>O61577:KTNA1_STRPU Katanin p60 ATPase-containing subunit - Strongylocentrotus|
           purpuratus (Purple sea urchin)
          Length = 516
 Score = 33.9 bits (76), Expect = 1.7
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = -3

Query: 187 RLTAPRSPQHSQPGTTRNGR--TEKRWRASAGGAAPVEAGSSGGSCGADRGRQRG 29
           R + P  P +  PG  R GR  +++R  A +GG      G  GG+ G+D+ + RG
Sbjct: 139 RRSEPSKPANRAPGNDRGGRGPSDRRGDARSGG------GGRGGARGSDKDKNRG 187

>Q80910:VE2_HPV38 Regulatory protein E2 - Human papillomavirus type 38|
          Length = 441

 Score = 33.1 bits (74), Expect = 2.9
 Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 10/87 (11%)
 Frame = -3

Query: 244 PQTSVS--KPVSILIQPKIARRLTAP-------RSPQHSQPGTTRNGRTEKRWRAS-AGG 95
           P TSVS  +P S   + +  R+ ++P       R  Q    GT R  ++  R R++  GG
Sbjct: 220 PSTSVSPERPPSQTAR-RYGRKASSPSTTSRRQRKGQRETTGTQRRRKSRSRSRSTNRGG 278

Query: 94  AAPVEAGSSGGSCGADRGRQRGDGEEQ 14
                + S G S    RGR+RG G+ +
Sbjct: 279 RDTRRSSSRGSSVSPTRGRRRGGGDSR 305

>O54834:RHG06_MOUSE Rho GTPase-activating protein 6 - Mus musculus (Mouse)|
          Length = 987

 Score = 32.7 bits (73), Expect = 3.8
 Identities = 20/69 (28%), Positives = 34/69 (49%)
 Frame = +2

Query: 392 STVVEVLEKSASEEVHLQFPFGNKEDVESLGTVCDLENNESNAAEAITLNVVALEMSISC 571
           S+  E   +S S       P   +    S+ ++ DL++N+S   EA+ L++ A   S   
Sbjct: 337 SSTSETPNESTSPNTPEPAPRARRRGAMSVDSITDLDDNQSRLLEALQLSLPAEAQSKKE 396

Query: 572 KAPDENISL 598
           KA D+ +SL
Sbjct: 397 KARDKKLSL 405

>O43182:RHG06_HUMAN Rho GTPase-activating protein 6 - Homo sapiens (Human)|
          Length = 974

 Score = 32.7 bits (73), Expect = 3.8
 Identities = 20/69 (28%), Positives = 34/69 (49%)
 Frame = +2

Query: 392 STVVEVLEKSASEEVHLQFPFGNKEDVESLGTVCDLENNESNAAEAITLNVVALEMSISC 571
           S+  E   +S S       P   +    S+ ++ DL++N+S   EA+ L++ A   S   
Sbjct: 335 SSTSETPNESTSPNTPEPAPRARRRGAMSVDSITDLDDNQSRLLEALQLSLPAEAQSKKE 394

Query: 572 KAPDENISL 598
           KA D+ +SL
Sbjct: 395 KARDKKLSL 403

>O95714:HERC2_HUMAN Probable E3 ubiquitin-protein ligase HERC2 - Homo sapiens (Human)|
          Length = 4834

 Score = 32.7 bits (73), Expect = 3.8
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
 Frame = +2

Query: 269  NIYFRNKSLFHMVGAESTLPAVDHAA---LDNSDTEVSEVVECDSTVVEVLEKSASEEV 436
            NI F  KSL    G  S+LP V+      LD+SD +V+E+ + D+   E  ++   E+V
Sbjct: 2474 NIEFALKSLTGASGNASSLPGVEALVGWLLDHSDIQVTELSDADTVSDEYSDEEVVEDV 2532

>Q8P8M6:RLUB_XANCP Ribosomal large subunit pseudouridine synthase B - Xanthomonas|
           campestris pv. campestris
          Length = 492

 Score = 32.0 bits (71), Expect = 6.5
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = -3

Query: 181 TAPRSPQHSQPGTTRNGRTEKRWRASAGGAAPVEAGSSGGSCGADRGRQRGDGEEQWGH 5
           T P   +++ PG    G+     +   GGA P   G   G+ G  +G+ +G G+ Q  H
Sbjct: 395 TGPSGHRNAGPGGAGTGQPRPYAKKGPGGARPGAGGQGRGAAGG-QGQSQGQGQGQRKH 452

>Q9UBB5:MBD2_HUMAN Methyl-CpG-binding domain protein 2 - Homo sapiens (Human)|
          Length = 411

 Score = 32.0 bits (71), Expect = 6.5
 Identities = 17/42 (40%), Positives = 19/42 (45%)
 Frame = -3

Query: 148 GTTRNGRTEKRWRASAGGAAPVEAGSSGGSCGADRGRQRGDG 23
           G    GR   RW+         +AG  GG CG  RGR RG G
Sbjct: 53  GARGGGRGRGRWK---------QAGRGGGVCGRGRGRGRGRG 85

>Q9D883:U2AF1_MOUSE Splicing factor U2AF 35 kDa subunit - Mus musculus (Mouse)|
          Length = 239

 Score = 31.6 bits (70), Expect = 8.5
 Identities = 20/67 (29%), Positives = 28/67 (41%)
 Frame = -3

Query: 208 IQPKIARRLTAPRSPQHSQPGTTRNGRTEKRWRASAGGAAPVEAGSSGGSCGADRGRQRG 29
           I  ++ R L   R  +H     +R  R+  R R   GG      G  GG  G +R R+R 
Sbjct: 177 ISRELRRELYGRRRKKHRSRSRSRERRSRSRDRGRGGG------GGGGGGGGRERDRRRS 230

Query: 28  DGEEQWG 8
              E+ G
Sbjct: 231 RDRERSG 237

>P50498:MSA2_PLAF7 Merozoite surface antigen 2 precursor - Plasmodium falciparum|
           (isolate 3D7)
          Length = 272

 Score = 31.6 bits (70), Expect = 8.5
 Identities = 22/62 (35%), Positives = 29/62 (46%)
 Frame = -3

Query: 193 ARRLTAPRSPQHSQPGTTRNGRTEKRWRASAGGAAPVEAGSSGGSCGADRGRQRGDGEEQ 14
           A  ++  RS   S+P T   G        SAGG+A    GS+GGS G   G   G+G + 
Sbjct: 34  AYNMSIRRSMAESKPSTGAGGSAG----GSAGGSA---GGSAGGSAGGSAGSGDGNGADA 86

Query: 13  WG 8
            G
Sbjct: 87  EG 88


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 243,584,748
Number of extensions: 5435393
Number of successful extensions: 16214
Number of sequences better than 10.0: 9
Number of HSP's gapped: 16143
Number of HSP's successfully gapped: 9
Length of query: 474
Length of database: 100,686,439
Length adjustment: 117
Effective length of query: 357
Effective length of database: 68,593,924
Effective search space: 24488030868
Effective search space used: 24488030868
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)