ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf89o15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q89BP0:FMT_BRAJA Methionyl-tRNA formyltransferase - Bradyrhizobi... 37 0.29
2P30606:ITR2_YEAST Myo-inositol transporter 2 - Saccharomyces cer... 33 7.2
3Q940S5:COPZ1_ARATH Coatomer subunit zeta-1 - Arabidopsis thalian... 33 7.2

>Q89BP0:FMT_BRAJA Methionyl-tRNA formyltransferase - Bradyrhizobium japonicum|
          Length = 311
 Score = 37.4 bits (85), Expect = 0.29
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
 Frame = +3

Query: 567 IADVVTSSNLFDVLSSTSGGRLPFPVYDKYLAGLDRAFKKMKTQSESSLLSGFRSQRGER 746
           I D +T+++L D LS     RL   +  + +A LDR   ++K QSE  +    +  + E 
Sbjct: 158 ITDTMTAADLHDRLS-----RLGADLMVRAMAALDRGGLQLKKQSEDGVTYAAKIDKAE- 211

Query: 747 VLEVDGTLTTQPVLEHV-GISTWPG 818
              +D T   + VL H+ G+S +PG
Sbjct: 212 -ARIDWTKPARAVLRHIHGLSPFPG 235



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>P30606:ITR2_YEAST Myo-inositol transporter 2 - Saccharomyces cerevisiae (Baker's yeast)|
          Length = 609

 Score = 32.7 bits (73), Expect = 7.2
 Identities = 30/118 (25%), Positives = 54/118 (45%)
 Frame = +3

Query: 1569 LSPVSELWRLLVSLALWDEPLKSFVFCLVSSSIIIRGWVVYFLVMVILLSAMVMLLTRLT 1748
            L+ V   WR+LV L+L    L+   FC +  +        Y+++   L  A ++L     
Sbjct: 261  LNHVKNGWRILVGLSLIPTVLQFSFFCFLPDT------PRYYVMKGDLKRAKMVLKRSYV 314

Query: 1749 SQGKPMTEVKVTSPPSMNTMEQLLAVQNAISKVEELVQDANIVLLKIRALLLAFPSQA 1922
            +    + + KV    S+N   Q +  +N I+K   +V++ + V    RAL++    QA
Sbjct: 315  NTEDEIIDQKVEELSSLN---QSIPGKNPITKFWNMVKELHTVPSNFRALIIGCGLQA 369



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>Q940S5:COPZ1_ARATH Coatomer subunit zeta-1 - Arabidopsis thaliana (Mouse-ear cress)|
          Length = 177

 Score = 32.7 bits (73), Expect = 7.2
 Identities = 24/112 (21%), Positives = 58/112 (51%), Gaps = 6/112 (5%)
 Frame = +3

Query: 1035 HSRRDYWLAIISEVLYVHRFVRK--FDISGVDKEEIILKASLGILRLQAIEELAFPASNR 1208
            ++R +  +  +   + V++FV+   F ++G ++E  ++ AS+      A+  L     ++
Sbjct: 50   NARTEVEVTALENNIVVYKFVQDLHFFVTGGEEENELILASVLEGLFDAVTLLLRSNVDK 109

Query: 1209 YESL----LLFNLCDKLPGGDVILETLASTISSRSSAQANQPGTSIGMRSMS 1352
             E+L    L+F   D++  G ++LET A+ I+ ++   +  P   +  +++S
Sbjct: 110  REALDNLDLIFLSFDEIIDGGIVLETDANVIAGKAGINSTDPNAPLSEQTIS 161


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 404,796,208
Number of extensions: 8595638
Number of successful extensions: 23870
Number of sequences better than 10.0: 3
Number of HSP's gapped: 23858
Number of HSP's successfully gapped: 3
Length of query: 804
Length of database: 100,686,439
Length adjustment: 121
Effective length of query: 683
Effective length of database: 67,496,744
Effective search space: 46100276152
Effective search space used: 46100276152
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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