaccggtgtggc 614 |||||| ||||||||| || ||||||||||| ||| ||| ||| ||| | ||| | | | Sbjct: 543 ctttgggctgtacagcgtgaagaagatcaaggaggtgatcgaggaggggatcggcgcgcc 602 Query: 615 gccgctgatccagtgtagcaaagggccgttcgataagttccagctgtaccagatcttcat 674 | ||||||||||||| ||||| || |||||| | ||||||||||| |||||||| | | | Sbjct: 603 ggcgctgatccagtgcagcaagggcccgttcaacaagttccagctataccagatatacgt 662 Query: 675 ctgcgtggccgaggacgccaaaacgctcatcgagtgcccgaaaccgcagaa---gttcac 731 |||||| || ||||||||||| ||| || | |||||||| | ||| ||| || ||| Sbjct: 663 ctgcgtcgcggaggacgccaagacgttcgtggagtgccccagcccgaggaagccgtacac 722 Query: 732 gtgctccgacgagatcctcttccaccccttcaagaagtggatgct 776 ||| |||||| |||||||||||||| ||||||||||||||||| Sbjct: 723 ctgcggcgacgacatcctcttccaccctttcaagaagtggatgct 767 Score = 71.9 bits (36), Expect = 5e-09 Identities = 90/108 (83%) Strand = Plus / Plus Query: 166 atctactaccagattggtttgatgtggccgggagcatactgtgtgcagaccaccggcgga 225 |||| |||||||||| ||| |||||||||||||| ||||| | |||||| | | |||| Sbjct: 154 atcttctaccagattactttcatgtggccgggagcgtactgcgcgcagacgaaggccgga 213 Query: 226 tgctgcatgcccaagagccccatcgtgccggcggccgacttctacgtc 273 ||||||||||| |||| | | ||| ||||||| |||||||||||||| Sbjct: 214 tgctgcatgccgaagaccgacgtcgcgccggcgtccgacttctacgtc 261
>dbj|AK104390.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-201-H04, full insert sequence Length = 1085 Score = 204 bits (103), Expect = 5e-49 Identities = 330/405 (81%), Gaps = 3/405 (0%) Strand = Plus / Plus Query: 375 gcagtactggagcaacatcaagtgccccagcaacaacggccagaagagctggaagagcgc 434 ||||||||||| |||||||| |||||||||||| | |||||||||| ||||||||| ||| Sbjct: 368 gcagtactggaacaacatcaggtgccccagcaagagcggccagaagggctggaagaacgc 427 Query: 435 ctggaagacgtccggcgtctgctccggccttgacgacaaggcttacttccaagccgccat 494 ||| ||||||||||||||||||||| ||| ||| | || ||||| | ||||| | Sbjct: 428 gtgggagacgtccggcgtctgctccgacctcaccgagagcgcctactttgacaccgccct 487 Query: 495 cgccctccgtagcaagatcaaccccctctctcgcctcgtttccaaagggatcaagcccga 554 ||||||||| ||||||||||||||| ||||||||||| ||| || || ||||| || Sbjct: 488 cgccctccgcgacaagatcaaccccctttctcgcctcgtcagcaacggtattaagccgga 547 Query: 555 ctttggcctgtacagcttggagaagatcaagaaggccatccaggcgggcaccggtgtggc 614 |||||| ||||||||| || ||||||||||| ||| ||| ||| ||| | ||| | | | Sbjct: 548 ctttgggctgtacagcgtgaagaagatcaaggaggtgatcgaggaggggatcggcgcgcc 607 Query: 615 gccgctgatccagtgtagcaaagggccgttcgataagttccagctgtaccagatcttcat 674 | ||||||||||||| ||||| || |||||| | ||||||||||| |||||||| | | | Sbjct: 608 ggcgctgatccagtgcagcaagggcccgttcaacaagttccagctataccagatatacgt 667 Query: 675 ctgcgtggccgaggacgccaaaacgctcatcgagtgcccgaaaccgcagaa---gttcac 731 |||||| || ||||||||||| ||| || | |||||||| | ||| ||| || ||| Sbjct: 668 ctgcgtcgcggaggacgccaagacgttcgtggagtgccccagcccgaggaagccgtacac 727 Query: 732 gtgctccgacgagatcctcttccaccccttcaagaagtggatgct 776 ||| |||||| |||||||||||||| ||||||||||||||||| Sbjct: 728 ctgcggcgacgacatcctcttccaccctttcaagaagtggatgct 772 Score = 71.9 bits (36), Expect = 5e-09 Identities = 90/108 (83%) Strand = Plus / Plus Query: 166 atctactaccagattggtttgatgtggccgggagcatactgtgtgcagaccaccggcgga 225 |||| |||||||||| ||| |||||||||||||| ||||| | |||||| | | |||| Sbjct: 159 atcttctaccagattactttcatgtggccgggagcgtactgcgcgcagacgaaggccgga 218 Query: 226 tgctgcatgcccaagagccccatcgtgccggcggccgacttctacgtc 273 ||||||||||| |||| | | ||| ||||||| |||||||||||||| Sbjct: 219 tgctgcatgccgaagaccgacgtcgcgccggcgtccgacttctacgtc 266
>dbj|AK104263.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-D05, full insert sequence Length = 1114 Score = 204 bits (103), Expect = 5e-49 Identities = 330/405 (81%), Gaps = 3/405 (0%) Strand = Plus / Plus Query: 375 gcagtactggagcaacatcaagtgccccagcaacaacggccagaagagctggaagagcgc 434 ||||||||||| |||||||| |||||||||||| | |||||||||| ||||||||| ||| Sbjct: 368 gcagtactggaacaacatcaggtgccccagcaagagcggccagaagggctggaagaacgc 427 Query: 435 ctggaagacgtccggcgtctgctccggccttgacgacaaggcttacttccaagccgccat 494 ||| ||||||||||||||||||||| ||| ||| | || ||||| | ||||| | Sbjct: 428 gtgggagacgtccggcgtctgctccgacctcaccgagagcgcctactttgacaccgccct 487 Query: 495 cgccctccgtagcaagatcaaccccctctctcgcctcgtttccaaagggatcaagcccga 554 ||||||||| ||||||||||||||| ||||||||||| ||| || || ||||| || Sbjct: 488 cgccctccgcgacaagatcaaccccctttctcgcctcgtcagcaacggtattaagccgga 547 Query: 555 ctttggcctgtacagcttggagaagatcaagaaggccatccaggcgggcaccggtgtggc 614 |||||| ||||||||| || ||||||||||| ||| ||| ||| ||| | ||| | | | Sbjct: 548 ctttgggctgtacagcgtgaagaagatcaaggaggtgatcgaggaggggatcggcgcgcc 607 Query: 615 gccgctgatccagtgtagcaaagggccgttcgataagttccagctgtaccagatcttcat 674 | ||||||||||||| ||||| || |||||| | ||||||||||| |||||||| | | | Sbjct: 608 ggcgctgatccagtgcagcaagggcccgttcaacaagttccagctataccagatatacgt 667 Query: 675 ctgcgtggccgaggacgccaaaacgctcatcgagtgcccgaaaccgcagaa---gttcac 731 |||||| || ||||||||||| ||| || | |||||||| | ||| ||| || ||| Sbjct: 668 ctgcgtcgcggaggacgccaagacgttcgtggagtgccccagcccgaggaagccgtacac 727 Query: 732 gtgctccgacgagatcctcttccaccccttcaagaagtggatgct 776 ||| |||||| |||||||||||||| ||||||||||||||||| Sbjct: 728 ctgcggcgacgacatcctcttccaccctttcaagaagtggatgct 772 Score = 71.9 bits (36), Expect = 5e-09 Identities = 90/108 (83%) Strand = Plus / Plus Query: 166 atctactaccagattggtttgatgtggccgggagcatactgtgtgcagaccaccggcgga 225 |||| |||||||||| ||| |||||||||||||| ||||| | |||||| | | |||| Sbjct: 159 atcttctaccagattactttcatgtggccgggagcgtactgcgcgcagacgaaggccgga 218 Query: 226 tgctgcatgcccaagagccccatcgtgccggcggccgacttctacgtc 273 ||||||||||| |||| | | ||| ||||||| |||||||||||||| Sbjct: 219 tgctgcatgccgaagaccgacgtcgcgccggcgtccgacttctacgtc 266
>dbj|AK104261.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-B09, full insert sequence Length = 1140 Score = 204 bits (103), Expect = 5e-49 Identities = 330/405 (81%), Gaps = 3/405 (0%) Strand = Plus / Plus Query: 375 gcagtactggagcaacatcaagtgccccagcaacaacggccagaagagctggaagagcgc 434 ||||||||||| |||||||| |||||||||||| | |||||||||| ||||||||| ||| Sbjct: 368 gcagtactggaacaacatcaggtgccccagcaagagcggccagaagggctggaagaacgc 427 Query: 435 ctggaagacgtccggcgtctgctccggccttgacgacaaggcttacttccaagccgccat 494 ||| ||||||||||||||||||||| ||| ||| | || ||||| | ||||| | Sbjct: 428 gtgggagacgtccggcgtctgctccgacctcaccgagagcgcctactttgacaccgccct 487 Query: 495 cgccctccgtagcaagatcaaccccctctctcgcctcgtttccaaagggatcaagcccga 554 ||||||||| ||||||||||||||| ||||||||||| ||| || || ||||| || Sbjct: 488 cgccctccgcgacaagatcaaccccctttctcgcctcgtcagcaacggtattaagccgga 547 Query: 555 ctttggcctgtacagcttggagaagatcaagaaggccatccaggcgggcaccggtgtggc 614 |||||| ||||||||| || ||||||||||| ||| ||| ||| ||| | ||| | | | Sbjct: 548 ctttgggctgtacagcgtgaagaagatcaaggaggtgatcgaggaggggatcggcgcgcc 607 Query: 615 gccgctgatccagtgtagcaaagggccgttcgataagttccagctgtaccagatcttcat 674 | ||||||||||||| ||||| || |||||| | ||||||||||| |||||||| | | | Sbjct: 608 ggcgctgatccagtgcagcaagggcccgttcaacaagttccagctataccagatatacgt 667 Query: 675 ctgcgtggccgaggacgccaaaacgctcatcgagtgcccgaaaccgcagaa---gttcac 731 |||||| || ||||||||||| ||| || | |||||||| | ||| ||| || ||| Sbjct: 668 ctgcgtcgcggaggacgccaagacgttcgtggagtgccccagcccgaggaagccgtacac 727 Query: 732 gtgctccgacgagatcctcttccaccccttcaagaagtggatgct 776 ||| |||||| |||||||||||||| ||||||||||||||||| Sbjct: 728 ctgcggcgacgacatcctcttccaccctttcaagaagtggatgct 772 Score = 71.9 bits (36), Expect = 5e-09 Identities = 90/108 (83%) Strand = Plus / Plus Query: 166 atctactaccagattggtttgatgtggccgggagcatactgtgtgcagaccaccggcgga 225 |||| |||||||||| ||| |||||||||||||| ||||| | |||||| | | |||| Sbjct: 159 atcttctaccagattactttcatgtggccgggagcgtactgcgcgcagacgaaggccgga 218 Query: 226 tgctgcatgcccaagagccccatcgtgccggcggccgacttctacgtc 273 ||||||||||| |||| | | ||| ||||||| |||||||||||||| Sbjct: 219 tgctgcatgccgaagaccgacgtcgcgccggcgtccgacttctacgtc 266
>dbj|AK104237.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-307-H08, full insert sequence Length = 1173 Score = 204 bits (103), Expect = 5e-49 Identities = 330/405 (81%), Gaps = 3/405 (0%) Strand = Plus / Plus Query: 375 gcagtactggagcaacatcaagtgccccagcaacaacggccagaagagctggaagagcgc 434 ||||||||||| |||||||| |||||||||||| | |||||||||| ||||||||| ||| Sbjct: 368 gcagtactggaacaacatcaggtgccccagcaagagcggccagaagggctggaagaacgc 427 Query: 435 ctggaagacgtccggcgtctgctccggccttgacgacaaggcttacttccaagccgccat 494 ||| ||||||||||||||||||||| ||| ||| | || ||||| | ||||| | Sbjct: 428 gtgggagacgtccggcgtctgctccgacctcaccgagagcgcctactttgacaccgccct 487 Query: 495 cgccctccgtagcaagatcaaccccctctctcgcctcgtttccaaagggatcaagcccga 554 ||||||||| ||||||||||||||| ||||||||||| ||| || || ||||| || Sbjct: 488 cgccctccgcgacaagatcaaccccctttctcgcctcgtcagcaacggtattaagccgga 547 Query: 555 ctttggcctgtacagcttggagaagatcaagaaggccatccaggcgggcaccggtgtggc 614 |||||| ||||||||| || ||||||||||| ||| ||| ||| ||| | ||| | | | Sbjct: 548 ctttgggctgtacagcgtgaagaagatcaaggaggtgatcgaggaggggatcggcgcgcc 607 Query: 615 gccgctgatccagtgtagcaaagggccgttcgataagttccagctgtaccagatcttcat 674 | ||||||||||||| ||||| || |||||| | ||||||||||| |||||||| | | | Sbjct: 608 ggcgctgatccagtgcagcaagggcccgttcaacaagttccagctataccagatatacgt 667 Query: 675 ctgcgtggccgaggacgccaaaacgctcatcgagtgcccgaaaccgcagaa---gttcac 731 |||||| || ||||||||||| ||| || | |||||||| | ||| ||| || ||| Sbjct: 668 ctgcgtcgcggaggacgccaagacgttcgtggagtgccccagcccgaggaagccgtacac 727 Query: 732 gtgctccgacgagatcctcttccaccccttcaagaagtggatgct 776 ||| |||||| |||||||||||||| ||||||||||||||||| Sbjct: 728 ctgcggcgacgacatcctcttccaccctttcaagaagtggatgct 772 Score = 71.9 bits (36), Expect = 5e-09 Identities = 90/108 (83%) Strand = Plus / Plus Query: 166 atctactaccagattggtttgatgtggccgggagcatactgtgtgcagaccaccggcgga 225 |||| |||||||||| ||| |||||||||||||| ||||| | |||||| | | |||| Sbjct: 159 atcttctaccagattactttcatgtggccgggagcgtactgcgcgcagacgaaggccgga 218 Query: 226 tgctgcatgcccaagagccccatcgtgccggcggccgacttctacgtc 273 ||||||||||| |||| | | ||| ||||||| |||||||||||||| Sbjct: 219 tgctgcatgccgaagaccgacgtcgcgccggcgtccgacttctacgtc 266
>dbj|AK061442.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-307-C07, full insert sequence Length = 1151 Score = 204 bits (103), Expect = 5e-49 Identities = 330/405 (81%), Gaps = 3/405 (0%) Strand = Plus / Plus Query: 375 gcagtactggagcaacatcaagtgccccagcaacaacggccagaagagctggaagagcgc 434 ||||||||||| |||||||| |||||||||||| | |||||||||| ||||||||| ||| Sbjct: 368 gcagtactggaacaacatcaggtgccccagcaagagcggccagaagggctggaagaacgc 427 Query: 435 ctggaagacgtccggcgtctgctccggccttgacgacaaggcttacttccaagccgccat 494 ||| ||||||||||||||||||||| ||| ||| | || ||||| | ||||| | Sbjct: 428 gtgggagacgtccggcgtctgctccgacctcaccgagagcgcctactttgacaccgccct 487 Query: 495 cgccctccgtagcaagatcaaccccctctctcgcctcgtttccaaagggatcaagcccga 554 ||||||||| ||||||||||||||| ||||||||||| ||| || || ||||| || Sbjct: 488 cgccctccgcgacaagatcaaccccctttctcgcctcgtcagcaacggtattaagccgga 547 Query: 555 ctttggcctgtacagcttggagaagatcaagaaggccatccaggcgggcaccggtgtggc 614 |||||| ||||||||| || ||||||||||| ||| ||| ||| ||| | ||| | | | Sbjct: 548 ctttgggctgtacagcgtgaagaagatcaaggaggtgatcgaggaggggatcggcgcgcc 607 Query: 615 gccgctgatccagtgtagcaaagggccgttcgataagttccagctgtaccagatcttcat 674 | ||||||||||||| ||||| || |||||| | ||||||||||| |||||||| | | | Sbjct: 608 ggcgctgatccagtgcagcaagggcccgttcaacaagttccagctataccagatatacgt 667 Query: 675 ctgcgtggccgaggacgccaaaacgctcatcgagtgcccgaaaccgcagaa---gttcac 731 |||||| || ||||||||||| ||| || | |||||||| | ||| ||| || ||| Sbjct: 668 ctgcgtcgcggaggacgccaagacgttcgtggagtgccccagcccgaggaagccgtacac 727 Query: 732 gtgctccgacgagatcctcttccaccccttcaagaagtggatgct 776 ||| |||||| |||||||||||||| ||||||||||||||||| Sbjct: 728 ctgcggcgacgacatcctcttccaccctttcaagaagtggatgct 772 Score = 71.9 bits (36), Expect = 5e-09 Identities = 90/108 (83%) Strand = Plus / Plus Query: 166 atctactaccagattggtttgatgtggccgggagcatactgtgtgcagaccaccggcgga 225 |||| |||||||||| ||| |||||||||||||| ||||| | |||||| | | |||| Sbjct: 159 atcttctaccagattactttcatgtggccgggagcgtactgcgcgcagacgaaggccgga 218 Query: 226 tgctgcatgcccaagagccccatcgtgccggcggccgacttctacgtc 273 ||||||||||| |||| | | ||| ||||||| |||||||||||||| Sbjct: 219 tgctgcatgccgaagaccgacgtcgcgccggcgtccgacttctacgtc 266
>dbj|AK060036.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-A10, full insert sequence Length = 1127 Score = 204 bits (103), Expect = 5e-49 Identities = 330/405 (81%), Gaps = 3/405 (0%) Strand = Plus / Plus Query: 375 gcagtactggagcaacatcaagtgccccagcaacaacggccagaagagctggaagagcgc 434 ||||||||||| |||||||| |||||||||||| | |||||||||| ||||||||| ||| Sbjct: 344 gcagtactggaacaacatcaggtgccccagcaagagcggccagaagggctggaagaacgc 403 Query: 435 ctggaagacgtccggcgtctgctccggccttgacgacaaggcttacttccaagccgccat 494 ||| ||||||||||||||||||||| ||| ||| | || ||||| | ||||| | Sbjct: 404 gtgggagacgtccggcgtctgctccgacctcaccgagagcgcctactttgacaccgccct 463 Query: 495 cgccctccgtagcaagatcaaccccctctctcgcctcgtttccaaagggatcaagcccga 554 ||||||||| ||||||||||||||| ||||||||||| ||| || || ||||| || Sbjct: 464 cgccctccgcgacaagatcaaccccctttctcgcctcgtcagcaacggtattaagccgga 523 Query: 555 ctttggcctgtacagcttggagaagatcaagaaggccatccaggcgggcaccggtgtggc 614 |||||| ||||||||| || ||||||||||| ||| ||| ||| ||| | ||| | | | Sbjct: 524 ctttgggctgtacagcgtgaagaagatcaaggaggtgatcgaggaggggatcggcgcgcc 583 Query: 615 gccgctgatccagtgtagcaaagggccgttcgataagttccagctgtaccagatcttcat 674 | ||||||||||||| ||||| || |||||| | ||||||||||| |||||||| | | | Sbjct: 584 ggcgctgatccagtgcagcaagggcccgttcaacaagttccagctataccagatatacgt 643 Query: 675 ctgcgtggccgaggacgccaaaacgctcatcgagtgcccgaaaccgcagaa---gttcac 731 |||||| || ||||||||||| ||| || | |||||||| | ||| ||| || ||| Sbjct: 644 ctgcgtcgcggaggacgccaagacgttcgtggagtgccccagcccgaggaagccgtacac 703 Query: 732 gtgctccgacgagatcctcttccaccccttcaagaagtggatgct 776 ||| |||||| |||||||||||||| ||||||||||||||||| Sbjct: 704 ctgcggcgacgacatcctcttccaccctttcaagaagtggatgct 748 Score = 56.0 bits (28), Expect = 3e-04 Identities = 64/76 (84%) Strand = Plus / Plus Query: 166 atctactaccagattggtttgatgtggccgggagcatactgtgtgcagaccaccggcgga 225 |||| |||||||||| ||| |||||||||||||| ||||| | |||||| | | |||| Sbjct: 159 atcttctaccagattactttcatgtggccgggagcgtactgcgcgcagacgaaggccgga 218 Query: 226 tgctgcatgcccaaga 241 ||||||||||| |||| Sbjct: 219 tgctgcatgccgaaga 234
>dbj|AK059757.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-D06, full insert sequence Length = 1173 Score = 204 bits (103), Expect = 5e-49 Identities = 330/405 (81%), Gaps = 3/405 (0%) Strand = Plus / Plus Query: 375 gcagtactggagcaacatcaagtgccccagcaacaacggccagaagagctggaagagcgc 434 ||||||||||| |||||||| |||||||||||| | |||||||||| ||||||||| ||| Sbjct: 368 gcagtactggaacaacatcaggtgccccagcaagagcggccagaagggctggaagaacgc 427 Query: 435 ctggaagacgtccggcgtctgctccggccttgacgacaaggcttacttccaagccgccat 494 ||| ||||||||||||||||||||| ||| ||| | || ||||| | ||||| | Sbjct: 428 gtgggagacgtccggcgtctgctccgacctcaccgagagcgcctactttgacaccgccct 487 Query: 495 cgccctccgtagcaagatcaaccccctctctcgcctcgtttccaaagggatcaagcccga 554 ||||||||| ||||||||||||||| ||||||||||| ||| || || ||||| || Sbjct: 488 cgccctccgcgacaagatcaaccccctttctcgcctcgtcagcaacggtattaagccgga 547 Query: 555 ctttggcctgtacagcttggagaagatcaagaaggccatccaggcgggcaccggtgtggc 614 |||||| ||||||||| || ||||||||||| ||| ||| ||| ||| | ||| | | | Sbjct: 548 ctttgggctgtacagcgtgaagaagatcaaggaggtgatcgaggaggggatcggcgcgcc 607 Query: 615 gccgctgatccagtgtagcaaagggccgttcgataagttccagctgtaccagatcttcat 674 | ||||||||||||| ||||| || |||||| | ||||||||||| |||||||| | | | Sbjct: 608 ggcgctgatccagtgcagcaagggcccgttcaacaagttccagctataccagatatacgt 667 Query: 675 ctgcgtggccgaggacgccaaaacgctcatcgagtgcccgaaaccgcagaa---gttcac 731 |||||| || ||||||||||| ||| || | |||||||| | ||| ||| || ||| Sbjct: 668 ctgcgtcgcggaggacgccaagacgttcgtggagtgccccagcccgaggaagccgtacac 727 Query: 732 gtgctccgacgagatcctcttccaccccttcaagaagtggatgct 776 ||| |||||| |||||||||||||| ||||||||||||||||| Sbjct: 728 ctgcggcgacgacatcctcttccaccctttcaagaagtggatgct 772 Score = 71.9 bits (36), Expect = 5e-09 Identities = 90/108 (83%) Strand = Plus / Plus Query: 166 atctactaccagattggtttgatgtggccgggagcatactgtgtgcagaccaccggcgga 225 |||| |||||||||| ||| |||||||||||||| ||||| | |||||| | | |||| Sbjct: 159 atcttctaccagattactttcatgtggccgggagcgtactgcgcgcagacgaaggccgga 218 Query: 226 tgctgcatgcccaagagccccatcgtgccggcggccgacttctacgtc 273 ||||||||||| |||| | | ||| ||||||| |||||||||||||| Sbjct: 219 tgctgcatgccgaagaccgacgtcgcgccggcgtccgacttctacgtc 266
>dbj|AK119171.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-H08, full insert sequence Length = 1096 Score = 196 bits (99), Expect = 1e-46 Identities = 330/405 (81%), Gaps = 4/405 (0%) Strand = Plus / Plus Query: 375 gcagtactggagcaacatcaagtgccccagcaacaacggccagaagagctggaagagcgc 434 ||||||||||| |||||||| |||||||||||| | |||||||||| ||||||||| ||| Sbjct: 368 gcagtactggaacaacatcaggtgccccagcaagagcggccagaagggctggaagaacgc 427 Query: 435 ctggaagacgtccggcgtctgctccggccttgacgacaaggcttacttccaagccgccat 494 ||| ||||||||||||||||||||| ||| ||| | || ||||| | ||||| | Sbjct: 428 gtgggagacgtccggcgtctgctccgacctcaccgagagcgcctactttgacaccgccct 487 Query: 495 cgccctccgtagcaagatcaaccccctctctcgcctcgtttccaaagggatcaagcccga 554 ||||||||| ||||||||||||||| ||||||||||| | || |||| ||||| || Sbjct: 488 cgccctccgcgacaagatcaaccccctttctcgcctcgtcagc-aacggattaagccgga 546 Query: 555 ctttggcctgtacagcttggagaagatcaagaaggccatccaggcgggcaccggtgtggc 614 |||||| ||||||||| || ||||||||||| ||| ||| ||| ||| | ||| | | | Sbjct: 547 ctttgggctgtacagcgtgaagaagatcaaggaggtgatcgaggaggggatcggcgcgcc 606 Query: 615 gccgctgatccagtgtagcaaagggccgttcgataagttccagctgtaccagatcttcat 674 | ||||||||||||| ||||| || |||||| | ||||||||||| |||||||| | | | Sbjct: 607 ggcgctgatccagtgcagcaagggcccgttcaacaagttccagctataccagatatacgt 666 Query: 675 ctgcgtggccgaggacgccaaaacgctcatcgagtgcccgaaaccgcagaa---gttcac 731 |||||| || ||||||||||| ||| || | |||||||| | ||| ||| || ||| Sbjct: 667 ctgcgtcgcggaggacgccaagacgttcgtggagtgccccagcccgaggaagccgtacac 726 Query: 732 gtgctccgacgagatcctcttccaccccttcaagaagtggatgct 776 ||| |||||| |||||||||||||| ||||||||||||||||| Sbjct: 727 ctgcggcgacgacatcctcttccaccctttcaagaagtggatgct 771 Score = 71.9 bits (36), Expect = 5e-09 Identities = 90/108 (83%) Strand = Plus / Plus Query: 166 atctactaccagattggtttgatgtggccgggagcatactgtgtgcagaccaccggcgga 225 |||| |||||||||| ||| |||||||||||||| ||||| | |||||| | | |||| Sbjct: 159 atcttctaccagattactttcatgtggccgggagcgtactgcgcgcagacgaaggccgga 218 Query: 226 tgctgcatgcccaagagccccatcgtgccggcggccgacttctacgtc 273 ||||||||||| |||| | | ||| ||||||| |||||||||||||| Sbjct: 219 tgctgcatgccgaagaccgacgtcgcgccggcgtccgacttctacgtc 266
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9 Length = 22696651 Score = 117 bits (59), Expect = 9e-23 Identities = 134/159 (84%) Strand = Plus / Minus Query: 375 gcagtactggagcaacatcaagtgccccagcaacaacggccagaagagctggaagagcgc 434 ||||||||||| |||||||| |||||||||||| | |||||||||| ||||||||| ||| Sbjct: 20864782 gcagtactggaacaacatcaggtgccccagcaagagcggccagaagggctggaagaacgc 20864723 Query: 435 ctggaagacgtccggcgtctgctccggccttgacgacaaggcttacttccaagccgccat 494 ||| ||||||||||||||||||||| ||| ||| | || ||||| | ||||| | Sbjct: 20864722 gtgggagacgtccggcgtctgctccgacctcaccgagagcgcctactttgacaccgccct 20864663 Query: 495 cgccctccgtagcaagatcaaccccctctctcgcctcgt 533 ||||||||| ||||||||||||||| ||||||||||| Sbjct: 20864662 cgccctccgcgacaagatcaaccccctttctcgcctcgt 20864624 Score = 109 bits (55), Expect = 2e-20 Identities = 189/233 (81%), Gaps = 3/233 (1%) Strand = Plus / Minus Query: 547 aagcccgactttggcctgtacagcttggagaagatcaagaaggccatccaggcgggcacc 606 ||||| |||||||| ||||||||| || ||||||||||| ||| ||| ||| ||| | | Sbjct: 20864459 aagccggactttgggctgtacagcgtgaagaagatcaaggaggtgatcgaggaggggatc 20864400 Query: 607 ggtgtggcgccgctgatccagtgtagcaaagggccgttcgataagttccagctgtaccag 666 || | | || ||||||||||||| ||||| || |||||| | ||||||||||| |||||| Sbjct: 20864399 ggcgcgccggcgctgatccagtgcagcaagggcccgttcaacaagttccagctataccag 20864340 Query: 667 atcttcatctgcgtggccgaggacgccaaaacgctcatcgagtgcccgaaaccgcagaa- 725 || | | ||||||| || ||||||||||| ||| || | |||||||| | ||| ||| Sbjct: 20864339 atatacgtctgcgtcgcggaggacgccaagacgttcgtggagtgccccagcccgaggaag 20864280 Query: 726 --gttcacgtgctccgacgagatcctcttccaccccttcaagaagtggatgct 776 || ||| ||| |||||| |||||||||||||| ||||||||||||||||| Sbjct: 20864279 ccgtacacctgcggcgacgacatcctcttccaccctttcaagaagtggatgct 20864227 Score = 58.0 bits (29), Expect = 7e-05 Identities = 71/85 (83%) Strand = Plus / Minus Query: 189 gtggccgggagcatactgtgtgcagaccaccggcggatgctgcatgcccaagagccccat 248 |||||||||||| ||||| | |||||| | | ||||||||||||||| |||| | | | Sbjct: 20865311 gtggccgggagcgtactgcgcgcagacgaaggccggatgctgcatgccgaagaccgacgt 20865252 Query: 249 cgtgccggcggccgacttctacgtc 273 || ||||||| |||||||||||||| Sbjct: 20865251 cgcgccggcgtccgacttctacgtc 20865227
>dbj|AP006174.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0229B10 Length = 114509 Score = 117 bits (59), Expect = 9e-23 Identities = 134/159 (84%) Strand = Plus / Minus Query: 375 gcagtactggagcaacatcaagtgccccagcaacaacggccagaagagctggaagagcgc 434 ||||||||||| |||||||| |||||||||||| | |||||||||| ||||||||| ||| Sbjct: 57008 gcagtactggaacaacatcaggtgccccagcaagagcggccagaagggctggaagaacgc 56949 Query: 435 ctggaagacgtccggcgtctgctccggccttgacgacaaggcttacttccaagccgccat 494 ||| ||||||||||||||||||||| ||| ||| | || ||||| | ||||| | Sbjct: 56948 gtgggagacgtccggcgtctgctccgacctcaccgagagcgcctactttgacaccgccct 56889 Query: 495 cgccctccgtagcaagatcaaccccctctctcgcctcgt 533 ||||||||| ||||||||||||||| ||||||||||| Sbjct: 56888 cgccctccgcgacaagatcaaccccctttctcgcctcgt 56850 Score = 109 bits (55), Expect = 2e-20 Identities = 189/233 (81%), Gaps = 3/233 (1%) Strand = Plus / Minus Query: 547 aagcccgactttggcctgtacagcttggagaagatcaagaaggccatccaggcgggcacc 606 ||||| |||||||| ||||||||| || ||||||||||| ||| ||| ||| ||| | | Sbjct: 56685 aagccggactttgggctgtacagcgtgaagaagatcaaggaggtgatcgaggaggggatc 56626 Query: 607 ggtgtggcgccgctgatccagtgtagcaaagggccgttcgataagttccagctgtaccag 666 || | | || ||||||||||||| ||||| || |||||| | ||||||||||| |||||| Sbjct: 56625 ggcgcgccggcgctgatccagtgcagcaagggcccgttcaacaagttccagctataccag 56566 Query: 667 atcttcatctgcgtggccgaggacgccaaaacgctcatcgagtgcccgaaaccgcagaa- 725 || | | ||||||| || ||||||||||| ||| || | |||||||| | ||| ||| Sbjct: 56565 atatacgtctgcgtcgcggaggacgccaagacgttcgtggagtgccccagcccgaggaag 56506 Query: 726 --gttcacgtgctccgacgagatcctcttccaccccttcaagaagtggatgct 776 || ||| ||| |||||| |||||||||||||| ||||||||||||||||| Sbjct: 56505 ccgtacacctgcggcgacgacatcctcttccaccctttcaagaagtggatgct 56453 Score = 58.0 bits (29), Expect = 7e-05 Identities = 71/85 (83%) Strand = Plus / Minus Query: 189 gtggccgggagcatactgtgtgcagaccaccggcggatgctgcatgcccaagagccccat 248 |||||||||||| ||||| | |||||| | | ||||||||||||||| |||| | | | Sbjct: 57537 gtggccgggagcgtactgcgcgcagacgaaggccggatgctgcatgccgaagaccgacgt 57478 Query: 249 cgtgccggcggccgacttctacgtc 273 || ||||||| |||||||||||||| Sbjct: 57477 cgcgccggcgtccgacttctacgtc 57453
>dbj|AP006067.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0569E11 Length = 157319 Score = 117 bits (59), Expect = 9e-23 Identities = 134/159 (84%) Strand = Plus / Minus Query: 375 gcagtactggagcaacatcaagtgccccagcaacaacggccagaagagctggaagagcgc 434 ||||||||||| |||||||| |||||||||||| | |||||||||| ||||||||| ||| Sbjct: 139811 gcagtactggaacaacatcaggtgccccagcaagagcggccagaagggctggaagaacgc 139752 Query: 435 ctggaagacgtccggcgtctgctccggccttgacgacaaggcttacttccaagccgccat 494 ||| ||||||||||||||||||||| ||| ||| | || ||||| | ||||| | Sbjct: 139751 gtgggagacgtccggcgtctgctccgacctcaccgagagcgcctactttgacaccgccct 139692 Query: 495 cgccctccgtagcaagatcaaccccctctctcgcctcgt 533 ||||||||| ||||||||||||||| ||||||||||| Sbjct: 139691 cgccctccgcgacaagatcaaccccctttctcgcctcgt 139653 Score = 109 bits (55), Expect = 2e-20 Identities = 189/233 (81%), Gaps = 3/233 (1%) Strand = Plus / Minus Query: 547 aagcccgactttggcctgtacagcttggagaagatcaagaaggccatccaggcgggcacc 606 ||||| |||||||| ||||||||| || ||||||||||| ||| ||| ||| ||| | | Sbjct: 139488 aagccggactttgggctgtacagcgtgaagaagatcaaggaggtgatcgaggaggggatc 139429 Query: 607 ggtgtggcgccgctgatccagtgtagcaaagggccgttcgataagttccagctgtaccag 666 || | | || ||||||||||||| ||||| || |||||| | ||||||||||| |||||| Sbjct: 139428 ggcgcgccggcgctgatccagtgcagcaagggcccgttcaacaagttccagctataccag 139369 Query: 667 atcttcatctgcgtggccgaggacgccaaaacgctcatcgagtgcccgaaaccgcagaa- 725 || | | ||||||| || ||||||||||| ||| || | |||||||| | ||| ||| Sbjct: 139368 atatacgtctgcgtcgcggaggacgccaagacgttcgtggagtgccccagcccgaggaag 139309 Query: 726 --gttcacgtgctccgacgagatcctcttccaccccttcaagaagtggatgct 776 || ||| ||| |||||| |||||||||||||| ||||||||||||||||| Sbjct: 139308 ccgtacacctgcggcgacgacatcctcttccaccctttcaagaagtggatgct 139256 Score = 58.0 bits (29), Expect = 7e-05 Identities = 71/85 (83%) Strand = Plus / Minus Query: 189 gtggccgggagcatactgtgtgcagaccaccggcggatgctgcatgcccaagagccccat 248 |||||||||||| ||||| | |||||| | | ||||||||||||||| |||| | | | Sbjct: 140340 gtggccgggagcgtactgcgcgcagacgaaggccggatgctgcatgccgaagaccgacgt 140281 Query: 249 cgtgccggcggccgacttctacgtc 273 || ||||||| |||||||||||||| Sbjct: 140280 cgcgccggcgtccgacttctacgtc 140256
>gb|U66241.1|ZMU66241 Zea mays S-like RNase (kin1) mRNA, complete cds Length = 988 Score = 113 bits (57), Expect = 1e-21 Identities = 81/89 (91%) Strand = Plus / Plus Query: 376 cagtactggagcaacatcaagtgccccagcaacaacggccagaagagctggaagagcgcc 435 ||||||||||||||||||| |||||||||||||||||| |||| |||||||||| |||| Sbjct: 313 cagtactggagcaacatcaggtgccccagcaacaacgggcagagcagctggaagaacgcc 372 Query: 436 tggaagacgtccggcgtctgctccggcct 464 ||||||| | |||||| |||||||||||| Sbjct: 373 tggaagaaggccggcgcctgctccggcct 401 Score = 83.8 bits (42), Expect = 1e-12 Identities = 60/66 (90%) Strand = Plus / Plus Query: 718 ccgcagaagttcacgtgctccgacgagatcctcttccaccccttcaagaagtggatgcta 777 |||||| ||| ||| |||||| | ||||||||||||||||||||||||||||||||||| Sbjct: 652 ccgcagcagtacacctgctccaaggagatcctcttccaccccttcaagaagtggatgctc 711 Query: 778 aagcag 783 |||||| Sbjct: 712 aagcag 717 Score = 46.1 bits (23), Expect = 0.26 Identities = 47/55 (85%) Strand = Plus / Plus Query: 163 ggtatctactaccagattggtttgatgtggccgggagcatactgtgtgcagacca 217 ||||||||||||||| | | | | |||||||| ||||||||||| | |||||||| Sbjct: 97 ggtatctactaccagctggctcttatgtggccaggagcatactgcgagcagacca 151
>gb|AY104404.1| Zea mays PCO098786 mRNA sequence Length = 1018 Score = 99.6 bits (50), Expect = 2e-17 Identities = 81/90 (90%), Gaps = 1/90 (1%) Strand = Plus / Plus Query: 376 cagtactggagcaacatcaagtgccccagcaacaac-ggccagaagagctggaagagcgc 434 ||||||||||||||||||| |||||||||||||||| || |||| |||||||||| ||| Sbjct: 324 cagtactggagcaacatcaggtgccccagcaacaacggggcagagcagctggaagaacgc 383 Query: 435 ctggaagacgtccggcgtctgctccggcct 464 |||||||| | |||||| |||||||||||| Sbjct: 384 ctggaagaaggccggcgcctgctccggcct 413 Score = 83.8 bits (42), Expect = 1e-12 Identities = 60/66 (90%) Strand = Plus / Plus Query: 718 ccgcagaagttcacgtgctccgacgagatcctcttccaccccttcaagaagtggatgcta 777 |||||| ||| ||| |||||| | ||||||||||||||||||||||||||||||||||| Sbjct: 664 ccgcagcagtacacctgctccaaggagatcctcttccaccccttcaagaagtggatgctc 723 Query: 778 aagcag 783 |||||| Sbjct: 724 aagcag 729 Score = 46.1 bits (23), Expect = 0.26 Identities = 47/55 (85%) Strand = Plus / Plus Query: 163 ggtatctactaccagattggtttgatgtggccgggagcatactgtgtgcagacca 217 ||||||||||||||| | | | | |||||||| ||||||||||| | |||||||| Sbjct: 108 ggtatctactaccagctggctcttatgtggccaggagcatactgcgagcagacca 162
>ref|XM_678705.1| PREDICTED: Danio rerio similar to EMO2 (LOC556015), mRNA Length = 4495 Score = 46.1 bits (23), Expect = 0.26 Identities = 23/23 (100%) Strand = Plus / Plus Query: 983 atgatgataataataatgtaacc 1005 ||||||||||||||||||||||| Sbjct: 4142 atgatgataataataatgtaacc 4164
>emb|BX571714.7| Zebrafish DNA sequence from clone DKEY-16L2 in linkage group 3, complete sequence Length = 240105 Score = 46.1 bits (23), Expect = 0.26 Identities = 23/23 (100%) Strand = Plus / Minus Query: 983 atgatgataataataatgtaacc 1005 ||||||||||||||||||||||| Sbjct: 20924 atgatgataataataatgtaacc 20902
>gb|BC090263.1| Danio rerio cDNA clone IMAGE:6896133 Length = 1265 Score = 46.1 bits (23), Expect = 0.26 Identities = 23/23 (100%) Strand = Plus / Minus Query: 983 atgatgataataataatgtaacc 1005 ||||||||||||||||||||||| Sbjct: 1145 atgatgataataataatgtaacc 1123
>emb|BX005142.4| Zebrafish DNA sequence from clone CH211-129K16 in linkage group 3, complete sequence Length = 170200 Score = 46.1 bits (23), Expect = 0.26 Identities = 23/23 (100%) Strand = Plus / Minus Query: 983 atgatgataataataatgtaacc 1005 ||||||||||||||||||||||| Sbjct: 105655 atgatgataataataatgtaacc 105633
>emb|AL772396.7| Zebrafish DNA sequence from clone CH211-253F14, complete sequence Length = 148465 Score = 46.1 bits (23), Expect = 0.26 Identities = 23/23 (100%) Strand = Plus / Minus Query: 979 ttatatgatgataataataatgt 1001 ||||||||||||||||||||||| Sbjct: 102757 ttatatgatgataataataatgt 102735 Score = 46.1 bits (23), Expect = 0.26 Identities = 23/23 (100%) Strand = Plus / Minus Query: 979 ttatatgatgataataataatgt 1001 ||||||||||||||||||||||| Sbjct: 103214 ttatatgatgataataataatgt 103192
>gb|CP000473.1| Solibacter usitatus Ellin6076, complete genome Length = 9965640 Score = 44.1 bits (22), Expect = 1.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 577 aagatcaagaaggccatccagg 598 |||||||||||||||||||||| Sbjct: 6792837 aagatcaagaaggccatccagg 6792816
>emb|BX005213.15| Mouse DNA sequence from clone RP23-412I2 on chromosome X, complete sequence Length = 96535 Score = 44.1 bits (22), Expect = 1.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 409 aacggccagaagagctggaaga 430 |||||||||||||||||||||| Sbjct: 54927 aacggccagaagagctggaaga 54948
>gb|AE014296.4| Drosophila melanogaster chromosome 3L, complete sequence Length = 24543557 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 983 atgatgataataataatgtaa 1003 ||||||||||||||||||||| Sbjct: 17423541 atgatgataataataatgtaa 17423521
>gb|AC005018.2| Homo sapiens BAC clone GS1-223D4 from 7, complete sequence Length = 107527 Score = 42.1 bits (21), Expect = 4.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 382 tggagcaacatcaagtgccccagca 406 |||||||| |||||||||||||||| Sbjct: 64507 tggagcaagatcaagtgccccagca 64531
>gb|AC025728.4| Homo sapiens PAC clone RP5-884M6 from 7, complete sequence Length = 36215 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 578 agatcaagaaggccatccagg 598 ||||||||||||||||||||| Sbjct: 30320 agatcaagaaggccatccagg 30340
>gb|AC090525.8| Homo sapiens 12 BAC RP11-73B8 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 174576 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 979 ttatatgatgataataataat 999 ||||||||||||||||||||| Sbjct: 4394 ttatatgatgataataataat 4414
>gb|AY129459.1| Drosophila melanogaster RH08077 full insert cDNA Length = 5460 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 983 atgatgataataataatgtaa 1003 ||||||||||||||||||||| Sbjct: 2743 atgatgataataataatgtaa 2763
>gb|AC009373.7| Drosophila melanogaster 3L BAC RP98-22B18 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 167630 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 983 atgatgataataataatgtaa 1003 ||||||||||||||||||||| Sbjct: 111817 atgatgataataataatgtaa 111797
>gb|AE012119.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 27 of 460 of the complete genome Length = 10950 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 572 tggagaagatcaagaaggcca 592 ||||||||||||||||||||| Sbjct: 1818 tggagaagatcaagaaggcca 1838
>gb|AC009811.14| Homo sapiens chromosome 3, clone RP11-491K7, complete sequence Length = 171083 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 979 ttatatgatgataataataat 999 ||||||||||||||||||||| Sbjct: 38851 ttatatgatgataataataat 38831
>emb|BX908755.10| Zebrafish DNA sequence from clone DKEY-67F11 in linkage group 3, complete sequence Length = 160005 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 979 ttatatgatgataataataat 999 ||||||||||||||||||||| Sbjct: 74528 ttatatgatgataataataat 74508
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 572 tggagaagatcaagaaggcca 592 ||||||||||||||||||||| Sbjct: 289630 tggagaagatcaagaaggcca 289650
>emb|AL672065.7| Zebrafish DNA sequence from clone BUSM1-63M2 in linkage group 1 Contains the 3' end of a novel gene similar to RSU1 (Ras suppressor protein 1), the 5' end of a novel gene for a protein similar to gliacolin and a CpG island, complete sequence Length = 82767 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 979 ttatatgatgataataataat 999 ||||||||||||||||||||| Sbjct: 14450 ttatatgatgataataataat 14430
>emb|AL031745.8|PFMAL1P2 Plasmodium falciparum DNA from MAL1P2 Length = 384550 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 983 atgatgataataataatgtaa 1003 ||||||||||||||||||||| Sbjct: 323334 atgatgataataataatgtaa 323354
>emb|AL929280.6| Mouse DNA sequence from clone RP23-67M20 on chromosome 11 Contains a novel gene (2810471M01Rik), the 5' end of the gene for a novel protein (E030025D05Rik) and a CpG island, complete sequence Length = 216627 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 983 atgatgataataataatgtaa 1003 ||||||||||||||||||||| Sbjct: 92812 atgatgataataataatgtaa 92792
>emb|BX510905.7| Zebrafish DNA sequence from clone DKEY-37J22 in linkage group 20, complete sequence Length = 14450 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 979 ttatatgatgataataataat 999 ||||||||||||||||||||| Sbjct: 535 ttatatgatgataataataat 515
>emb|BX248246.11| Zebrafish DNA sequence from clone CH211-122H15 in linkage group 20, complete sequence Length = 176239 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 979 ttatatgatgataataataat 999 ||||||||||||||||||||| Sbjct: 174774 ttatatgatgataataataat 174754
>gb|AC017104.8| Homo sapiens BAC clone RP11-562I5 from 2, complete sequence Length = 168880 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 418 aagagctggaagagcgcctgg 438 ||||||||||||||||||||| Sbjct: 74737 aagagctggaagagcgcctgg 74717
>emb|BX005151.5| Zebrafish DNA sequence from clone CH211-11M20, complete sequence Length = 142257 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 983 atgatgataataataatgtaa 1003 ||||||||||||||||||||| Sbjct: 134138 atgatgataataataatgtaa 134158
>emb|BX000366.6| Zebrafish DNA sequence from clone CH211-204I4, complete sequence Length = 169542 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 979 ttatatgatgataataataat 999 ||||||||||||||||||||| Sbjct: 13396 ttatatgatgataataataat 13416 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 168,496,700 Number of extensions: 10285945 Number of successful extensions: 218832 Number of sequences better than 10.0: 44 Number of HSP's gapped: 218815 Number of HSP's successfully gapped: 104 Length of query: 1087 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1064 Effective length of database: 18,503,978,556 Effective search space: 19688233183584 Effective search space used: 19688233183584 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
