Clone Name | FLbaf89o03 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_001073756.1| Oryza sativa (japonica cultivar-group) Os12g0605400 (Os12g0605400) mRNA, complete cds Length = 923 Score = 462 bits (233), Expect = e-126 Identities = 359/401 (89%) Strand = Plus / Plus Query: 199 gtcgtgccaaggaactttagactgctggaagagcttgagagaggagagaagggcattggg 258 |||||||| |||||||| |||||||| ||||||||||||||||| ||||||||||| || Sbjct: 231 gtcgtgcctaggaacttcagactgctagaagagcttgagagaggggagaagggcatcggt 290 Query: 259 gatggaacagttagctatggaatggatgacgcagatgatatctacatgcgctcctggaca 318 |||||| |||| ||||||||||||||||| ||||| ||||||||||||||||| |||||| Sbjct: 291 gatggatcagtaagctatggaatggatgatgcagacgatatctacatgcgctcttggaca 350 Query: 319 ggaacaataattggtccccacaacactgtccacgagggccggatttatcagttgaagctt 378 || ||||| ||||||||||| ||||||||||| ||||||||||| || || |||||||| Sbjct: 351 ggcacaattattggtccccataacactgtccatgagggccggatataccaactgaagctt 410 Query: 379 ttctgtgacaaggactatccagacaggccaccgactgttaggtttcactcaagaatcaac 438 ||||| ||||||||||| |||||||||||||| ||||| | |||||||||||||||||| Sbjct: 411 ttctgcgacaaggactacccagacaggccaccaactgtaaaatttcactcaagaatcaac 470 Query: 439 atgacctgtgtaaatgccgagactggattggtggaccaaaggaagttcagcctgttgtcc 498 |||||||||||||| | |||| ||||||||| |||||||||||||||||||||||||| Sbjct: 471 atgacctgtgtaaacccagagaatggattggttgaccaaaggaagttcagcctgttgtca 530 Query: 499 aactggcgccgtgagtacacaatggagaacatcttgatacagcttaagaaagagatggcg 558 || |||||||| ||||||||||||||| ||||||| || ||||||||||||||||| Sbjct: 531 aattggcgccgcgagtacacaatggaggctatcttgacccaacttaagaaagagatggca 590 Query: 559 acatcacacaaccggaaactagtgcagcctccggaggggac 599 ||||||||||||||||||||||||||||||| |||||||| Sbjct: 591 gcatcacacaaccggaaactagtgcagcctccagaggggac 631
>dbj|AK068060.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013130B07, full insert sequence Length = 924 Score = 462 bits (233), Expect = e-126 Identities = 359/401 (89%) Strand = Plus / Plus Query: 199 gtcgtgccaaggaactttagactgctggaagagcttgagagaggagagaagggcattggg 258 |||||||| |||||||| |||||||| ||||||||||||||||| ||||||||||| || Sbjct: 232 gtcgtgcctaggaacttcagactgctagaagagcttgagagaggggagaagggcatcggt 291 Query: 259 gatggaacagttagctatggaatggatgacgcagatgatatctacatgcgctcctggaca 318 |||||| |||| ||||||||||||||||| ||||| ||||||||||||||||| |||||| Sbjct: 292 gatggatcagtaagctatggaatggatgatgcagacgatatctacatgcgctcttggaca 351 Query: 319 ggaacaataattggtccccacaacactgtccacgagggccggatttatcagttgaagctt 378 || ||||| ||||||||||| ||||||||||| ||||||||||| || || |||||||| Sbjct: 352 ggcacaattattggtccccataacactgtccatgagggccggatataccaactgaagctt 411 Query: 379 ttctgtgacaaggactatccagacaggccaccgactgttaggtttcactcaagaatcaac 438 ||||| ||||||||||| |||||||||||||| ||||| | |||||||||||||||||| Sbjct: 412 ttctgcgacaaggactacccagacaggccaccaactgtaaaatttcactcaagaatcaac 471 Query: 439 atgacctgtgtaaatgccgagactggattggtggaccaaaggaagttcagcctgttgtcc 498 |||||||||||||| | |||| ||||||||| |||||||||||||||||||||||||| Sbjct: 472 atgacctgtgtaaacccagagaatggattggttgaccaaaggaagttcagcctgttgtca 531 Query: 499 aactggcgccgtgagtacacaatggagaacatcttgatacagcttaagaaagagatggcg 558 || |||||||| ||||||||||||||| ||||||| || ||||||||||||||||| Sbjct: 532 aattggcgccgcgagtacacaatggaggctatcttgacccaacttaagaaagagatggca 591 Query: 559 acatcacacaaccggaaactagtgcagcctccggaggggac 599 ||||||||||||||||||||||||||||||| |||||||| Sbjct: 592 gcatcacacaaccggaaactagtgcagcctccagaggggac 632
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12 Length = 27566993 Score = 168 bits (85), Expect = 2e-38 Identities = 124/137 (90%) Strand = Plus / Minus Query: 202 gtgccaaggaactttagactgctggaagagcttgagagaggagagaagggcattggggat 261 ||||| |||||||| |||||||| ||||||||||||||||| ||||||||||| || ||| Sbjct: 25593373 gtgcctaggaacttcagactgctagaagagcttgagagaggggagaagggcatcggtgat 25593314 Query: 262 ggaacagttagctatggaatggatgacgcagatgatatctacatgcgctcctggacagga 321 ||| |||| ||||||||||||||||| ||||| ||||||||||||||||| |||||||| Sbjct: 25593313 ggatcagtaagctatggaatggatgatgcagacgatatctacatgcgctcttggacaggc 25593254 Query: 322 acaataattggtcccca 338 ||||| ||||||||||| Sbjct: 25593253 acaattattggtcccca 25593237 Score = 159 bits (80), Expect = 2e-35 Identities = 116/128 (90%) Strand = Plus / Minus Query: 472 gaccaaaggaagttcagcctgttgtccaactggcgccgtgagtacacaatggagaacatc 531 |||||||||||||||||||||||||| || |||||||| ||||||||||||||| ||| Sbjct: 25592889 gaccaaaggaagttcagcctgttgtcaaattggcgccgcgagtacacaatggaggctatc 25592830 Query: 532 ttgatacagcttaagaaagagatggcgacatcacacaaccggaaactagtgcagcctccg 591 |||| || ||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 25592829 ttgacccaacttaagaaagagatggcagcatcacacaaccggaaactagtgcagcctcca 25592770 Query: 592 gaggggac 599 |||||||| Sbjct: 25592769 gaggggac 25592762 Score = 135 bits (68), Expect = 3e-28 Identities = 113/128 (88%) Strand = Plus / Minus Query: 343 actgtccacgagggccggatttatcagttgaagcttttctgtgacaaggactatccagac 402 |||||||| ||||||||||| || || ||||||||||||| ||||||||||| |||||| Sbjct: 25593109 actgtccatgagggccggatataccaactgaagcttttctgcgacaaggactacccagac 25593050 Query: 403 aggccaccgactgttaggtttcactcaagaatcaacatgacctgtgtaaatgccgagact 462 |||||||| ||||| | |||||||||||||||||||||||||||||||| | |||| | Sbjct: 25593049 aggccaccaactgtaaaatttcactcaagaatcaacatgacctgtgtaaacccagagaat 25592990 Query: 463 ggattggt 470 |||||||| Sbjct: 25592989 ggattggt 25592982
>emb|AL732537.4|CNS08C9C Oryza sativa chromosome 12, . BAC OSJNBa0036L12 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 127003 Score = 168 bits (85), Expect = 2e-38 Identities = 124/137 (90%) Strand = Plus / Plus Query: 202 gtgccaaggaactttagactgctggaagagcttgagagaggagagaagggcattggggat 261 ||||| |||||||| |||||||| ||||||||||||||||| ||||||||||| || ||| Sbjct: 80345 gtgcctaggaacttcagactgctagaagagcttgagagaggggagaagggcatcggtgat 80404 Query: 262 ggaacagttagctatggaatggatgacgcagatgatatctacatgcgctcctggacagga 321 ||| |||| ||||||||||||||||| ||||| ||||||||||||||||| |||||||| Sbjct: 80405 ggatcagtaagctatggaatggatgatgcagacgatatctacatgcgctcttggacaggc 80464 Query: 322 acaataattggtcccca 338 ||||| ||||||||||| Sbjct: 80465 acaattattggtcccca 80481 Score = 159 bits (80), Expect = 2e-35 Identities = 116/128 (90%) Strand = Plus / Plus Query: 472 gaccaaaggaagttcagcctgttgtccaactggcgccgtgagtacacaatggagaacatc 531 |||||||||||||||||||||||||| || |||||||| ||||||||||||||| ||| Sbjct: 80829 gaccaaaggaagttcagcctgttgtcaaattggcgccgcgagtacacaatggaggctatc 80888 Query: 532 ttgatacagcttaagaaagagatggcgacatcacacaaccggaaactagtgcagcctccg 591 |||| || ||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 80889 ttgacccaacttaagaaagagatggcagcatcacacaaccggaaactagtgcagcctcca 80948 Query: 592 gaggggac 599 |||||||| Sbjct: 80949 gaggggac 80956 Score = 135 bits (68), Expect = 3e-28 Identities = 113/128 (88%) Strand = Plus / Plus Query: 343 actgtccacgagggccggatttatcagttgaagcttttctgtgacaaggactatccagac 402 |||||||| ||||||||||| || || ||||||||||||| ||||||||||| |||||| Sbjct: 80609 actgtccatgagggccggatataccaactgaagcttttctgcgacaaggactacccagac 80668 Query: 403 aggccaccgactgttaggtttcactcaagaatcaacatgacctgtgtaaatgccgagact 462 |||||||| ||||| | |||||||||||||||||||||||||||||||| | |||| | Sbjct: 80669 aggccaccaactgtaaaatttcactcaagaatcaacatgacctgtgtaaacccagagaat 80728 Query: 463 ggattggt 470 |||||||| Sbjct: 80729 ggattggt 80736
>ref|NM_001057598.1| Oryza sativa (japonica cultivar-group) Os03g0712300 (Os03g0712300) mRNA, complete cds Length = 789 Score = 165 bits (83), Expect = 3e-37 Identities = 176/207 (85%) Strand = Plus / Plus Query: 211 aactttagactgctggaagagcttgagagaggagagaagggcattggggatggaacagtt 270 |||||||||||||| |||||||||||| |||| |||||||||||||| ||||| ||||| Sbjct: 135 aactttagactgcttgaagagcttgagcgaggtgagaagggcattggtgatgggacagtg 194 Query: 271 agctatggaatggatgacgcagatgatatctacatgcgctcctggacaggaacaataatt 330 ||||||||||||||||| || ||||| || || ||||| |||||||||||||| || ||| Sbjct: 195 agctatggaatggatgatgctgatgacatatatatgcgttcctggacaggaactatcatt 254 Query: 331 ggtccccacaacactgtccacgagggccggatttatcagttgaagcttttctgtgacaag 390 || || | || ||||| || ||||| || || |||||||||||| | |||||||| | Sbjct: 255 ggccctcctaatactgttcatgagggacgaatctatcagttgaagttgttctgtgataca 314 Query: 391 gactatccagacaggccaccgactgtt 417 |||||||||||||| ||||| |||||| Sbjct: 315 gactatccagacagaccacctactgtt 341
>dbj|AK120951.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023038L10, full insert sequence Length = 790 Score = 165 bits (83), Expect = 3e-37 Identities = 176/207 (85%) Strand = Plus / Plus Query: 211 aactttagactgctggaagagcttgagagaggagagaagggcattggggatggaacagtt 270 |||||||||||||| |||||||||||| |||| |||||||||||||| ||||| ||||| Sbjct: 136 aactttagactgcttgaagagcttgagcgaggtgagaagggcattggtgatgggacagtg 195 Query: 271 agctatggaatggatgacgcagatgatatctacatgcgctcctggacaggaacaataatt 330 ||||||||||||||||| || ||||| || || ||||| |||||||||||||| || ||| Sbjct: 196 agctatggaatggatgatgctgatgacatatatatgcgttcctggacaggaactatcatt 255 Query: 331 ggtccccacaacactgtccacgagggccggatttatcagttgaagcttttctgtgacaag 390 || || | || ||||| || ||||| || || |||||||||||| | |||||||| | Sbjct: 256 ggccctcctaatactgttcatgagggacgaatctatcagttgaagttgttctgtgataca 315 Query: 391 gactatccagacaggccaccgactgtt 417 |||||||||||||| ||||| |||||| Sbjct: 316 gactatccagacagaccacctactgtt 342
>gb|DQ244159.1| Zea mays clone 2642 mRNA sequence Length = 792 Score = 153 bits (77), Expect = 1e-33 Identities = 203/245 (82%) Strand = Plus / Plus Query: 241 ggagagaagggcattggggatggaacagttagctatggaatggatgacgcagatgatatc 300 ||||||||||||||||| ||||||||||| ||||||||||||||||| || ||||| ||| Sbjct: 163 ggagagaagggcattggtgatggaacagtgagctatggaatggatgatgccgatgacatc 222 Query: 301 tacatgcgctcctggacaggaacaataattggtccccacaacactgtccacgagggccgg 360 |||||||| || ||||| || || || ||||| || ||||| ||||| || ||||| || Sbjct: 223 tacatgcggtcatggactggtaccatcattggccctcacaatactgtacatgagggtcgc 282 Query: 361 atttatcagttgaagcttttctgtgacaaggactatccagacaggccaccgactgttagg 420 || || ||| ||||| | || ||||||||||||||||| || | |||||| |||| || Sbjct: 283 atctaccagctgaagttgttttgtgacaaggactatccggagaagccaccatctgtcaga 342 Query: 421 tttcactcaagaatcaacatgacctgtgtaaatgccgagactggattggtggaccaaagg 480 || |||||||||||||||||||| || || ||| |||||| ||| |||| || | |||| Sbjct: 343 ttccactcaagaatcaacatgacatgcgttaatcacgagacaggaatggttgatccaagg 402 Query: 481 aagtt 485 ||||| Sbjct: 403 aagtt 407
>gb|AY104181.1| Zea mays PCO060230 mRNA sequence Length = 1061 Score = 145 bits (73), Expect = 3e-31 Identities = 202/245 (82%) Strand = Plus / Plus Query: 241 ggagagaagggcattggggatggaacagttagctatggaatggatgacgcagatgatatc 300 ||||||||||||||||| ||||| ||||| ||||||||||||||||| || ||||| ||| Sbjct: 344 ggagagaagggcattggtgatgggacagtgagctatggaatggatgatgctgatgacatc 403 Query: 301 tacatgcgctcctggacaggaacaataattggtccccacaacactgtccacgagggccgg 360 |||||||| || ||||| || || || ||||| || ||||| ||||| || ||||| || Sbjct: 404 tacatgcggtcatggactggtaccatcattggccctcacaatactgtacatgagggtcgc 463 Query: 361 atttatcagttgaagcttttctgtgacaaggactatccagacaggccaccgactgttagg 420 || || ||| ||||| | || ||||||||||||||||| || | |||||| |||| || Sbjct: 464 atctaccagctgaagttgttttgtgacaaggactatccggagaagccaccatctgtcaga 523 Query: 421 tttcactcaagaatcaacatgacctgtgtaaatgccgagactggattggtggaccaaagg 480 || |||||||||||||||||||| || || ||| |||||| ||| |||| || | |||| Sbjct: 524 ttccactcaagaatcaacatgacatgcgttaatcacgagacaggaatggttgatccaagg 583 Query: 481 aagtt 485 ||||| Sbjct: 584 aagtt 588
>emb|CT833593.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN051B14, full insert sequence Length = 852 Score = 137 bits (69), Expect = 8e-29 Identities = 180/217 (82%) Strand = Plus / Plus Query: 221 tgctggaagagcttgagagaggagagaagggcattggggatggaacagttagctatggaa 280 |||| ||||||||||| | || || ||||||||||| |||||||| || |||||||||| Sbjct: 165 tgctagaagagcttgaacgtggtgaaaagggcattggagatggaaccgtgagctatggaa 224 Query: 281 tggatgacgcagatgatatctacatgcgctcctggacaggaacaataattggtccccaca 340 ||||||| |||||||| ||||||||||| || ||||| || || || |||||||| || | Sbjct: 225 tggatgatgcagatgacatctacatgcggtcttggactggcaccatcattggtccacata 284 Query: 341 acactgtccacgagggccggatttatcagttgaagcttttctgtgacaaggactatccag 400 | | |||||| || || || || || ||| ||||||| ||||||||||||||||| |||| Sbjct: 285 atagtgtccatgaaggtcgcatctaccagctgaagctgttctgtgacaaggactacccag 344 Query: 401 acaggccaccgactgttaggtttcactcaagaatcaa 437 | | |||||| |||| ||||||| ||||||||||| Sbjct: 345 agaagccaccatctgtccggtttcattcaagaatcaa 381
>ref|NM_001069339.1| Oryza sativa (japonica cultivar-group) Os09g0297100 (Os09g0297100) mRNA, complete cds Length = 831 Score = 137 bits (69), Expect = 8e-29 Identities = 180/217 (82%) Strand = Plus / Plus Query: 221 tgctggaagagcttgagagaggagagaagggcattggggatggaacagttagctatggaa 280 |||| ||||||||||| | || || ||||||||||| |||||||| || |||||||||| Sbjct: 115 tgctagaagagcttgaacgtggtgaaaagggcattggagatggaaccgtgagctatggaa 174 Query: 281 tggatgacgcagatgatatctacatgcgctcctggacaggaacaataattggtccccaca 340 ||||||| |||||||| ||||||||||| || ||||| || || || |||||||| || | Sbjct: 175 tggatgatgcagatgacatctacatgcggtcttggactggcaccatcattggtccacata 234 Query: 341 acactgtccacgagggccggatttatcagttgaagcttttctgtgacaaggactatccag 400 | | |||||| || || || || || ||| ||||||| ||||||||||||||||| |||| Sbjct: 235 atagtgtccatgaaggtcgcatctaccagctgaagctgttctgtgacaaggactacccag 294 Query: 401 acaggccaccgactgttaggtttcactcaagaatcaa 437 | | |||||| |||| ||||||| ||||||||||| Sbjct: 295 agaagccaccatctgtccggtttcattcaagaatcaa 331
>ref|NM_129165.2| Arabidopsis thaliana ubiquitin conjugating enzyme/ ubiquitin-like activating enzyme (AT2G36060) mRNA, complete cds Length = 837 Score = 137 bits (69), Expect = 8e-29 Identities = 144/169 (85%) Strand = Plus / Plus Query: 221 tgctggaagagcttgagagaggagagaagggcattggggatggaacagttagctatggaa 280 ||||||| |||||||| | |||||||| || ||||| |||||||| || |||||||||| Sbjct: 234 tgctggaggagcttgaacgtggagagaaaggtattggagatggaactgtgagctatggaa 293 Query: 281 tggatgacgcagatgatatctacatgcgctcctggacaggaacaataattggtccccaca 340 ||||||| | |||||| || || |||||||| ||||| || || || || ||||| |||| Sbjct: 294 tggatgatggagatgacatttatatgcgctcttggactggcactatcatcggtcctcaca 353 Query: 341 acactgtccacgagggccggatttatcagttgaagcttttctgtgacaa 389 ||||||| || ||||| |||||||||||||||||||| ||||||||||| Sbjct: 354 acactgtacatgagggtcggatttatcagttgaagctcttctgtgacaa 402
>gb|BT017181.1| Zea mays clone EL01N0369E04.c mRNA sequence Length = 822 Score = 137 bits (69), Expect = 8e-29 Identities = 201/245 (82%) Strand = Plus / Plus Query: 241 ggagagaagggcattggggatggaacagttagctatggaatggatgacgcagatgatatc 300 ||||||||||||||||| ||||| ||||| ||||||||||||||||| || ||||| ||| Sbjct: 225 ggagagaagggcattggtgatgggacagtgagctatggaatggatgatgctgatgacatc 284 Query: 301 tacatgcgctcctggacaggaacaataattggtccccacaacactgtccacgagggccgg 360 |||||||| || ||||| || || || ||||| || ||||| ||||| || ||||| || Sbjct: 285 tacatgcggtcatggactggtaccatcattggccctcacaatactgtacatgagggtcgc 344 Query: 361 atttatcagttgaagcttttctgtgacaaggactatccagacaggccaccgactgttagg 420 || || ||| ||||| | || |||||||| |||||||| || | |||||| |||| || Sbjct: 345 atctaccagctgaagttgttttgtgacaaagactatccggagaagccaccatctgtcaga 404 Query: 421 tttcactcaagaatcaacatgacctgtgtaaatgccgagactggattggtggaccaaagg 480 || |||||||||||||||||||| || || ||| |||||| ||| |||| || | |||| Sbjct: 405 ttccactcaagaatcaacatgacatgcgttaatcacgagacaggaatggttgatccaagg 464 Query: 481 aagtt 485 ||||| Sbjct: 465 aagtt 469
>gb|AY093382.1| Arabidopsis thaliana putative ubiquitin-conjugating enzyme (At2g36060) mRNA, complete cds Length = 531 Score = 137 bits (69), Expect = 8e-29 Identities = 144/169 (85%) Strand = Plus / Plus Query: 221 tgctggaagagcttgagagaggagagaagggcattggggatggaacagttagctatggaa 280 ||||||| |||||||| | |||||||| || ||||| |||||||| || |||||||||| Sbjct: 50 tgctggaggagcttgaacgtggagagaaaggtattggagatggaactgtgagctatggaa 109 Query: 281 tggatgacgcagatgatatctacatgcgctcctggacaggaacaataattggtccccaca 340 ||||||| | |||||| || || |||||||| ||||| || || || || ||||| |||| Sbjct: 110 tggatgatggagatgacatttatatgcgctcttggactggcactatcatcggtcctcaca 169 Query: 341 acactgtccacgagggccggatttatcagttgaagcttttctgtgacaa 389 ||||||| || ||||| |||||||||||||||||||| ||||||||||| Sbjct: 170 acactgtacatgagggtcggatttatcagttgaagctcttctgtgacaa 218
>gb|AY062760.1| Arabidopsis thaliana putative ubiquitin-conjugating enzyme (At2g36060; F11F19.3) mRNA, complete cds Length = 769 Score = 137 bits (69), Expect = 8e-29 Identities = 144/169 (85%) Strand = Plus / Plus Query: 221 tgctggaagagcttgagagaggagagaagggcattggggatggaacagttagctatggaa 280 ||||||| |||||||| | |||||||| || ||||| |||||||| || |||||||||| Sbjct: 168 tgctggaggagcttgaacgtggagagaaaggtattggagatggaactgtgagctatggaa 227 Query: 281 tggatgacgcagatgatatctacatgcgctcctggacaggaacaataattggtccccaca 340 ||||||| | |||||| || || |||||||| ||||| || || || || ||||| |||| Sbjct: 228 tggatgatggagatgacatttatatgcgctcttggactggcactatcatcggtcctcaca 287 Query: 341 acactgtccacgagggccggatttatcagttgaagcttttctgtgacaa 389 ||||||| || ||||| |||||||||||||||||||| ||||||||||| Sbjct: 288 acactgtacatgagggtcggatttatcagttgaagctcttctgtgacaa 336
>dbj|AK104965.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-121-C07, full insert sequence Length = 833 Score = 137 bits (69), Expect = 8e-29 Identities = 180/217 (82%) Strand = Plus / Plus Query: 221 tgctggaagagcttgagagaggagagaagggcattggggatggaacagttagctatggaa 280 |||| ||||||||||| | || || ||||||||||| |||||||| || |||||||||| Sbjct: 117 tgctagaagagcttgaacgtggtgaaaagggcattggagatggaaccgtgagctatggaa 176 Query: 281 tggatgacgcagatgatatctacatgcgctcctggacaggaacaataattggtccccaca 340 ||||||| |||||||| ||||||||||| || ||||| || || || |||||||| || | Sbjct: 177 tggatgatgcagatgacatctacatgcggtcttggactggcaccatcattggtccacata 236 Query: 341 acactgtccacgagggccggatttatcagttgaagcttttctgtgacaaggactatccag 400 | | |||||| || || || || || ||| ||||||| ||||||||||||||||| |||| Sbjct: 237 atagtgtccatgaaggtcgcatctaccagctgaagctgttctgtgacaaggactacccag 296 Query: 401 acaggccaccgactgttaggtttcactcaagaatcaa 437 | | |||||| |||| ||||||| ||||||||||| Sbjct: 297 agaagccaccatctgtccggtttcattcaagaatcaa 333
>dbj|AK073729.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033054B21, full insert sequence Length = 853 Score = 137 bits (69), Expect = 8e-29 Identities = 180/217 (82%) Strand = Plus / Plus Query: 221 tgctggaagagcttgagagaggagagaagggcattggggatggaacagttagctatggaa 280 |||| ||||||||||| | || || ||||||||||| |||||||| || |||||||||| Sbjct: 168 tgctagaagagcttgaacgtggtgaaaagggcattggagatggaaccgtgagctatggaa 227 Query: 281 tggatgacgcagatgatatctacatgcgctcctggacaggaacaataattggtccccaca 340 ||||||| |||||||| ||||||||||| || ||||| || || || |||||||| || | Sbjct: 228 tggatgatgcagatgacatctacatgcggtcttggactggcaccatcattggtccacata 287 Query: 341 acactgtccacgagggccggatttatcagttgaagcttttctgtgacaaggactatccag 400 | | |||||| || || || || || ||| ||||||| ||||||||||||||||| |||| Sbjct: 288 atagtgtccatgaaggtcgcatctaccagctgaagctgttctgtgacaaggactacccag 347 Query: 401 acaggccaccgactgttaggtttcactcaagaatcaa 437 | | |||||| |||| ||||||| ||||||||||| Sbjct: 348 agaagccaccatctgtccggtttcattcaagaatcaa 384
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 131 bits (66), Expect = 5e-27 Identities = 108/122 (88%) Strand = Plus / Plus Query: 211 aactttagactgctggaagagcttgagagaggagagaagggcattggggatggaacagtt 270 |||||||||||||| |||||||||||| |||| |||||||||||||| ||||| ||||| Sbjct: 28581840 aactttagactgcttgaagagcttgagcgaggtgagaagggcattggtgatgggacagtg 28581899 Query: 271 agctatggaatggatgacgcagatgatatctacatgcgctcctggacaggaacaataatt 330 ||||||||||||||||| || ||||| || || ||||| |||||||||||||| || ||| Sbjct: 28581900 agctatggaatggatgatgctgatgacatatatatgcgttcctggacaggaactatcatt 28581959 Query: 331 gg 332 || Sbjct: 28581960 gg 28581961 Score = 54.0 bits (27), Expect = 9e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 343 actgtccacgagggccggatttatcagttgaagcttttctgtgacaaggactatccagac 402 ||||| || ||||| || || |||||||||||| | |||||||| | |||||||||||| Sbjct: 28582064 actgttcatgagggacgaatctatcagttgaagttgttctgtgatacagactatccagac 28582123 Query: 403 aggccaccgactgtt 417 || ||||| |||||| Sbjct: 28582124 agaccacctactgtt 28582138
>gb|AC082645.13|AC082645 Oryza sativa chromosome 3 BAC OSJNBb0033N16 genomic sequence, complete sequence Length = 143681 Score = 131 bits (66), Expect = 5e-27 Identities = 108/122 (88%) Strand = Plus / Plus Query: 211 aactttagactgctggaagagcttgagagaggagagaagggcattggggatggaacagtt 270 |||||||||||||| |||||||||||| |||| |||||||||||||| ||||| ||||| Sbjct: 84646 aactttagactgcttgaagagcttgagcgaggtgagaagggcattggtgatgggacagtg 84705 Query: 271 agctatggaatggatgacgcagatgatatctacatgcgctcctggacaggaacaataatt 330 ||||||||||||||||| || ||||| || || ||||| |||||||||||||| || ||| Sbjct: 84706 agctatggaatggatgatgctgatgacatatatatgcgttcctggacaggaactatcatt 84765 Query: 331 gg 332 || Sbjct: 84766 gg 84767 Score = 54.0 bits (27), Expect = 9e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 343 actgtccacgagggccggatttatcagttgaagcttttctgtgacaaggactatccagac 402 ||||| || ||||| || || |||||||||||| | |||||||| | |||||||||||| Sbjct: 84870 actgttcatgagggacgaatctatcagttgaagttgttctgtgatacagactatccagac 84929 Query: 403 aggccaccgactgtt 417 || ||||| |||||| Sbjct: 84930 agaccacctactgtt 84944
>gb|AY089084.1| Arabidopsis thaliana clone 29951 mRNA, complete sequence Length = 798 Score = 129 bits (65), Expect = 2e-26 Identities = 128/149 (85%) Strand = Plus / Plus Query: 241 ggagagaagggcattggggatggaacagttagctatggaatggatgacgcagatgatatc 300 |||||||| || ||||| |||||||| || ||||||||||||||||| | |||||| || Sbjct: 230 ggagagaaaggtattggagatggaactgtgagctatggaatggatgatggagatgacatt 289 Query: 301 tacatgcgctcctggacaggaacaataattggtccccacaacactgtccacgagggccgg 360 || |||||||| ||||| || || || || ||||| ||||||||||| || ||||| ||| Sbjct: 290 tatatgcgctcttggactggcactatcatcggtcctcacaacactgtacatgagggtcgg 349 Query: 361 atttatcagttgaagcttttctgtgacaa 389 ||||||||||||||||| ||||||||||| Sbjct: 350 atttatcagttgaagctcttctgtgacaa 378
>gb|DQ245427.1| Zea mays clone 15420 mRNA sequence Length = 765 Score = 125 bits (63), Expect = 3e-25 Identities = 156/187 (83%) Strand = Plus / Plus Query: 209 ggaactttagactgctggaagagcttgagagaggagagaagggcattggggatggaacag 268 ||||||| || || || ||||||||||| | ||||||||||||||||| ||||| |||| Sbjct: 118 ggaacttcaggctcctagaagagcttgaacgtggagagaagggcattggagatgggacag 177 Query: 269 ttagctatggaatggatgacgcagatgatatctacatgcgctcctggacaggaacaataa 328 | |||||||||||||||||||||||||| ||||||||||| || ||||| || || || | Sbjct: 178 tgagctatggaatggatgacgcagatgacatctacatgcgatcatggactggcactatta 237 Query: 329 ttggtccccacaacactgtccacgagggccggatttatcagttgaagcttttctgtgaca 388 |||| || || || || ||||| ||||| || || || ||| ||||| | ||||| |||| Sbjct: 238 ttggccctcataataccgtccatgagggtcgcatctaccagctgaagttgttctgcgaca 297 Query: 389 aggacta 395 ||||||| Sbjct: 298 aggacta 304
>gb|BT016303.1| Zea mays clone Contig136 mRNA sequence Length = 790 Score = 125 bits (63), Expect = 3e-25 Identities = 156/187 (83%) Strand = Plus / Plus Query: 209 ggaactttagactgctggaagagcttgagagaggagagaagggcattggggatggaacag 268 ||||||| || || || ||||||||||| | ||||||||||||||||| ||||| |||| Sbjct: 120 ggaacttcaggctcctagaagagcttgaacgtggagagaagggcattggagatgggacag 179 Query: 269 ttagctatggaatggatgacgcagatgatatctacatgcgctcctggacaggaacaataa 328 | |||||||||||||||||||||||||| ||||||||||| || ||||| || || || | Sbjct: 180 tgagctatggaatggatgacgcagatgacatctacatgcgatcatggactggcactatta 239 Query: 329 ttggtccccacaacactgtccacgagggccggatttatcagttgaagcttttctgtgaca 388 |||| || || || || ||||| ||||| || || || ||| ||||| | ||||| |||| Sbjct: 240 ttggccctcataataccgtccatgagggtcgcatctaccagctgaagttgttctgcgaca 299 Query: 389 aggacta 395 ||||||| Sbjct: 300 aggacta 306
>gb|AY103581.1| Zea mays PCO136340 mRNA sequence Length = 1242 Score = 125 bits (63), Expect = 3e-25 Identities = 156/187 (83%) Strand = Plus / Plus Query: 209 ggaactttagactgctggaagagcttgagagaggagagaagggcattggggatggaacag 268 ||||||| || || || ||||||||||| | ||||||||||||||||| ||||| |||| Sbjct: 206 ggaacttcaggctcctagaagagcttgaacgtggagagaagggcattggagatgggacag 265 Query: 269 ttagctatggaatggatgacgcagatgatatctacatgcgctcctggacaggaacaataa 328 | |||||||||||||||||||||||||| ||||||||||| || ||||| || || || | Sbjct: 266 tgagctatggaatggatgacgcagatgacatctacatgcgatcatggactggcactatta 325 Query: 329 ttggtccccacaacactgtccacgagggccggatttatcagttgaagcttttctgtgaca 388 |||| || || || || ||||| ||||| || || || ||| ||||| | ||||| |||| Sbjct: 326 ttggccctcataataccgtccatgagggtcgcatctaccagctgaagttgttctgcgaca 385 Query: 389 aggacta 395 ||||||| Sbjct: 386 aggacta 392
>emb|CT831939.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA023B04, full insert sequence Length = 390 Score = 119 bits (60), Expect = 2e-23 Identities = 159/192 (82%) Strand = Plus / Plus Query: 221 tgctggaagagcttgagagaggagagaagggcattggggatggaacagttagctatggaa 280 |||| ||||||||||| | || || ||||||||||| |||||||| || |||||||||| Sbjct: 121 tgctagaagagcttgaacgtggtgaaaagggcattggagatggaaccgtgagctatggaa 180 Query: 281 tggatgacgcagatgatatctacatgcgctcctggacaggaacaataattggtccccaca 340 ||||||| |||||||| ||||||||||| || ||||| || || || |||||||| || | Sbjct: 181 tggatgatgcagatgacatctacatgcggtcttggactggcaccatcattggtccacata 240 Query: 341 acactgtccacgagggccggatttatcagttgaagcttttctgtgacaaggactatccag 400 | | |||||| || || || || || ||| ||||||| ||||||||||||||||| ||| Sbjct: 241 atagtgtccatgaaggtcgcatctaccagctgaagctgttctgtgacaaggactacccaa 300 Query: 401 acaggccaccga 412 | | |||||||| Sbjct: 301 agaagccaccga 312
>ref|NM_179928.1| Arabidopsis thaliana ubiquitin conjugating enzyme/ ubiquitin-like activating enzyme (AT2G36060) mRNA, complete cds Length = 840 Score = 115 bits (58), Expect = 3e-22 Identities = 144/172 (83%), Gaps = 3/172 (1%) Strand = Plus / Plus Query: 221 tgctggaagagcttgagagaggagagaagggcattggggatggaacagttagctatggaa 280 ||||||| |||||||| | |||||||| || ||||| |||||||| || |||||||||| Sbjct: 234 tgctggaggagcttgaacgtggagagaaaggtattggagatggaactgtgagctatggaa 293 Query: 281 tggatgacgcagatgatatctacatgcgctcctggacaggaacaataattggtccccaca 340 ||||||| | |||||| || || |||||||| ||||| || || || || ||||| |||| Sbjct: 294 tggatgatggagatgacatttatatgcgctcttggactggcactatcatcggtcctcaca 353 Query: 341 ac---actgtccacgagggccggatttatcagttgaagcttttctgtgacaa 389 || ||||| || ||||| |||||||||||||||||||| ||||||||||| Sbjct: 354 acgtaactgtacatgagggtcggatttatcagttgaagctcttctgtgacaa 405
>gb|DQ097727.1| Arachis hypogaea ubiquitin-conjugating enzyme 2 mRNA, complete cds Length = 818 Score = 115 bits (58), Expect = 3e-22 Identities = 100/114 (87%) Strand = Plus / Plus Query: 224 tggaagagcttgagagaggagagaagggcattggggatggaacagttagctatggaatgg 283 ||||||||||||||||||| |||||||| ||||| |||||||| || ||||||||||||| Sbjct: 157 tggaagagcttgagagaggtgagaagggaattggagatggaactgtaagctatggaatgg 216 Query: 284 atgacgcagatgatatctacatgcgctcctggacaggaacaataattggtcccc 337 |||| || |||||||||||||||| || ||||| || ||||| || ||||||| Sbjct: 217 atgatgctgatgatatctacatgcaatcatggactgggacaattataggtcccc 270
>gb|AY107839.1| Zea mays PCO143146 mRNA sequence Length = 1245 Score = 115 bits (58), Expect = 3e-22 Identities = 181/222 (81%) Strand = Plus / Plus Query: 195 agttgtcgtgccaaggaactttagactgctggaagagcttgagagaggagagaagggcat 254 ||||||||| || || |||||||| ||||| ||||| || || | || ||||||||||| Sbjct: 249 agttgtcgttcccagaaactttaggctgctagaagaactagaacgtggtgagaagggcat 308 Query: 255 tggggatggaacagttagctatggaatggatgacgcagatgatatctacatgcgctcctg 314 ||| |||||||| || |||||||| ||||| || || ||||| || | ||||| ||||| Sbjct: 309 tggtgatggaactgtgagctatgggatggacgatgctgatgacatatttatgcggtcctg 368 Query: 315 gacaggaacaataattggtccccacaacactgtccacgagggccggatttatcagttgaa 374 ||||||||| || |||||||| | ||||||||| |||||||| || || |||||||| || Sbjct: 369 gacaggaactatcattggtcctcccaacactgttcacgagggacgaatctatcagttaaa 428 Query: 375 gcttttctgtgacaaggactatccagacaggccaccgactgt 416 ||| || ||||| | || |||||||| | ||||||||||| Sbjct: 429 gctgttttgtgatacagattatccagataaaccaccgactgt 470
>gb|DQ235194.1| Solanum tuberosum clone 168B03 ubiquitin-conjugating enzyme family protein-like mRNA, complete cds Length = 682 Score = 109 bits (55), Expect = 2e-20 Identities = 130/155 (83%) Strand = Plus / Plus Query: 244 gagaagggcattggggatggaacagttagctatggaatggatgacgcagatgatatctac 303 |||||||| ||||| ||||| ||||| |||||||| |||||||| | ||||||||| || Sbjct: 178 gagaagggtattggagatgggacagtgagctatggtatggatgatggagatgatatttat 237 Query: 304 atgcgctcctggacaggaacaataattggtccccacaacactgtccacgagggccggatt 363 ||||| || ||||| || || || |||||||| ||||| |||| || || ||||| ||| Sbjct: 238 atgcgttcttggactggcaccattattggtcctcacaattctgtgcatgaaggccgcatt 297 Query: 364 tatcagttgaagcttttctgtgacaaggactatcc 398 |||||||||||||| ||||| |||||||| ||||| Sbjct: 298 tatcagttgaagctattctgcgacaaggattatcc 332
>gb|DQ191643.1| Solanum tuberosum ubiquitin-conjugating enzyme family protein-like protein mRNA, complete cds Length = 764 Score = 109 bits (55), Expect = 2e-20 Identities = 130/155 (83%) Strand = Plus / Plus Query: 244 gagaagggcattggggatggaacagttagctatggaatggatgacgcagatgatatctac 303 |||||||| ||||| ||||| ||||| |||||||| |||||||| | ||||||||| || Sbjct: 170 gagaagggtattggagatgggacagtgagctatggtatggatgatggagatgatatttat 229 Query: 304 atgcgctcctggacaggaacaataattggtccccacaacactgtccacgagggccggatt 363 ||||| || ||||| || || || |||||||| ||||| |||| || || ||||| ||| Sbjct: 230 atgcgttcttggactggcaccattattggtcctcacaattctgtgcatgaaggccgcatt 289 Query: 364 tatcagttgaagcttttctgtgacaaggactatcc 398 |||||||||||||| ||||| |||||||| ||||| Sbjct: 290 tatcagttgaagctattctgcgacaaggattatcc 324
>gb|DQ246086.1| Zea mays clone 15047 mRNA sequence Length = 907 Score = 107 bits (54), Expect = 7e-20 Identities = 123/146 (84%) Strand = Plus / Plus Query: 211 aactttagactgctggaagagcttgagagaggagagaagggcattggggatggaacagtt 270 |||||||| ||||| ||||| || || | || |||||||||||||| |||||||| || Sbjct: 141 aactttaggctgctagaagaactagaacgtggtgagaagggcattggtgatggaactgtg 200 Query: 271 agctatggaatggatgacgcagatgatatctacatgcgctcctggacaggaacaataatt 330 |||||||| |||||||| || ||||| || || ||||| |||||||||||||| |||||| Sbjct: 201 agctatgggatggatgatgctgatgacatatatatgcggtcctggacaggaactataatt 260 Query: 331 ggtccccacaacactgtccacgaggg 356 ||||| | ||| ||||| |||||||| Sbjct: 261 ggtcctcccaatactgttcacgaggg 286
>gb|AY587772.1| Tamarix androssowii ubiquitin-conjugating enzyme family protein mRNA, complete cds Length = 607 Score = 107 bits (54), Expect = 7e-20 Identities = 123/146 (84%) Strand = Plus / Plus Query: 253 attggggatggaacagttagctatggaatggatgacgcagatgatatctacatgcgctcc 312 ||||| ||||||| || || ||||| |||||||| | ||||||||| || ||||| || Sbjct: 186 attggagatggaagtgtcagttatggtatggatgatggagatgatatatatatgcgttct 245 Query: 313 tggacaggaacaataattggtccccacaacactgtccacgagggccggatttatcagttg 372 |||||||| |||||||||||||| ||||| ||||| || |||||||| |||||||| || Sbjct: 246 tggacaggcacaataattggtcctcacaatactgtacatgagggccgcatttatcaactg 305 Query: 373 aagcttttctgtgacaaggactatcc 398 ||||| ||||||||||| || ||||| Sbjct: 306 aagctcttctgtgacaaagattatcc 331
>gb|AC150979.15| Medicago truncatula clone mth2-115a17, complete sequence Length = 152779 Score = 103 bits (52), Expect = 1e-18 Identities = 70/76 (92%) Strand = Plus / Minus Query: 224 tggaagagcttgagagaggagagaagggcattggggatggaacagttagctatggaatgg 283 |||||||||||||| |||| |||||||| ||||| |||||||| |||||||||||||||| Sbjct: 105553 tggaagagcttgagcgaggtgagaagggaattggagatggaactgttagctatggaatgg 105494 Query: 284 atgacgcagatgatat 299 ||||||| |||||||| Sbjct: 105493 atgacgctgatgatat 105478
>gb|AC140035.9| Medicago truncatula clone mth2-25n18, complete sequence Length = 120870 Score = 103 bits (52), Expect = 1e-18 Identities = 70/76 (92%) Strand = Plus / Minus Query: 224 tggaagagcttgagagaggagagaagggcattggggatggaacagttagctatggaatgg 283 |||||||||||||| |||| |||||||| ||||| |||||||| |||||||||||||||| Sbjct: 2885 tggaagagcttgagcgaggtgagaagggaattggagatggaactgttagctatggaatgg 2826 Query: 284 atgacgcagatgatat 299 ||||||| |||||||| Sbjct: 2825 atgacgctgatgatat 2810
>dbj|AP004536.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT15N19, TM0097b, complete sequence Length = 78574 Score = 101 bits (51), Expect = 4e-18 Identities = 90/103 (87%) Strand = Plus / Minus Query: 224 tggaagagcttgagagaggagagaagggcattggggatggaacagttagctatggaatgg 283 |||||||||||||| |||| |||||||| ||||| |||||||| || ||||||||||||| Sbjct: 75157 tggaagagcttgagcgaggtgagaagggaattggagatggaactgtaagctatggaatgg 75098 Query: 284 atgacgcagatgatatctacatgcgctcctggacaggaacaat 326 | ||||| |||||||| ||||||| || ||||| |||||||| Sbjct: 75097 acgacgctgatgatatatacatgcagtcatggactggaacaat 75055 Score = 44.1 bits (22), Expect = 0.84 Identities = 34/38 (89%) Strand = Plus / Minus Query: 364 tatcagttgaagcttttctgtgacaaggactatccaga 401 ||||||||||| || || |||| ||||||||||||||| Sbjct: 74483 tatcagttgaaactgttttgtggcaaggactatccaga 74446
>ref|NM_102175.2| Arabidopsis thaliana ubiquitin conjugating enzyme/ ubiquitin-like activating enzyme (AT1G23260) mRNA, complete cds Length = 772 Score = 95.6 bits (48), Expect = 3e-16 Identities = 81/92 (88%) Strand = Plus / Plus Query: 208 aggaactttagactgctggaagagcttgagagaggagagaagggcattggggatggaaca 267 |||||||||||| || ||||||||||||| ||||| ||||| || ||||| ||||| || Sbjct: 148 aggaactttagattgttggaagagcttgaaagaggtgagaaaggtattggagatggtact 207 Query: 268 gttagctatggaatggatgacgcagatgatat 299 |||||||||||||||||||| || |||||||| Sbjct: 208 gttagctatggaatggatgatgctgatgatat 239 Score = 42.1 bits (21), Expect = 3.3 Identities = 48/57 (84%) Strand = Plus / Plus Query: 366 tcagttgaagcttttctgtgacaaggactatccagacaggccaccgactgttaggtt 422 |||| ||||||||||||||| ||||| || || || || ||||||||||| ||||| Sbjct: 306 tcagctgaagcttttctgtggtaaggagtaccctgaaagtccaccgactgtgaggtt 362
>gb|AY093340.1| Arabidopsis thaliana similar to DNA binding protein (At1g23260) mRNA, complete cds Length = 618 Score = 95.6 bits (48), Expect = 3e-16 Identities = 81/92 (88%) Strand = Plus / Plus Query: 208 aggaactttagactgctggaagagcttgagagaggagagaagggcattggggatggaaca 267 |||||||||||| || ||||||||||||| ||||| ||||| || ||||| ||||| || Sbjct: 34 aggaactttagattgttggaagagcttgaaagaggtgagaaaggtattggagatggtact 93 Query: 268 gttagctatggaatggatgacgcagatgatat 299 |||||||||||||||||||| || |||||||| Sbjct: 94 gttagctatggaatggatgatgctgatgatat 125 Score = 42.1 bits (21), Expect = 3.3 Identities = 48/57 (84%) Strand = Plus / Plus Query: 366 tcagttgaagcttttctgtgacaaggactatccagacaggccaccgactgttaggtt 422 |||| ||||||||||||||| ||||| || || || || ||||||||||| ||||| Sbjct: 192 tcagctgaagcttttctgtggtaaggagtaccctgaaagtccaccgactgtgaggtt 248
>gb|AY059896.1| Arabidopsis thaliana similar to DNA binding protein (At1g23260; F26F24.10) mRNA, complete cds Length = 771 Score = 95.6 bits (48), Expect = 3e-16 Identities = 81/92 (88%) Strand = Plus / Plus Query: 208 aggaactttagactgctggaagagcttgagagaggagagaagggcattggggatggaaca 267 |||||||||||| || ||||||||||||| ||||| ||||| || ||||| ||||| || Sbjct: 148 aggaactttagattgttggaagagcttgaaagaggtgagaaaggtattggagatggtact 207 Query: 268 gttagctatggaatggatgacgcagatgatat 299 |||||||||||||||||||| || |||||||| Sbjct: 208 gttagctatggaatggatgatgctgatgatat 239 Score = 42.1 bits (21), Expect = 3.3 Identities = 48/57 (84%) Strand = Plus / Plus Query: 366 tcagttgaagcttttctgtgacaaggactatccagacaggccaccgactgttaggtt 422 |||| ||||||||||||||| ||||| || || || || ||||||||||| ||||| Sbjct: 306 tcagctgaagcttttctgtggtaaggagtaccctgaaagtccaccgactgtgaggtt 362
>gb|AC005292.4|AC005292 Genomic sequence for Arabidopsis thaliana BAC F26F24 from chromosome I, complete sequence Length = 99053 Score = 95.6 bits (48), Expect = 3e-16 Identities = 81/92 (88%) Strand = Plus / Minus Query: 208 aggaactttagactgctggaagagcttgagagaggagagaagggcattggggatggaaca 267 |||||||||||| || ||||||||||||| ||||| ||||| || ||||| ||||| || Sbjct: 34675 aggaactttagattgttggaagagcttgaaagaggtgagaaaggtattggagatggtact 34616 Query: 268 gttagctatggaatggatgacgcagatgatat 299 |||||||||||||||||||| || |||||||| Sbjct: 34615 gttagctatggaatggatgatgctgatgatat 34584 Score = 42.1 bits (21), Expect = 3.3 Identities = 48/57 (84%) Strand = Plus / Minus Query: 366 tcagttgaagcttttctgtgacaaggactatccagacaggccaccgactgttaggtt 422 |||| ||||||||||||||| ||||| || || || || ||||||||||| ||||| Sbjct: 34128 tcagctgaagcttttctgtggtaaggagtaccctgaaagtccaccgactgtgaggtt 34072
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9 Length = 22696651 Score = 93.7 bits (47), Expect = 1e-15 Identities = 98/115 (85%) Strand = Plus / Minus Query: 221 tgctggaagagcttgagagaggagagaagggcattggggatggaacagttagctatggaa 280 |||| ||||||||||| | || || ||||||||||| |||||||| || |||||||||| Sbjct: 7152189 tgctagaagagcttgaacgtggtgaaaagggcattggagatggaaccgtgagctatggaa 7152130 Query: 281 tggatgacgcagatgatatctacatgcgctcctggacaggaacaataattggtcc 335 ||||||| |||||||| ||||||||||| || ||||| || || || |||||||| Sbjct: 7152129 tggatgatgcagatgacatctacatgcggtcttggactggcaccatcattggtcc 7152075 Score = 61.9 bits (31), Expect = 4e-06 Identities = 58/67 (86%) Strand = Plus / Minus Query: 371 tgaagcttttctgtgacaaggactatccagacaggccaccgactgttaggtttcactcaa 430 ||||||| ||||||||||||||||| ||||| | |||||| |||| ||||||| |||| Sbjct: 7151629 tgaagctgttctgtgacaaggactacccagagaagccaccatctgtccggtttcattcaa 7151570 Query: 431 gaatcaa 437 ||||||| Sbjct: 7151569 gaatcaa 7151563
>dbj|AP004011.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1381_H04 Length = 130961 Score = 93.7 bits (47), Expect = 1e-15 Identities = 98/115 (85%) Strand = Plus / Minus Query: 221 tgctggaagagcttgagagaggagagaagggcattggggatggaacagttagctatggaa 280 |||| ||||||||||| | || || ||||||||||| |||||||| || |||||||||| Sbjct: 4294 tgctagaagagcttgaacgtggtgaaaagggcattggagatggaaccgtgagctatggaa 4235 Query: 281 tggatgacgcagatgatatctacatgcgctcctggacaggaacaataattggtcc 335 ||||||| |||||||| ||||||||||| || ||||| || || || |||||||| Sbjct: 4234 tggatgatgcagatgacatctacatgcggtcttggactggcaccatcattggtcc 4180 Score = 61.9 bits (31), Expect = 4e-06 Identities = 58/67 (86%) Strand = Plus / Minus Query: 371 tgaagcttttctgtgacaaggactatccagacaggccaccgactgttaggtttcactcaa 430 ||||||| ||||||||||||||||| ||||| | |||||| |||| ||||||| |||| Sbjct: 3734 tgaagctgttctgtgacaaggactacccagagaagccaccatctgtccggtttcattcaa 3675 Query: 431 gaatcaa 437 ||||||| Sbjct: 3674 gaatcaa 3668
>dbj|AP004756.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0592C05 Length = 150478 Score = 93.7 bits (47), Expect = 1e-15 Identities = 98/115 (85%) Strand = Plus / Minus Query: 221 tgctggaagagcttgagagaggagagaagggcattggggatggaacagttagctatggaa 280 |||| ||||||||||| | || || ||||||||||| |||||||| || |||||||||| Sbjct: 104268 tgctagaagagcttgaacgtggtgaaaagggcattggagatggaaccgtgagctatggaa 104209 Query: 281 tggatgacgcagatgatatctacatgcgctcctggacaggaacaataattggtcc 335 ||||||| |||||||| ||||||||||| || ||||| || || || |||||||| Sbjct: 104208 tggatgatgcagatgacatctacatgcggtcttggactggcaccatcattggtcc 104154 Score = 61.9 bits (31), Expect = 4e-06 Identities = 58/67 (86%) Strand = Plus / Minus Query: 371 tgaagcttttctgtgacaaggactatccagacaggccaccgactgttaggtttcactcaa 430 ||||||| ||||||||||||||||| ||||| | |||||| |||| ||||||| |||| Sbjct: 103708 tgaagctgttctgtgacaaggactacccagagaagccaccatctgtccggtttcattcaa 103649 Query: 431 gaatcaa 437 ||||||| Sbjct: 103648 gaatcaa 103642
>ref|NM_115116.3| Arabidopsis thaliana ubiquitin conjugating enzyme/ ubiquitin-like activating enzyme (AT3G52560) mRNA, complete cds Length = 864 Score = 91.7 bits (46), Expect = 4e-15 Identities = 121/146 (82%) Strand = Plus / Plus Query: 244 gagaagggcattggggatggaacagttagctatggaatggatgacgcagatgatatctac 303 ||||| || |||||||||||||| || ||||||||||||||||| | |||||| ||||| Sbjct: 202 gagaaaggtattggggatggaactgtgagctatggaatggatgatggagatgacatctat 261 Query: 304 atgcgctcctggacaggaacaataattggtccccacaacactgtccacgagggccggatt 363 ||||| || ||||| || || || || ||||| ||||||||||| || || || | || Sbjct: 262 atgcgttcttggactggcaccatcatcggtcctcacaacactgttcatgaaggtagaatc 321 Query: 364 tatcagttgaagcttttctgtgacaa 389 |||||||||||||| || |||||||| Sbjct: 322 tatcagttgaagctcttttgtgacaa 347
>gb|AY072492.1| Arabidopsis thaliana unknown protein mRNA, complete cds Length = 587 Score = 91.7 bits (46), Expect = 4e-15 Identities = 121/146 (82%) Strand = Plus / Plus Query: 244 gagaagggcattggggatggaacagttagctatggaatggatgacgcagatgatatctac 303 ||||| || |||||||||||||| || ||||||||||||||||| | |||||| ||||| Sbjct: 76 gagaaaggtattggggatggaactgtgagctatggaatggatgatggagatgacatctat 135 Query: 304 atgcgctcctggacaggaacaataattggtccccacaacactgtccacgagggccggatt 363 ||||| || ||||| || || || || ||||| ||||||||||| || || || | || Sbjct: 136 atgcgttcttggactggcaccatcatcggtcctcacaacactgttcatgaaggtagaatc 195 Query: 364 tatcagttgaagcttttctgtgacaa 389 |||||||||||||| || |||||||| Sbjct: 196 tatcagttgaagctcttttgtgacaa 221
>gb|AY085609.1| Arabidopsis thaliana clone 16125 mRNA, complete sequence Length = 832 Score = 91.7 bits (46), Expect = 4e-15 Identities = 121/146 (82%) Strand = Plus / Plus Query: 244 gagaagggcattggggatggaacagttagctatggaatggatgacgcagatgatatctac 303 ||||| || |||||||||||||| || ||||||||||||||||| | |||||| ||||| Sbjct: 203 gagaaaggtattggggatggaactgtgagctatggaatggatgatggagatgacatctat 262 Query: 304 atgcgctcctggacaggaacaataattggtccccacaacactgtccacgagggccggatt 363 ||||| || ||||| || || || || ||||| ||||||||||| || || || | || Sbjct: 263 atgcgttcttggactggcactatcatcggtcctcacaacactgttcatgaaggtagaatc 322 Query: 364 tatcagttgaagcttttctgtgacaa 389 |||||||||||||| || |||||||| Sbjct: 323 tatcagttgaagctcttttgtgacaa 348
>gb|AY042846.1| Arabidopsis thaliana Unknown protein mRNA, complete cds Length = 810 Score = 91.7 bits (46), Expect = 4e-15 Identities = 121/146 (82%) Strand = Plus / Plus Query: 244 gagaagggcattggggatggaacagttagctatggaatggatgacgcagatgatatctac 303 ||||| || |||||||||||||| || ||||||||||||||||| | |||||| ||||| Sbjct: 151 gagaaaggtattggggatggaactgtgagctatggaatggatgatggagatgacatctat 210 Query: 304 atgcgctcctggacaggaacaataattggtccccacaacactgtccacgagggccggatt 363 ||||| || ||||| || || || || ||||| ||||||||||| || || || | || Sbjct: 211 atgcgttcttggactggcaccatcatcggtcctcacaacactgttcatgaaggtagaatc 270 Query: 364 tatcagttgaagcttttctgtgacaa 389 |||||||||||||| || |||||||| Sbjct: 271 tatcagttgaagctcttttgtgacaa 296
>emb|BX825709.1|CNS0A69P Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL58ZC12 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 838 Score = 91.7 bits (46), Expect = 4e-15 Identities = 121/146 (82%) Strand = Plus / Plus Query: 244 gagaagggcattggggatggaacagttagctatggaatggatgacgcagatgatatctac 303 ||||| || |||||||||||||| || ||||||||||||||||| | |||||| ||||| Sbjct: 177 gagaaaggtattggggatggaactgtgagctatggaatggatgatggagatgacatctat 236 Query: 304 atgcgctcctggacaggaacaataattggtccccacaacactgtccacgagggccggatt 363 ||||| || ||||| || || || || ||||| ||||||||||| || || || | || Sbjct: 237 atgcgttcttggactggcaccatcatcggtcctcacaacactgttcatgaaggtagaatc 296 Query: 364 tatcagttgaagcttttctgtgacaa 389 |||||||||||||| || |||||||| Sbjct: 297 tatcagttgaagctcttttgtgacaa 322
>gb|AC007017.4| Arabidopsis thaliana chromosome 2 clone F11F19 map g6825, complete sequence Length = 120938 Score = 75.8 bits (38), Expect = 2e-10 Identities = 101/122 (82%) Strand = Plus / Plus Query: 221 tgctggaagagcttgagagaggagagaagggcattggggatggaacagttagctatggaa 280 ||||||| |||||||| | |||||||| || ||||| |||||||| || |||||||||| Sbjct: 13429 tgctggaggagcttgaacgtggagagaaaggtattggagatggaactgtgagctatggaa 13488 Query: 281 tggatgacgcagatgatatctacatgcgctcctggacaggaacaataattggtccccaca 340 ||||||| | |||||| || || |||||||| ||||| || || || || ||||| |||| Sbjct: 13489 tggatgatggagatgacatttatatgcgctcttggactggcactatcatcggtcctcaca 13548 Query: 341 ac 342 || Sbjct: 13549 ac 13550 Score = 61.9 bits (31), Expect = 4e-06 Identities = 43/47 (91%) Strand = Plus / Plus Query: 343 actgtccacgagggccggatttatcagttgaagcttttctgtgacaa 389 ||||| || ||||| |||||||||||||||||||| ||||||||||| Sbjct: 13677 actgtacatgagggtcggatttatcagttgaagctcttctgtgacaa 13723
>gb|DQ642432.1| Zea mays RFLP probe umc107 (CBM 1.10) genomic sequence Length = 1105 Score = 73.8 bits (37), Expect = 9e-10 Identities = 103/125 (82%) Strand = Plus / Plus Query: 211 aactttagactgctggaagagcttgagagaggagagaagggcattggggatggaacagtt 270 |||||||| ||||| ||||| || || | || |||||||||||||| |||||||| || Sbjct: 15 aactttaggctgctagaagaactagaacgtggtgagaagggcattggtgatggaactgtg 74 Query: 271 agctatggaatggatgacgcagatgatatctacatgcgctcctggacaggaacaataatt 330 |||||||| ||||| || || ||||| || | ||||| |||||||||||||| || ||| Sbjct: 75 agctatgggatggacgatgctgatgacatatttatgcggtcctggacaggaactatcatt 134 Query: 331 ggtcc 335 ||||| Sbjct: 135 ggtcc 139
>gb|DQ160040.1| Taraxacum officinale TO38-23 (To38-23) mRNA, partial cds Length = 475 Score = 73.8 bits (37), Expect = 9e-10 Identities = 136/169 (80%) Strand = Plus / Plus Query: 221 tgctggaagagcttgagagaggagagaagggcattggggatggaacagttagctatggaa 280 ||||||| ||||||||| | ||||| ||||| || || ||||| || || |||||||||| Sbjct: 31 tgctggaggagcttgagcgtggagaaaagggtatcggagatggcactgtgagctatggaa 90 Query: 281 tggatgacgcagatgatatctacatgcgctcctggacaggaacaataattggtccccaca 340 ||||||| | ||||||||||| ||||| || |||||||| || || || || || |||| Sbjct: 91 tggatgatggtgatgatatctatatgcgatcatggacaggcaccatcatcggccctcaca 150 Query: 341 acactgtccacgagggccggatttatcagttgaagcttttctgtgacaa 389 | |||| || ||||| || || || || |||||||| || |||||||| Sbjct: 151 attctgtgcatgagggtcgcatctaccaattgaagctattttgtgacaa 199
>gb|BT013203.1| Lycopersicon esculentum clone 134376R, mRNA sequence Length = 843 Score = 73.8 bits (37), Expect = 9e-10 Identities = 91/109 (83%) Strand = Plus / Plus Query: 224 tggaagagcttgagagaggagagaagggcattggggatggaacagttagctatggaatgg 283 |||| |||||||| |||||||| || || || ||||||||||| || |||||||| |||| Sbjct: 191 tggaggagcttgaaagaggagaaaaaggaataggggatggaactgtcagctatgggatgg 250 Query: 284 atgacgcagatgatatctacatgcgctcctggacaggaacaataattgg 332 |||| |||||||| | ||||||| || ||||||||||| || ||||| Sbjct: 251 atgatgcagatgacgtgtacatgcagtcatggacaggaactatcattgg 299
>ref|NM_180353.1| Arabidopsis thaliana ubiquitin conjugating enzyme/ ubiquitin-like activating enzyme (AT3G52560) mRNA, complete cds Length = 864 Score = 69.9 bits (35), Expect = 1e-08 Identities = 83/99 (83%) Strand = Plus / Plus Query: 244 gagaagggcattggggatggaacagttagctatggaatggatgacgcagatgatatctac 303 ||||| || |||||||||||||| || ||||||||||||||||| | |||||| ||||| Sbjct: 202 gagaaaggtattggggatggaactgtgagctatggaatggatgatggagatgacatctat 261 Query: 304 atgcgctcctggacaggaacaataattggtccccacaac 342 ||||| || ||||| || || || || ||||| |||||| Sbjct: 262 atgcgttcttggactggcaccatcatcggtcctcacaac 300
>gb|DQ160024.1| Taraxacum officinale TO25-123 (To25-123) mRNA, partial cds Length = 203 Score = 69.9 bits (35), Expect = 1e-08 Identities = 116/143 (81%) Strand = Plus / Plus Query: 259 gatggaacagttagctatggaatggatgacgcagatgatatctacatgcgctcctggaca 318 ||||| ||||| || |||||||||||||| | || || || |||||||| || ||||| Sbjct: 26 gatggcacagtgagttatggaatggatgatggcgacgacatttacatgcgttcatggact 85 Query: 319 ggaacaataattggtccccacaacactgtccacgagggccggatttatcagttgaagctt 378 || || || |||||||| |||||| |||| ||||| || || |||||||| ||||||| Sbjct: 86 ggcaccatcattggtcctcacaactctgtacacgaaggtcgcatttatcaactgaagctg 145 Query: 379 ttctgtgacaaggactatccaga 401 || |||||||| || |||||||| Sbjct: 146 ttttgtgacaaagattatccaga 168
>emb|AL353912.1|ATF3C22 Arabidopsis thaliana DNA chromosome 3, BAC clone F3C22 Length = 100028 Score = 69.9 bits (35), Expect = 1e-08 Identities = 83/99 (83%) Strand = Plus / Minus Query: 244 gagaagggcattggggatggaacagttagctatggaatggatgacgcagatgatatctac 303 ||||| || |||||||||||||| || ||||||||||||||||| | |||||| ||||| Sbjct: 15847 gagaaaggtattggggatggaactgtgagctatggaatggatgatggagatgacatctat 15788 Query: 304 atgcgctcctggacaggaacaataattggtccccacaac 342 ||||| || ||||| || || || || ||||| |||||| Sbjct: 15787 atgcgttcttggactggcaccatcatcggtcctcacaac 15749
>emb|AL050300.2|ATF22O6 Arabidopsis thaliana DNA chromosome 3, BAC clone F22O6 Length = 93443 Score = 69.9 bits (35), Expect = 1e-08 Identities = 83/99 (83%) Strand = Plus / Minus Query: 244 gagaagggcattggggatggaacagttagctatggaatggatgacgcagatgatatctac 303 ||||| || |||||||||||||| || ||||||||||||||||| | |||||| ||||| Sbjct: 77564 gagaaaggtattggggatggaactgtgagctatggaatggatgatggagatgacatctat 77505 Query: 304 atgcgctcctggacaggaacaataattggtccccacaac 342 ||||| || ||||| || || || || ||||| |||||| Sbjct: 77504 atgcgttcttggactggcaccatcatcggtcctcacaac 77466
>emb|CT829706.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN011P14, full insert sequence Length = 766 Score = 67.9 bits (34), Expect = 6e-08 Identities = 82/98 (83%) Strand = Plus / Plus Query: 298 atctacatgcgctcctggacaggaacaataattggtccccacaacactgtccacgagggc 357 |||| ||||||||||||||| || ||||| ||||| || | |||| |||| |||||||| Sbjct: 230 atcttcatgcgctcctggaccggcacaatcattggaccactcaactctgtgcacgagggg 289 Query: 358 cggatttatcagttgaagcttttctgtgacaaggacta 395 || || || ||| ||||||| ||||| ||||||||||| Sbjct: 290 cgcatctaccagctgaagctcttctgcgacaaggacta 327
>ref|NM_001060847.1| Oryza sativa (japonica cultivar-group) Os04g0684800 (Os04g0684800) mRNA, partial cds Length = 811 Score = 67.9 bits (34), Expect = 6e-08 Identities = 82/98 (83%) Strand = Plus / Plus Query: 298 atctacatgcgctcctggacaggaacaataattggtccccacaacactgtccacgagggc 357 |||| ||||||||||||||| || ||||| ||||| || | |||| |||| |||||||| Sbjct: 147 atcttcatgcgctcctggaccggcacaatcattggaccactcaactctgtgcacgagggg 206 Query: 358 cggatttatcagttgaagcttttctgtgacaaggacta 395 || || || ||| ||||||| ||||| ||||||||||| Sbjct: 207 cgcatctaccagctgaagctcttctgcgacaaggacta 244
>dbj|AK066799.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013077E20, full insert sequence Length = 813 Score = 67.9 bits (34), Expect = 6e-08 Identities = 82/98 (83%) Strand = Plus / Plus Query: 298 atctacatgcgctcctggacaggaacaataattggtccccacaacactgtccacgagggc 357 |||| ||||||||||||||| || ||||| ||||| || | |||| |||| |||||||| Sbjct: 149 atcttcatgcgctcctggaccggcacaatcattggaccactcaactctgtgcacgagggg 208 Query: 358 cggatttatcagttgaagcttttctgtgacaaggacta 395 || || || ||| ||||||| ||||| ||||||||||| Sbjct: 209 cgcatctaccagctgaagctcttctgcgacaaggacta 246
>ref|NM_105734.2| Arabidopsis thaliana ubiquitin conjugating enzyme/ ubiquitin-like activating enzyme (AT1G70660) mRNA, complete cds Length = 838 Score = 65.9 bits (33), Expect = 2e-07 Identities = 75/89 (84%) Strand = Plus / Plus Query: 211 aactttagactgctggaagagcttgagagaggagagaagggcattggggatggaacagtt 270 ||||||||| | |||||||||| || ||||| ||||| || ||||| ||||| ||||| Sbjct: 197 aactttagattattggaagagctagaaagaggtgagaaaggaattggagatgggacagtg 256 Query: 271 agctatggaatggatgacgcagatgatat 299 || |||||||||||||| || |||||||| Sbjct: 257 agttatggaatggatgatgctgatgatat 285
>gb|AY088344.1| Arabidopsis thaliana clone 5821 mRNA, complete sequence Length = 815 Score = 65.9 bits (33), Expect = 2e-07 Identities = 75/89 (84%) Strand = Plus / Plus Query: 211 aactttagactgctggaagagcttgagagaggagagaagggcattggggatggaacagtt 270 ||||||||| | |||||||||| || ||||| ||||| || ||||| ||||| ||||| Sbjct: 174 aactttagattattggaagagctagaaagaggtgagaaaggaattggagatgggacagtg 233 Query: 271 agctatggaatggatgacgcagatgatat 299 || |||||||||||||| || |||||||| Sbjct: 234 agttatggaatggatgatgctgatgatat 262
>gb|AC011663.7|AC011663 Arabidopsis thaliana chromosome 1 BAC F5A18 genomic sequence, complete sequence Length = 108582 Score = 65.9 bits (33), Expect = 2e-07 Identities = 75/89 (84%) Strand = Plus / Minus Query: 211 aactttagactgctggaagagcttgagagaggagagaagggcattggggatggaacagtt 270 ||||||||| | |||||||||| || ||||| ||||| || ||||| ||||| ||||| Sbjct: 63622 aactttagattattggaagagctagaaagaggtgagaaaggaattggagatgggacagtg 63563 Query: 271 agctatggaatggatgacgcagatgatat 299 || |||||||||||||| || |||||||| Sbjct: 63562 agttatggaatggatgatgctgatgatat 63534
>gb|BT004943.1| Arabidopsis thaliana clone U20398 putative E2, ubiquitin-conjugating enzyme (At1g70660) mRNA, complete cds Length = 511 Score = 65.9 bits (33), Expect = 2e-07 Identities = 75/89 (84%) Strand = Plus / Plus Query: 211 aactttagactgctggaagagcttgagagaggagagaagggcattggggatggaacagtt 270 ||||||||| | |||||||||| || ||||| ||||| || ||||| ||||| ||||| Sbjct: 37 aactttagattattggaagagctagaaagaggtgagaaaggaattggagatgggacagtg 96 Query: 271 agctatggaatggatgacgcagatgatat 299 || |||||||||||||| || |||||||| Sbjct: 97 agttatggaatggatgatgctgatgatat 125
>gb|BT004011.1| Arabidopsis thaliana clone RAFL14-86-C24 (R20398) putative E2, ubiquitin-conjugating enzyme (At1g70660) mRNA, complete cds Length = 827 Score = 65.9 bits (33), Expect = 2e-07 Identities = 75/89 (84%) Strand = Plus / Plus Query: 211 aactttagactgctggaagagcttgagagaggagagaagggcattggggatggaacagtt 270 ||||||||| | |||||||||| || ||||| ||||| || ||||| ||||| ||||| Sbjct: 182 aactttagattattggaagagctagaaagaggtgagaaaggaattggagatgggacagtg 241 Query: 271 agctatggaatggatgacgcagatgatat 299 || |||||||||||||| || |||||||| Sbjct: 242 agttatggaatggatgatgctgatgatat 270
>emb|CT987735.1| partial cDNA sequence from a Lambda ZAP II normalized full-length cDNA library of differentiating xylem from Eucalyptus gunnii Length = 842 Score = 63.9 bits (32), Expect = 9e-07 Identities = 167/212 (78%) Strand = Plus / Plus Query: 232 cttgagagaggagagaagggcattggggatggaacagttagctatggaatggatgacgca 291 |||||| | ||||| || || ||||| ||||| || || ||||| || |||||||| | | Sbjct: 207 cttgagcgtggagaaaaaggaattggagatggcactgtcagctacgggatggatgatgga 266 Query: 292 gatgatatctacatgcgctcctggacaggaacaataattggtccccacaacactgtccac 351 || || || |||||| | || ||||| || ||||| |||||||| ||||| ||||| || Sbjct: 267 gacgacatttacatgagatcttggactggcacaatcattggtcctcacaatactgtacat 326 Query: 352 gagggccggatttatcagttgaagcttttctgtgacaaggactatccagacaggccaccg 411 || || || || || ||||||||||| ||||| ||||| || || || || | |||||| Sbjct: 327 gaaggtcgtatctaccagttgaagctgttctgcgacaaagattacccggaaaagccaccc 386 Query: 412 actgttaggtttcactcaagaatcaacatgac 443 |||||| | ||||| ||| | ||||||||||| Sbjct: 387 actgttcgttttcattcacgcatcaacatgac 418
>gb|DQ267678.1| Tricholoma vaccinum isolate GK6514 ubiquitin-conjugating enzyme variant MMS2-like mRNA, partial sequence Length = 229 Score = 56.0 bits (28), Expect = 2e-04 Identities = 82/100 (82%) Strand = Plus / Minus Query: 196 gttgtcgtgccaaggaactttagactgctggaagagcttgagagaggagagaagggcatt 255 ||||| || ||||| |||||| | |||||| |||||| || ||||||||||| || || Sbjct: 104 gttgttgttccaagaaactttcgtttgctgggagagctagaaagaggagagaaaggattt 45 Query: 256 ggggatggaacagttagctatggaatggatgacgcagatg 295 || ||||| || || |||||||||||||| |||| ||||| Sbjct: 44 ggtgatgggactgtcagctatggaatggaagacggagatg 5
>gb|AC189492.1| Brassica rapa subsp. pekinensis clone KBrB084M08, complete sequence Length = 129722 Score = 54.0 bits (27), Expect = 9e-04 Identities = 69/83 (83%) Strand = Plus / Plus Query: 205 ccaaggaactttagactgctggaagagcttgagagaggagagaagggcattggggatgga 264 ||||| ||||||||| || | ||||||||||| ||||| ||||| || || || || || Sbjct: 50204 ccaagaaactttagattgttagaagagcttgaaagaggtgagaaaggtatcggagacggt 50263 Query: 265 acagttagctatggaatggatga 287 || || ||||||||||||||||| Sbjct: 50264 accgtcagctatggaatggatga 50286
>emb|CT986910.1| partial cDNA sequence from a Lambda ZAP II normalized full-length cDNA library of differentiating xylem from Eucalyptus gunnii Length = 488 Score = 46.1 bits (23), Expect = 0.21 Identities = 101/127 (79%) Strand = Plus / Plus Query: 313 tggacaggaacaataattggtccccacaacactgtccacgagggccggatttatcagttg 372 ||||| || ||||| |||||||| ||||| ||||| || || || || || || |||||| Sbjct: 16 tggactggcacaatcattggtcctcacaatactgtacatgaaggtcgtatctaccagttg 75 Query: 373 aagcttttctgtgacaaggactatccagacaggccaccgactgttaggtttcactcaaga 432 ||||| ||||| ||||| || || || || | |||||| |||||| | ||||| ||| | Sbjct: 76 aagctgttctgcgacaaagattacccggaaaagccacccactgttcgttttcattcacgc 135 Query: 433 atcaaca 439 ||||||| Sbjct: 136 atcaaca 142
>gb|AY191225.1| Aplysia californica nervous system adducin (ADD) mRNA, complete cds Length = 4000 Score = 46.1 bits (23), Expect = 0.21 Identities = 26/27 (96%) Strand = Plus / Minus Query: 234 tgagagaggagagaagggcattgggga 260 |||||||||||||||||||| |||||| Sbjct: 2337 tgagagaggagagaagggcagtgggga 2311
>gb|AC184073.2| Populus trichocarpa clone Pop1-50D1, complete sequence Length = 139458 Score = 44.1 bits (22), Expect = 0.84 Identities = 25/26 (96%) Strand = Plus / Plus Query: 233 ttgagagaggagagaagggcattggg 258 ||||||||||||||||||| |||||| Sbjct: 47348 ttgagagaggagagaaggggattggg 47373
>gb|CP000123.1| Mycoplasma capricolum subsp. capricolum ATCC 27343, complete genome Length = 1010023 Score = 44.1 bits (22), Expect = 0.84 Identities = 22/22 (100%) Strand = Plus / Plus Query: 820 gcttgagctgttgtttttaaaa 841 |||||||||||||||||||||| Sbjct: 28148 gcttgagctgttgtttttaaaa 28169
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 44.1 bits (22), Expect = 0.84 Identities = 28/30 (93%) Strand = Plus / Plus Query: 90 cggagcacgcgcgccgccccgaattcgcct 119 ||||||| ||||||||| |||||||||||| Sbjct: 2276707 cggagcatgcgcgccgcgccgaattcgcct 2276736
>emb|CU104675.1| Gorilla DNA sequence from clone CH255-83O18, complete sequence Length = 144602 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 236 agagaggagagaagggcattg 256 ||||||||||||||||||||| Sbjct: 25418 agagaggagagaagggcattg 25438
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 126 tccgccggacggtctcctccc 146 ||||||||||||||||||||| Sbjct: 1014593 tccgccggacggtctcctccc 1014573
>gb|AC121147.8| Mus musculus chromosome 3, clone RP24-369O15, complete sequence Length = 178352 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 315 gacaggaacaataattggtcc 335 ||||||||||||||||||||| Sbjct: 113257 gacaggaacaataattggtcc 113237
>gb|AC116776.12| Mus musculus chromosome 3, clone RP24-472H5, complete sequence Length = 170076 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 315 gacaggaacaataattggtcc 335 ||||||||||||||||||||| Sbjct: 146069 gacaggaacaataattggtcc 146089
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 42.1 bits (21), Expect = 3.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 54 gagcgccgccgagcacgcgcgcacg 78 |||||| |||||||||||||||||| Sbjct: 852129 gagcgcggccgagcacgcgcgcacg 852153
>emb|AL845439.5| Human DNA sequence from clone DAQB-215D11 on chromosome 6 Contains 3' end of C6orf12 for chromosome 6 open reading frame 12, ETF1P1 for eukaryotic translation termination factor 1 pseudogene 1, ZNRD1 for zinc ribbon domain containing, 1, PPP1R11 for protein phosphatase 1, regulatory (inhibitor) subunit 11, RNF39 for ring finger protein 39 and 3 CpG islands, complete sequence Length = 74764 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 236 agagaggagagaagggcattg 256 ||||||||||||||||||||| Sbjct: 63889 agagaggagagaagggcattg 63909
>emb|AL137144.14| Human DNA sequence from clone RP11-210E23 on chromosome 13q31.1-32.3 Contains the 3' end of the GPC6 gene for glypican 6, complete sequence Length = 100072 Score = 42.1 bits (21), Expect = 3.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 236 agagaggagagaagggcattgggga 260 |||||||| |||||||||||||||| Sbjct: 70463 agagaggaaagaagggcattgggga 70487
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 60 cgccgagcacgcgcgcacgcc 80 ||||||||||||||||||||| Sbjct: 3061024 cgccgagcacgcgcgcacgcc 3061004
>dbj|BA000041.2| Pan troglodytes DNA, major histocompatibility complex class I region Length = 1750601 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 236 agagaggagagaagggcattg 256 ||||||||||||||||||||| Sbjct: 1395227 agagaggagagaagggcattg 1395207 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 129,841,165 Number of extensions: 6758838 Number of successful extensions: 129272 Number of sequences better than 10.0: 78 Number of HSP's gapped: 129266 Number of HSP's successfully gapped: 93 Length of query: 877 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 855 Effective length of database: 18,508,616,841 Effective search space: 15824867399055 Effective search space used: 15824867399055 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)