ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf89n22
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1P31843:RRPO_OENBE RNA-directed DNA polymerase homolog - Oenother... 52 3e-13
2P04323:POL3_DROME Retrovirus-related Pol polyprotein from transp... 57 2e-10
3Q05654:RT21_SCHPO Retrotransposable element Tf2 155 kDa protein ... 63 7e-09
4Q7LHG5:YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein - Saccha... 62 1e-08
5Q99315:YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein - Saccha... 62 1e-08
6Q9UR07:RT23_SCHPO Retrotransposable element Tf2 155 kDa protein ... 62 2e-08
7Q9C0R2:RT22_SCHPO Retrotransposable element Tf2 155 kDa protein ... 62 2e-08
8P34431:YL52_CAEEL Uncharacterized protein F44E2.2 - Caenorhabdit... 41 2e-07
9P20825:POL2_DROME Retrovirus-related Pol polyprotein from transp... 56 6e-07
10Q8I7P9:POL5_DROME Retrovirus-related Pol polyprotein from transp... 50 5e-05
11P10401:POLY_DROME Retrovirus-related Pol polyprotein from transp... 47 3e-04
12P10394:POL4_DROME Retrovirus-related Pol polyprotein from transp... 34 5e-04
13P19199:POL_COYMV Putative polyprotein [Contains: Coat protein; P... 44 0.003
14P27502:POL_RTBVP Polyprotein - Rice tungro bacilliform virus (is... 42 0.016
15P03556:POL_CAMVD Enzymatic polyprotein [Contains: Aspartic prote... 41 0.021
16P03554:POL_CAMVS Enzymatic polyprotein [Contains: Aspartic prote... 41 0.028
17Q00962:POL_CAMVN Enzymatic polyprotein [Contains: Aspartic prote... 41 0.028
18Q02964:POL_CAMVE Enzymatic polyprotein [Contains: Aspartic prote... 41 0.028
19P03555:POL_CAMVC Enzymatic polyprotein [Contains: Aspartic prote... 41 0.028
20P15629:POL_SOCMV Enzymatic polyprotein [Contains: Aspartic prote... 39 0.081
21O67738:Y1900_AQUAE Uncharacterized protein aq_1900 - Aquifex aeo... 39 0.082
22P05962:POL_HV2NZ Gag-Pol polyprotein - Human immunodeficiency vi... 32 0.11
23P27972:GAG_SIVV1 Gag polyprotein [Contains: Core protein p17; Co... 39 0.11
24P05891:GAG_HV2NZ Gag polyprotein - Human immunodeficiency virus ... 32 0.11
25P09523:POL_FMVD Enzymatic polyprotein [Contains: Aspartic protea... 39 0.14
26Q04832:HEXP_LEIMA DNA-binding protein HEXBP - Leishmania major 38 0.18
27P10258:GAG_MMTVB Gag polyprotein [Contains: Protein p10; Phospho... 38 0.24
28Q09575:YRD6_CAEEL Uncharacterized protein K02A2.6 - Caenorhabdit... 37 0.31
29P11284:GAG_MMTVC Gag polyprotein [Contains: Protein p10; Phospho... 37 0.40
30P11368:POL_IPMA Putative Pol polyprotein [Contains: Integrase - ... 35 2.0
31P16818:UL61_HCMVA Uncharacterized protein UL61 - Human cytomegal... 35 2.0
32P63128:POK4_HUMAN HERV-K_6q14.1 provirus ancestral Gag-Pol polyp... 35 2.0
33P62685:GAK6_HUMAN HERV-K_8p23.1 provirus ancestral Gag polyprote... 35 2.0
34P62684:GAK5_HUMAN HERV-K_19p13.11 provirus ancestral Gag polypro... 35 2.0
35P63126:GAK4_HUMAN HERV-K_6q14.1 provirus ancestral Gag polyprote... 35 2.0
36Q9YNA8:GAK3_HUMAN HERV-K_19q12 provirus ancestral Gag polyprotei... 35 2.0
37Q7LDI9:GAK2_HUMAN HERV-K_7p22.1 provirus ancestral Gag polyprote... 35 2.0
38P62683:GAK1_HUMAN HERV-K_12q14.1 provirus ancestral Gag polyprot... 35 2.0
39P63130:GAK12_HUMAN HERV-K_1q22 provirus ancestral Gag polyprotei... 35 2.0
40P63145:GAK11_HUMAN HERV-K_22q11.21 provirus ancestral Gag polypr... 35 2.0
41P87889:GAK10_HUMAN HERV-K_5q33.3 provirus ancestral Gag polyprot... 35 2.0
42Q5SP50:ZCRB1_DANRE Zinc finger CCHC-type and RNA-binding motif-c... 34 2.6
43Q76634:POL_HV2UC Gag-Pol polyprotein - Human immunodeficiency vi... 34 2.6
44P43596:IOC3_YEAST ISWI one complex protein 3 - Saccharomyces cer... 34 2.6
45Q76633:GAG_HV2UC Gag polyprotein - Human immunodeficiency virus ... 34 2.6
46Q89928:POL_HV2EH Gag-Pol polyprotein - Human immunodeficiency vi... 34 3.4
47Q79666:POL_HV1MV Gag-Pol polyprotein - Human immunodeficiency vi... 34 3.4
48Q74230:GAG_HV2EH Gag polyprotein - Human immunodeficiency virus ... 34 3.4
49Q79665:GAG_HV1MV Gag polyprotein - Human immunodeficiency virus ... 34 3.4
50Q5FVR7:CPSF4_RAT Cleavage and polyadenylation specificity factor... 34 3.4
51Q8BQZ5:CPSF4_MOUSE Cleavage and polyadenylation specificity fact... 34 3.4
52P05400:POL_CERV Enzymatic polyprotein [Contains: Aspartic protea... 33 4.5
53P19560:POL_BIV29 Gag-Pol polyprotein - Bovine immunodeficiency v... 33 4.5
54Q63TP8:IF2_BURPS Translation initiation factor IF-2 - Burkholder... 33 4.5
55Q3JSY9:IF2_BURP1 Translation initiation factor IF-2 - Burkholder... 33 4.5
56Q62KK9:IF2_BURMA Translation initiation factor IF-2 - Burkholder... 33 4.5
57Q07653:HBT1_YEAST Protein HBT1 - Saccharomyces cerevisiae (Baker... 33 4.5
58P20759:GC1_RAT Ig gamma-1 chain C region - Rattus norvegicus (Rat) 33 4.5
59P19558:GAG_BIV29 Gag polyprotein - Bovine immunodeficiency virus... 33 4.5
60Q8C7Q4:RBM4_MOUSE RNA-binding protein 4 - Mus musculus (Mouse) 33 5.8
61Q4R979:RBM4_MACFA RNA-binding protein 4 - Macaca fascicularis (C... 33 5.8
62Q9BWF3:RBM4_HUMAN RNA-binding protein 4 - Homo sapiens (Human) 33 5.8
63P15833:POL_HV2D2 Gag-Pol polyprotein - Human immunodeficiency vi... 33 5.8
64P15832:GAG_HV2D2 Gag polyprotein - Human immunodeficiency virus ... 33 5.8
65P33458:GAG_CAEVC Gag polyprotein [Contains: Core protein p16; Co... 33 5.8
66P03344:GAG_BLVJ Gag polyprotein [Contains: Core protein p15 - Bo... 33 5.8
67P25058:GAG_BLVAU Gag polyprotein [Contains: Core protein p15 - B... 33 5.8
68Q148A4:CK066_MOUSE Uncharacterized protein C11orf66 homolog - Mu... 33 5.8
69O77086:C3G_DROME Guanine nucleotide-releasing factor 2 - Drosoph... 33 7.6
70Q9BDY9:RBM4_RABIT RNA-binding protein 4 - Oryctolagus cuniculus ... 33 7.6
71Q3MHX3:RBM4_BOVIN RNA-binding protein 4 - Bos taurus (Bovine) 33 7.6
72Q64LC9:RBM4B_RAT RNA-binding protein 4B - Rattus norvegicus (Rat) 33 7.6
73Q06AT9:RBM4B_PIG RNA-binding protein 4B - Sus scrofa (Pig) 33 7.6
74Q8VE92:RBM4B_MOUSE RNA-binding protein 4B - Mus musculus (Mouse) 33 7.6
75Q9BQ04:RBM4B_HUMAN RNA-binding protein 4B - Homo sapiens (Human) 33 7.6
76P17757:POL_HV2D1 Gag-Pol polyprotein - Human immunodeficiency vi... 33 7.6
77Q9QBY3:POL_HV196 Gag-Pol polyprotein - Human immunodeficiency vi... 33 7.6
78P17756:GAG_HV2D1 Gag polyprotein - Human immunodeficiency virus ... 33 7.6
79Q9QBY4:GAG_HV196 Gag polyprotein - Human immunodeficiency virus ... 33 7.6
80Q499V6:ZCRB1_RAT Zinc finger CCHC-type and RNA-binding motif-con... 32 10.0
81Q9CZ96:ZCRB1_MOUSE Zinc finger CCHC-type and RNA-binding motif-c... 32 10.0
82Q8TBF4:ZCRB1_HUMAN Zinc finger CCHC-type and RNA-binding motif-c... 32 10.0
83Q56JZ7:ZCRB1_BOVIN Zinc finger CCHC-type and RNA-binding motif-c... 32 10.0
84Q9N2R3:TPM_CHAFE Tropomyosin - Charybdis feriatus (Crab) 32 10.0
85Q6IQ97:RBM4_DANRE RNA-binding protein 4 - Danio rerio (Zebrafish... 32 10.0
86P12451:POL_HV2SB Gag-Pol polyprotein - Human immunodeficiency vi... 32 10.0
87Q74120:POL_HV2KR Gag-Pol polyprotein - Human immunodeficiency vi... 32 10.0
88P18096:POL_HV2BE Gag-Pol polyprotein - Human immunodeficiency vi... 32 10.0
89P12499:POL_HV1Z2 Gag-Pol polyprotein - Human immunodeficiency vi... 32 10.0
90P27978:GAG_SIVVG Gag polyprotein [Contains: Core protein p17; Co... 32 10.0
91P12450:GAG_HV2SB Gag polyprotein - Human immunodeficiency virus ... 32 10.0
92Q74119:GAG_HV2KR Gag polyprotein - Human immunodeficiency virus ... 32 10.0
93P18095:GAG_HV2BE Gag polyprotein - Human immunodeficiency virus ... 32 10.0
94P12495:GAG_HV1Z2 Gag polyprotein - Human immunodeficiency virus ... 32 10.0
95O19137:CPSF4_BOVIN Cleavage and polyadenylation specificity fact... 32 10.0 
>P31843:RRPO_OENBE RNA-directed DNA polymerase homolog - Oenothera bertiana (Bertero's|
            evening primrose)
          Length = 142
 Score = 52.4 bits (124), Expect(2) = 3e-13
 Identities = 27/58 (46%), Positives = 39/58 (67%)
 Frame = +3

Query: 2355 KIVHKARFHQIRIRPRDEWKTALKRKEGLFEWVVMPFGLSNAPSTFMHLMNQVLRQFL 2528
            K+  ++ + Q+RI   DE KT    + G FE+ VMPFGL+NA +TF +LMN VL ++L
Sbjct: 44   KLDLRSGYWQVRIAKGDEPKTTCVTRYGSFEFRVMPFGLTNALATFCNLMNNVLYEYL 101



 Score = 45.1 bits (105), Expect(2) = 3e-13
 Identities = 18/39 (46%), Positives = 28/39 (71%)
 Frame = +1

Query: 2260 MCTDIKVVKKITVRYRFPIPRLDGMLD*LSAARLFTKLD 2376
            MC D + + K+T++ ++PIPR+D + D L+ A  FTKLD
Sbjct: 8    MCIDYRALTKVTIKNKYPIPRVDDLFDRLAQATWFTKLD 46
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>P04323:POL3_DROME Retrovirus-related Pol polyprotein from transposon 17.6 [Includes:|
            Protease - Drosophila melanogaster (Fruit fly)
          Length = 1058

 Score = 57.4 bits (137), Expect(2) = 2e-10
 Identities = 26/53 (49%), Positives = 34/53 (64%)
 Frame = +3

Query: 2376 FHQIRIRPRDEWKTALKRKEGLFEWVVMPFGLSNAPSTFMHLMNQVLRQFLSQ 2534
            FHQI + P    KTA   K G +E++ MPFGL NAP+TF   MN +LR  L++
Sbjct: 307  FHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKNAPATFQRCMNDILRPLLNK 359



 Score = 30.4 bits (67), Expect(2) = 2e-10
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 2269 DIKVVKKITVRYRFPIPRLDGMLD*LSAARLFTKLDFIK 2385
            D + + +ITV  R PIP +D +L  L     FT +D  K
Sbjct: 267  DYRKLNEITVGDRHPIPNMDEILGKLGRCNYFTTIDLAK 305
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>Q05654:RT21_SCHPO Retrotransposable element Tf2 155 kDa protein type 1 -|
            Schizosaccharomyces pombe (Fission yeast)
          Length = 1333

 Score = 62.8 bits (151), Expect = 7e-09
 Identities = 46/173 (26%), Positives = 78/173 (45%), Gaps = 20/173 (11%)
 Frame = +3

Query: 2058 PIKGIQYSIDLIPGASLPNLPHSRMSPKEHDILKQRVEELLQKGHIRES--ISPCPVPPA 2231
            PIKG+++ ++L        + +  + P +   +   + + L+ G IRES  I+ CPV   
Sbjct: 396  PIKGLEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFV 455

Query: 2232 HAKERWILTHVYGH*SR*EDHRKV*IPYSPPGWYV------------------GLA*CGK 2357
              KE  +               ++ + Y P   YV                  G     K
Sbjct: 456  PKKEGTL---------------RMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTK 500

Query: 2358 IVHKARFHQIRIRPRDEWKTALKRKEGLFEWVVMPFGLSNAPSTFMHLMNQVL 2516
            +  K+ +H IR+R  DE K A +   G+FE++VMP+G+S AP+ F + +N +L
Sbjct: 501  LDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTIL 553
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>Q7LHG5:YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein - Saccharomyces cerevisiae|
            (Baker's yeast)
          Length = 1498

 Score = 62.0 bits (149), Expect = 1e-08
 Identities = 49/160 (30%), Positives = 74/160 (46%), Gaps = 10/160 (6%)
 Frame = +3

Query: 2070 IQYSIDLIPGASLPNLPHSRMSPKEHDILKQRVEELLQKGHIRESISPCPVPPAHAKER- 2246
            +++ I++ PGA LP L    ++ K    + + V++LL    I  S SPC  P     ++ 
Sbjct: 610  VKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKD 669

Query: 2247 --WILTHVYGH*SR*EDHRKV*IPYSPPGWYVGLA*CGKI-------VHKARFHQIRIRP 2399
              + L   Y    R  +   +  P+  P     L+  G         +H   +HQI + P
Sbjct: 670  GTFRLCVDY----RTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSG-YHQIPMEP 724

Query: 2400 RDEWKTALKRKEGLFEWVVMPFGLSNAPSTFMHLMNQVLR 2519
            +D +KTA     G +E+ VMPFGL NAPSTF   M    R
Sbjct: 725  KDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFR 764
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>Q99315:YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein - Saccharomyces cerevisiae|
            (Baker's yeast)
          Length = 1547

 Score = 62.0 bits (149), Expect = 1e-08
 Identities = 49/160 (30%), Positives = 74/160 (46%), Gaps = 10/160 (6%)
 Frame = +3

Query: 2070 IQYSIDLIPGASLPNLPHSRMSPKEHDILKQRVEELLQKGHIRESISPCPVPPAHAKER- 2246
            +++ I++ PGA LP L    ++ K    + + V++LL    I  S SPC  P     ++ 
Sbjct: 584  VKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKD 643

Query: 2247 --WILTHVYGH*SR*EDHRKV*IPYSPPGWYVGLA*CGKI-------VHKARFHQIRIRP 2399
              + L   Y    R  +   +  P+  P     L+  G         +H   +HQI + P
Sbjct: 644  GTFRLCVDY----RTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSG-YHQIPMEP 698

Query: 2400 RDEWKTALKRKEGLFEWVVMPFGLSNAPSTFMHLMNQVLR 2519
            +D +KTA     G +E+ VMPFGL NAPSTF   M    R
Sbjct: 699  KDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFR 738
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>Q9UR07:RT23_SCHPO Retrotransposable element Tf2 155 kDa protein type 3 -|
            Schizosaccharomyces pombe (Fission yeast)
          Length = 1333

 Score = 61.6 bits (148), Expect = 2e-08
 Identities = 46/173 (26%), Positives = 78/173 (45%), Gaps = 20/173 (11%)
 Frame = +3

Query: 2058 PIKGIQYSIDLIPGASLPNLPHSRMSPKEHDILKQRVEELLQKGHIRES--ISPCPVPPA 2231
            PIKG+++ ++L        + +  + P +   +   + + L+ G IRES  I+ CPV   
Sbjct: 396  PIKGLEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFV 455

Query: 2232 HAKERWILTHVYGH*SR*EDHRKV*IPYSPPGWYV------------------GLA*CGK 2357
              KE  +               ++ + Y P   YV                  G     K
Sbjct: 456  PKKEGTL---------------RMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTK 500

Query: 2358 IVHKARFHQIRIRPRDEWKTALKRKEGLFEWVVMPFGLSNAPSTFMHLMNQVL 2516
            +  K+ +H IR+R  DE K A +   G+FE++VMP+G+S AP+ F + +N +L
Sbjct: 501  LDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISIAPAHFQYFINTIL 553
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>Q9C0R2:RT22_SCHPO Retrotransposable element Tf2 155 kDa protein type 2 -|
            Schizosaccharomyces pombe (Fission yeast)
          Length = 1333

 Score = 61.6 bits (148), Expect = 2e-08
 Identities = 46/173 (26%), Positives = 78/173 (45%), Gaps = 20/173 (11%)
 Frame = +3

Query: 2058 PIKGIQYSIDLIPGASLPNLPHSRMSPKEHDILKQRVEELLQKGHIRES--ISPCPVPPA 2231
            PIKG+++ ++L        + +  + P +   +   + + L+ G IRES  I+ CPV   
Sbjct: 396  PIKGLEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFV 455

Query: 2232 HAKERWILTHVYGH*SR*EDHRKV*IPYSPPGWYV------------------GLA*CGK 2357
              KE  +               ++ + Y P   YV                  G     K
Sbjct: 456  PKKEGTL---------------RMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTK 500

Query: 2358 IVHKARFHQIRIRPRDEWKTALKRKEGLFEWVVMPFGLSNAPSTFMHLMNQVL 2516
            +  K+ +H IR+R  DE K A +   G+FE++VMP+G+S AP+ F + +N +L
Sbjct: 501  LDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISIAPAHFQYFINTIL 553
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>P34431:YL52_CAEEL Uncharacterized protein F44E2.2 - Caenorhabditis elegans|
          Length = 2186

 Score = 41.2 bits (95), Expect(2) = 2e-07
 Identities = 19/52 (36%), Positives = 28/52 (53%)
 Frame = +1

Query: 2227 LLTPKKDGS*HMCTDIKVVKKITVRYRFPIPRLDGMLD*LSAARLFTKLDFI 2382
            +L  KKDGS  MC D + V K+      P+P ++  L  L+  +L+T  D I
Sbjct: 983  VLVKKKDGSIRMCIDYRKVNKVVKNNAHPLPNIEATLQSLAGKKLYTVFDMI 1034



 Score = 36.2 bits (82), Expect(2) = 2e-07
 Identities = 19/53 (35%), Positives = 28/53 (52%)
 Frame = +3

Query: 2370 ARFHQIRIRPRDEWKTALKRKEGLFEWVVMPFGLSNAPSTFMHLMNQVLRQFL 2528
            A F QI +  + +  TA      LFEW V+PFGL  +P+ F   M +++   L
Sbjct: 1035 AGFWQIPLDEKSKEITAFAIGSELFEWNVLPFGLVISPALFQGTMEEIIGDLL 1087
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>P20825:POL2_DROME Retrovirus-related Pol polyprotein from transposon 297 [Includes:|
            Protease - Drosophila melanogaster (Fruit fly)
          Length = 1059

 Score = 56.2 bits (134), Expect = 6e-07
 Identities = 56/185 (30%), Positives = 79/185 (42%), Gaps = 17/185 (9%)
 Frame = +3

Query: 2031 HTWGATRLSPIKGIQYSIDLIPGASLPNLPHSRMSPKEHDI-LKQRVEELLQKGHIRESI 2207
            H    T  SPI   QY +                  + H+I ++ +V+E+L +G IRES 
Sbjct: 197  HVLNTTHNSPIYSKQYPL-----------------AQTHEIEVENQVQEMLNQGLIRESN 239

Query: 2208 SPCPVPPAHAKERWILTHVYGH*SR*E-----DHRK---V*IP--YSPPGWYVGLA*CGK 2357
            SP   P       W++          +     D+RK   + IP  Y  P     L   GK
Sbjct: 240  SPYNSPT------WVVPKKPDASGANKYRVVIDYRKLNEITIPDRYPIPNMDEILGKLGK 293

Query: 2358 IVHKAR------FHQIRIRPRDEWKTALKRKEGLFEWVVMPFGLSNAPSTFMHLMNQVLR 2519
              +         FHQI +      KTA   K G +E++ MPFGL NAP+TF   MN +LR
Sbjct: 294  CQYFTTIDLAKGFHQIEMDEESISKTAFSTKSGHYEYLRMPFGLRNAPATFQRCMNNILR 353

Query: 2520 QFLSQ 2534
              L++
Sbjct: 354  PLLNK 358
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>Q8I7P9:POL5_DROME Retrovirus-related Pol polyprotein from transposon opus [Includes:|
            Protease - Drosophila melanogaster (Fruit fly)
          Length = 1003

 Score = 50.1 bits (118), Expect = 5e-05
 Identities = 41/145 (28%), Positives = 67/145 (46%), Gaps = 18/145 (12%)
 Frame = +3

Query: 2154 LKQRVEELLQKGHIRESISPC----------PVPPAHAKERWILTHVYGH*SR*EDHRKV 2303
            ++++++ELLQ G IR S SP           P P    + R ++          +    V
Sbjct: 139  VERQIDELLQDGIIRPSNSPYNSPIWIVPKKPKPNGEKQYRMVVDF--------KRLNTV 190

Query: 2304 *IP--YSPPGWYVGLA*CGKIVH------KARFHQIRIRPRDEWKTALKRKEGLFEWVVM 2459
             IP  Y  P     LA  G   +       + FHQI ++  D  KTA     G +E++ +
Sbjct: 191  TIPDTYPIPDINATLASLGNAKYFTTLDLTSGFHQIHMKESDIPKTAFSTLNGKYEFLRL 250

Query: 2460 PFGLSNAPSTFMHLMNQVLRQFLSQ 2534
            PFGL NAP+ F  +++ +LR+ + +
Sbjct: 251  PFGLKNAPAIFQRMIDDILREHIGK 275
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>P10401:POLY_DROME Retrovirus-related Pol polyprotein from transposon gypsy [Includes:|
            Reverse transcriptase - Drosophila melanogaster (Fruit
            fly)
          Length = 1035

 Score = 47.4 bits (111), Expect = 3e-04
 Identities = 45/142 (31%), Positives = 67/142 (47%), Gaps = 17/142 (11%)
 Frame = +3

Query: 2148 DILKQRVEELLQKGHIRESISPCPVPPAHAKERWIL----THVYGH*SR*E--DHRKV*- 2306
            D +   V++LL+ G IR S SP   P       W++    T  +G+ ++    D RK+  
Sbjct: 195  DFVNNEVKQLLKDGIIRPSRSPYNSPT------WVVDKKGTDAFGNPNKRLVIDFRKLNE 248

Query: 2307 --IP--YSPPGWYVGLA*CGKIVH------KARFHQIRIRPRDEWKTALKRKEGLFEWVV 2456
              IP  Y  P   + LA  GK         K+ +HQI +   D  KT+     G +E+  
Sbjct: 249  KTIPDRYPMPSIPMILANLGKAKFFTTLDLKSGYHQIYLAEHDREKTSFSVNGGKYEFCR 308

Query: 2457 MPFGLSNAPSTFMHLMNQVLRQ 2522
            +PFGL NA S F   ++ VLR+
Sbjct: 309  LPFGLRNASSIFQRALDDVLRE 330
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>P10394:POL4_DROME Retrovirus-related Pol polyprotein from transposon 412 [Includes:|
            Protease - Drosophila melanogaster (Fruit fly)
          Length = 1237

 Score = 33.9 bits (76), Expect(2) = 5e-04
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
 Frame = +1

Query: 2227 LLTPKKDG------S*HMCTDIKVVKKITVRYRFPIPRLDGMLD*LSAARLFTKLDFI 2382
            LL PKK           +  D + + K  +  +FP+PR+D +LD L  A+ F+ LD +
Sbjct: 355  LLVPKKSSPNSDKKKWRLVIDYRQINKKLLADKFPLPRIDDILDQLGRAKYFSCLDLM 412



 Score = 32.0 bits (71), Expect(2) = 5e-04
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +3

Query: 2376 FHQIRIRPRDEWKTALKRKEGLFEWVVMPFGLSNAPSTFMHLM 2504
            FHQI +       T+     G + +  +PFGL  AP++F  +M
Sbjct: 415  FHQIELDEGSRDITSFSTSNGSYRFTRLPFGLKIAPNSFQRMM 457
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>P19199:POL_COYMV Putative polyprotein [Contains: Coat protein; Protease - Commelina|
            yellow mottle virus (CoYMV)
          Length = 1886

 Score = 44.3 bits (103), Expect = 0.003
 Identities = 41/164 (25%), Positives = 64/164 (39%), Gaps = 22/164 (13%)
 Frame = +3

Query: 2094 PGASLPNLPHSRMSPKEHDILKQRVEELLQKGHIRES----------------ISPCPVP 2225
            P   +   P   ++P + + + +++  LLQ   IR S                I P    
Sbjct: 1398 PDIKIMGRPIKHVTPGDEEAMTRQINLLLQMKVIRPSESKHRSTAFIVRSGTEIDPITGK 1457

Query: 2226 PAHAKERWILTHVYGH*SR*EDHRKV*IPYSPPGWYVGLA*CG------KIVHKARFHQI 2387
                KER +  +   + +   D       YS PG    ++  G      K   K+ F Q+
Sbjct: 1458 EKKGKERMVFNYKLLNENTESDQ------YSLPGINTIISKVGRSKIYSKFDLKSGFWQV 1511

Query: 2388 RIRPRDEWKTALKRKEGLFEWVVMPFGLSNAPSTFMHLMNQVLR 2519
             +       TA      L+EW+VMPFGL NAP+ F   M+ V +
Sbjct: 1512 AMEEESVPWTAFLAGNKLYEWLVMPFGLKNAPAIFQRKMDNVFK 1555
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>P27502:POL_RTBVP Polyprotein - Rice tungro bacilliform virus (isolate Philippines)|
            (RTBV)
          Length = 1675

 Score = 41.6 bits (96), Expect = 0.016
 Identities = 18/48 (37%), Positives = 27/48 (56%)
 Frame = +3

Query: 2367 KARFHQIRIRPRDEWKTALKRKEGLFEWVVMPFGLSNAPSTFMHLMNQ 2510
            KA FH ++++   +  T     EGL+ W V PFG++NAP  F   M +
Sbjct: 1281 KAGFHHMKLKDDFKDWTTFTCSEGLYTWNVCPFGIANAPCAFQRFMQE 1328
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>P03556:POL_CAMVD Enzymatic polyprotein [Contains: Aspartic protease - Cauliflower|
            mosaic virus (strain D/H) (CaMV)
          Length = 674

 Score = 41.2 bits (95), Expect = 0.021
 Identities = 46/176 (26%), Positives = 73/176 (41%), Gaps = 18/176 (10%)
 Frame = +3

Query: 2052 LSPIKGIQY---SIDLIPGASLPNLPHSRMSPKEHDILKQRVEELLQKGHIRESISPCPV 2222
            L P K  Q+   SI L   +    +   + SP + +   ++++ELL    I+ S SP   
Sbjct: 220  LDPNKTKQWMKASIKLSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMA 279

Query: 2223 PP---------AHAKERWILTHVYGH*SR*EDHRKV*IPYSPPGWYVGLA*C-GKIVH-- 2366
            P             K+R ++ +      +  +   V   Y+PP     L    GK +   
Sbjct: 280  PAFLVNNEAEKRRGKKRMVVNY------KAMNKATVGDAYNPPNKDELLTLIRGKKIFSS 333

Query: 2367 ---KARFHQIRIRPRDEWKTALKRKEGLFEWVVMPFGLSNAPSTFMHLMNQVLRQF 2525
               K+ F Q+ +       TA    +G +EW V+PFGL  APS F   M++  R F
Sbjct: 334  FDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVF 389
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>P03554:POL_CAMVS Enzymatic polyprotein [Contains: Aspartic protease - Cauliflower|
            mosaic virus (strain Strasbourg) (CaMV)
          Length = 679

 Score = 40.8 bits (94), Expect = 0.028
 Identities = 20/53 (37%), Positives = 28/53 (52%)
 Frame = +3

Query: 2367 KARFHQIRIRPRDEWKTALKRKEGLFEWVVMPFGLSNAPSTFMHLMNQVLRQF 2525
            K+ F Q+ +       TA    +G +EW V+PFGL  APS F   M++  R F
Sbjct: 342  KSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVF 394
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>Q00962:POL_CAMVN Enzymatic polyprotein [Contains: Aspartic protease - Cauliflower|
            mosaic virus (strain NY8153) (CaMV)
          Length = 680

 Score = 40.8 bits (94), Expect = 0.028
 Identities = 20/53 (37%), Positives = 28/53 (52%)
 Frame = +3

Query: 2367 KARFHQIRIRPRDEWKTALKRKEGLFEWVVMPFGLSNAPSTFMHLMNQVLRQF 2525
            K+ F Q+ +       TA    +G +EW V+PFGL  APS F   M++  R F
Sbjct: 343  KSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVF 395
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>Q02964:POL_CAMVE Enzymatic polyprotein [Contains: Aspartic protease - Cauliflower|
            mosaic virus (strain BBC) (CaMV)
          Length = 679

 Score = 40.8 bits (94), Expect = 0.028
 Identities = 20/53 (37%), Positives = 28/53 (52%)
 Frame = +3

Query: 2367 KARFHQIRIRPRDEWKTALKRKEGLFEWVVMPFGLSNAPSTFMHLMNQVLRQF 2525
            K+ F Q+ +       TA    +G +EW V+PFGL  APS F   M++  R F
Sbjct: 342  KSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVF 394
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>P03555:POL_CAMVC Enzymatic polyprotein [Contains: Aspartic protease - Cauliflower|
            mosaic virus (strain CM-1841) (CaMV)
          Length = 679

 Score = 40.8 bits (94), Expect = 0.028
 Identities = 20/53 (37%), Positives = 28/53 (52%)
 Frame = +3

Query: 2367 KARFHQIRIRPRDEWKTALKRKEGLFEWVVMPFGLSNAPSTFMHLMNQVLRQF 2525
            K+ F Q+ +       TA    +G +EW V+PFGL  APS F   M++  R F
Sbjct: 342  KSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVF 394
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>P15629:POL_SOCMV Enzymatic polyprotein [Contains: Aspartic protease - Soybean|
            chlorotic mottle virus
          Length = 692

 Score = 39.3 bits (90), Expect = 0.081
 Identities = 35/131 (26%), Positives = 58/131 (44%), Gaps = 10/131 (7%)
 Frame = +3

Query: 2157 KQRVEELLQKGHIRESISPCPVPPAHA---------KERWILTHVYGH*SR*EDHRKV*I 2309
            K+  E+LL+KG IRES SP   P  +          K R ++ +   + +   D  K+  
Sbjct: 220  KEECEDLLKKGLIRESQSPHSAPAFYVENHNEIKRGKRRMVINYKKMNEATIGDSYKLPR 279

Query: 2310 PYSPPGWYVGLA*CGKIVHKARFHQIRIRPRDEWKTALK-RKEGLFEWVVMPFGLSNAPS 2486
                     G      +  K+ ++Q+R+    +  TA     +  +EW V+ FGL  APS
Sbjct: 280  KDFILEKIKGSLWFSSLDAKSGYYQLRLHENTKPLTAFSCPPQKHYEWNVLSFGLKQAPS 339

Query: 2487 TFMHLMNQVLR 2519
             +   M+Q L+
Sbjct: 340  IYQRFMDQSLK 350
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>O67738:Y1900_AQUAE Uncharacterized protein aq_1900 - Aquifex aeolicus|
          Length = 168

 Score = 39.3 bits (90), Expect = 0.082
 Identities = 17/31 (54%), Positives = 23/31 (74%)
 Frame = +1

Query: 262 TSMEQLEKRMDAAEQQIKELREDLNRRFDQL 354
           T MEQ +KR     Q+I ELRED+N+RF+Q+
Sbjct: 40  TFMEQTDKRFQDLNQRINELREDMNKRFEQV 70
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>P05962:POL_HV2NZ Gag-Pol polyprotein - Human immunodeficiency virus type 2 (isolate|
            NIH-Z subtype A) (HIV-2)
          Length = 1461

 Score = 32.0 bits (71), Expect(2) = 0.11
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +1

Query: 1267 CYKCGKEGHISSGCPLRK 1320
            C+KCGK GH+ + CP R+
Sbjct: 410  CWKCGKSGHVMANCPDRQ 427



 Score = 25.8 bits (55), Expect(2) = 0.11
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +1

Query: 1264 KCYKCGKEGH 1293
            KC+ CGKEGH
Sbjct: 388  KCWNCGKEGH 397
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>P27972:GAG_SIVV1 Gag polyprotein [Contains: Core protein p17; Core protein p24; Core|
            protein p15] - Simian immunodeficiency virus agm.vervet
            (isolate AGM155) (SIV-agm.ver) (Simian immunodeficiency
            virus African green monkey vervet)
          Length = 520

 Score = 38.9 bits (89), Expect = 0.11
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +1

Query: 1225 KQTSGKGKANEGPKCYKCGKEGHISSGCP 1311
            +Q  G+G+    PKCY CGK GH+   CP
Sbjct: 386  QQGGGRGRPRPPPKCYNCGKFGHMQRQCP 414
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>P05891:GAG_HV2NZ Gag polyprotein - Human immunodeficiency virus type 2 (isolate NIH-Z|
            subtype A) (HIV-2)
          Length = 519

 Score = 32.0 bits (71), Expect(2) = 0.11
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +1

Query: 1267 CYKCGKEGHISSGCPLRK 1320
            C+KCGK GH+ + CP R+
Sbjct: 410  CWKCGKSGHVMANCPDRQ 427



 Score = 25.8 bits (55), Expect(2) = 0.11
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +1

Query: 1264 KCYKCGKEGH 1293
            KC+ CGKEGH
Sbjct: 388  KCWNCGKEGH 397
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>P09523:POL_FMVD Enzymatic polyprotein [Contains: Aspartic protease - Figwort mosaic|
            virus (strain DxS) (FMV)
          Length = 666

 Score = 38.5 bits (88), Expect = 0.14
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = +3

Query: 2367 KARFHQIRIRPRDEWKTALKRKEGLFEWVVMPFGLSNAPSTFMHLMNQVL 2516
            K+ F Q+ +    +  TA    +G F+W V+PFGL  APS F   M   L
Sbjct: 335  KSGFWQVVLDEESQKLTAFTCPQGHFQWKVVPFGLKQAPSIFQRHMQTAL 384
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>Q04832:HEXP_LEIMA DNA-binding protein HEXBP - Leishmania major|
          Length = 271

 Score = 38.1 bits (87), Expect = 0.18
 Identities = 15/26 (57%), Positives = 19/26 (73%)
 Frame = +1

Query: 1234 SGKGKANEGPKCYKCGKEGHISSGCP 1311
            S K  A +G +CYKCG+EGH+S  CP
Sbjct: 88   SAKPGAAKGFECYKCGQEGHLSRDCP 113



 Score = 34.7 bits (78), Expect = 2.0
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +1

Query: 1207 VKRPIPKQTSGKGKANEGPKCYKCGKEGHISSGCP 1311
            + R  P    G   A +  KCYKCG+ GH+S  CP
Sbjct: 179  ISRDCPNGQGGYSGAGDR-KCYKCGESGHMSRECP 212



 Score = 34.7 bits (78), Expect = 2.0
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +1

Query: 1198 PPKVKRPIPKQTSGKGKANEGPK--CYKCGKEGHISSGCP 1311
            P  + R  P+     G +  G    CYKCG+ GHIS  CP
Sbjct: 230  PGHISRECPEAGGSYGGSRGGGDRTCYKCGEAGHISRDCP 269



 Score = 34.3 bits (77), Expect = 2.6
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +1

Query: 1225 KQTSGKGKANEGPK-CYKCGKEGHISSGCP 1311
            ++    G    G + CYKCGK GHIS  CP
Sbjct: 209  RECPSAGSTGSGDRACYKCGKPGHISRECP 238



 Score = 32.7 bits (73), Expect = 7.6
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +1

Query: 1207 VKRPIPKQTSGKGKANEGPKCYKCGKEGHISSGCP 1311
            + R  P    G   A +   CYKCG  GHIS  CP
Sbjct: 151  ISRDCPNGQGGYSGAGDRT-CYKCGDAGHISRDCP 184
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>P10258:GAG_MMTVB Gag polyprotein [Contains: Protein p10; Phosphorylated protein pp21;|
            Protein p3; Protein p8; Protein n; Major core protein
            p27; Nucleic acid-binding protein p14] - Mouse mammary
            tumor virus (strain BR6)
          Length = 591

 Score = 37.7 bits (86), Expect = 0.24
 Identities = 17/31 (54%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = +1

Query: 1225 KQTSGKGKAN---EGPKCYKCGKEGHISSGC 1308
            KQT G GK     EGP C+ CGK GHI   C
Sbjct: 510  KQTYGGGKGGQGAEGPVCFSCGKTGHIRKDC 540
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>Q09575:YRD6_CAEEL Uncharacterized protein K02A2.6 - Caenorhabditis elegans|
          Length = 1268

 Score = 37.4 bits (85), Expect = 0.31
 Identities = 29/149 (19%), Positives = 66/149 (44%), Gaps = 15/149 (10%)
 Frame = +1

Query: 907  NRSVLDYTEEFLRLQVRCNLAE--NEDQQVARYINGLNDAIQDRLMMQQIWSIDQAQALA 1080
            ++  LDYT       +   L+   +++  +  ++ GLN    ++  +  +  ++ ++   
Sbjct: 109  SQDYLDYTNSISDAVLDSKLSSMTSDEWSIFLFLRGLNSPGDEKAKLYLMQYVEASEKKN 168

Query: 1081 LKTE---------RFVRTRKTTKAPYLPYPHTEGSSRDHTNRVEEKTAPPKVKRPIP--- 1224
             K +         +F++  + +K   +    ++ S +   N+V+   +  K K+PIP   
Sbjct: 169  EKLKLSDVHDEWMKFIQMHQQSKI--VSVKPSKSSQQVDVNKVDTNRSKKK-KKPIPRKP 225

Query: 1225 -KQTSGKGKANEGPKCYKCGKEGHISSGC 1308
             K +    K  E P C+ C K+GH ++ C
Sbjct: 226  EKSSQDSKKKGEIPTCFYCNKKGHYATNC 254
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>P11284:GAG_MMTVC Gag polyprotein [Contains: Protein p10; Phosphorylated protein pp21;|
            Protein p3; Protein p8; Protein n; Major core protein
            p27; Nucleic acid-binding protein p14] - Mouse mammary
            tumor virus (strain C3H)
          Length = 591

 Score = 37.0 bits (84), Expect = 0.40
 Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = +1

Query: 1225 KQTSGKGKANEG---PKCYKCGKEGHISSGCPLRK 1320
            KQT G GK  +G   P C+ CGK GHI   C   K
Sbjct: 510  KQTYGGGKGGQGSKGPVCFSCGKTGHIKRDCKEEK 544
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>P11368:POL_IPMA Putative Pol polyprotein [Contains: Integrase - Mouse intracisternal|
            a-particle MIA14 (IAP-MIA14)
          Length = 867

 Score = 34.7 bits (78), Expect = 2.0
 Identities = 38/144 (26%), Positives = 61/144 (42%), Gaps = 20/144 (13%)
 Frame = +3

Query: 2115 LPHSRMSPKEHDILKQRVEELLQKGHIRESISPCPVPPAHAKE---RWILTH-------- 2261
            +P   +S ++ + + Q VEE L+ GHI  S SP   P    K+   +W L H        
Sbjct: 31   VPQWHLSSEKLEAVIQLVEEQLKLGHIDPSTSPWNTPIFVIKKKSGKWRLLHDLRPINEQ 90

Query: 2262 --VYGH*SR*EDHRKV*IPYSPPGWYVGLA*CGKIVHKARFHQIRIRPRDEWKTAL---- 2423
              ++G   R        +   P GW + +     I  K  F  I + PRD  + A     
Sbjct: 91   MNLFGPVQR----GLPVLSALPRGWNLII-----IDIKDCFFSIPLCPRDRPRFAFTIPS 141

Query: 2424 ---KRKEGLFEWVVMPFGLSNAPS 2486
                  +  ++W V+P G+SN+P+
Sbjct: 142  INSDEPDNRYQWKVLPQGMSNSPT 165
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>P16818:UL61_HCMVA Uncharacterized protein UL61 - Human cytomegalovirus (strain AD169)|
            (HHV-5) (Human herpesvirus 5)
          Length = 431

 Score = 34.7 bits (78), Expect = 2.0
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +1

Query: 1210 KRPIPKQTSGKGKANEGPKCYKCGKEGHISSGCPL 1314
            +RP     S K KA  GPK  K G+EG +  G P+
Sbjct: 177  RRPTAATPSRKKKARRGPKASKAGREGELGGGSPV 211
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>P63128:POK4_HUMAN HERV-K_6q14.1 provirus ancestral Gag-Pol polyprotein - Homo sapiens|
            (Human)
          Length = 1117

 Score = 34.7 bits (78), Expect = 2.0
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 1258 GPKCYKCGKEGHISSGCPLRKFVNTTI 1338
            G KCY CG+ GH+   CP+    N TI
Sbjct: 543  GGKCYNCGQIGHLKKNCPVLNKQNITI 569
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>P62685:GAK6_HUMAN HERV-K_8p23.1 provirus ancestral Gag polyprotein - Homo sapiens|
            (Human)
          Length = 647

 Score = 34.7 bits (78), Expect = 2.0
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 1258 GPKCYKCGKEGHISSGCPLRKFVNTTI 1338
            G KCY CG+ GH+   CP+    N TI
Sbjct: 543  GGKCYNCGQIGHLKKNCPVLNKQNITI 569
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>P62684:GAK5_HUMAN HERV-K_19p13.11 provirus ancestral Gag polyprotein - Homo sapiens|
            (Human)
          Length = 666

 Score = 34.7 bits (78), Expect = 2.0
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 1258 GPKCYKCGKEGHISSGCPLRKFVNTTI 1338
            G KCY CG+ GH+   CP+    N TI
Sbjct: 543  GGKCYNCGQIGHLKKNCPVLNKQNITI 569
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>P63126:GAK4_HUMAN HERV-K_6q14.1 provirus ancestral Gag polyprotein - Homo sapiens|
            (Human)
          Length = 666

 Score = 34.7 bits (78), Expect = 2.0
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 1258 GPKCYKCGKEGHISSGCPLRKFVNTTI 1338
            G KCY CG+ GH+   CP+    N TI
Sbjct: 543  GGKCYNCGQIGHLKKNCPVLNKQNITI 569
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>Q9YNA8:GAK3_HUMAN HERV-K_19q12 provirus ancestral Gag polyprotein - Homo sapiens|
            (Human)
          Length = 666

 Score = 34.7 bits (78), Expect = 2.0
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 1258 GPKCYKCGKEGHISSGCPLRKFVNTTI 1338
            G KCY CG+ GH+   CP+    N TI
Sbjct: 543  GGKCYNCGQIGHLKKNCPVLNKQNITI 569
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>Q7LDI9:GAK2_HUMAN HERV-K_7p22.1 provirus ancestral Gag polyprotein - Homo sapiens|
            (Human)
          Length = 666

 Score = 34.7 bits (78), Expect = 2.0
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 1258 GPKCYKCGKEGHISSGCPLRKFVNTTI 1338
            G KCY CG+ GH+   CP+    N TI
Sbjct: 543  GRKCYNCGQIGHLKKNCPVLNKQNITI 569
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>P62683:GAK1_HUMAN HERV-K_12q14.1 provirus ancestral Gag polyprotein - Homo sapiens|
            (Human)
          Length = 666

 Score = 34.7 bits (78), Expect = 2.0
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 1258 GPKCYKCGKEGHISSGCPLRKFVNTTI 1338
            G KCY CG+ GH+   CP+    N TI
Sbjct: 543  GGKCYNCGQIGHLKKNCPVLNKQNITI 569
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>P63130:GAK12_HUMAN HERV-K_1q22 provirus ancestral Gag polyprotein - Homo sapiens (Human)|
          Length = 666

 Score = 34.7 bits (78), Expect = 2.0
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 1258 GPKCYKCGKEGHISSGCPLRKFVNTTI 1338
            G KCY CG+ GH+   CP+    N TI
Sbjct: 543  GGKCYNCGQIGHLKKNCPVLNKQNITI 569
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>P63145:GAK11_HUMAN HERV-K_22q11.21 provirus ancestral Gag polyprotein - Homo sapiens|
            (Human)
          Length = 666

 Score = 34.7 bits (78), Expect = 2.0
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 1258 GPKCYKCGKEGHISSGCPLRKFVNTTI 1338
            G KCY CG+ GH+   CP+    N TI
Sbjct: 543  GGKCYNCGQIGHLKKNCPVLNKQNITI 569
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>P87889:GAK10_HUMAN HERV-K_5q33.3 provirus ancestral Gag polyprotein - Homo sapiens|
            (Human)
          Length = 666

 Score = 34.7 bits (78), Expect = 2.0
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 1258 GPKCYKCGKEGHISSGCPLRKFVNTTI 1338
            G KCY CG+ GH+   CP+    N TI
Sbjct: 543  GGKCYNCGQIGHLKKNCPVLNKQNITI 569
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>Q5SP50:ZCRB1_DANRE Zinc finger CCHC-type and RNA-binding motif-containing protein 1 -|
            Danio rerio (Zebrafish) (Brachydanio rerio)
          Length = 218

 Score = 34.3 bits (77), Expect = 2.6
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = +1

Query: 1264 KCYKCGKEGHISSGCP 1311
            KCY+CG+EGH+S  CP
Sbjct: 106  KCYECGEEGHLSYACP 121
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>Q76634:POL_HV2UC Gag-Pol polyprotein - Human immunodeficiency virus type 2 (isolate|
            UC1 subtype B) (HIV-2)
          Length = 1471

 Score = 34.3 bits (77), Expect = 2.6
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +1

Query: 1231 TSGKGKANEGPKCYKCGKEGHISSGCPLRK 1320
            T+ + +A     C+KCGK+GHI S CP R+
Sbjct: 399  TAKQCRAPRRQGCWKCGKQGHIMSKCPERQ 428
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>P43596:IOC3_YEAST ISWI one complex protein 3 - Saccharomyces cerevisiae (Baker's yeast)|
          Length = 787

 Score = 34.3 bits (77), Expect = 2.6
 Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 1/95 (1%)
 Frame = +1

Query: 1009 LNDAIQDRLMMQQIWSIDQAQALALKTERFVRTRKTTKAPYLPYPHTEGSSRDHTNRVEE 1188
            L D   DR+ M      DQ+ +++  ++   R+R+  K     Y   E   ++  N+ + 
Sbjct: 23   LADHDHDRVSMAMPLQTDQSVSVSQSSDNLRRSRRVPKPRTSIYDEYEEELKERANKPKR 82

Query: 1189 K-TAPPKVKRPIPKQTSGKGKANEGPKCYKCGKEG 1290
            K  APPK K P  + +    K  E  K     K+G
Sbjct: 83   KRPAPPKKKAPSTQNSKSNDKV-EKKKTTSIAKDG 116
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>Q76633:GAG_HV2UC Gag polyprotein - Human immunodeficiency virus type 2 (isolate UC1|
            subtype B) (HIV-2)
          Length = 521

 Score = 34.3 bits (77), Expect = 2.6
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +1

Query: 1231 TSGKGKANEGPKCYKCGKEGHISSGCPLRK 1320
            T+ + +A     C+KCGK+GHI S CP R+
Sbjct: 399  TAKQCRAPRRQGCWKCGKQGHIMSKCPERQ 428
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>Q89928:POL_HV2EH Gag-Pol polyprotein - Human immunodeficiency virus type 2 (isolate|
            EHO subtype B) (HIV-2)
          Length = 1464

 Score = 33.9 bits (76), Expect = 3.4
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +1

Query: 1231 TSGKGKANEGPKCYKCGKEGHISSGCPLRK 1320
            T+ + KA     C+KCG++GHI S CP R+
Sbjct: 398  TARQCKAPRRQGCWKCGQQGHIMSKCPERQ 427
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>Q79666:POL_HV1MV Gag-Pol polyprotein - Human immunodeficiency virus type 1 (isolate|
            MVP5180 group O) (HIV-1)
          Length = 1446

 Score = 33.9 bits (76), Expect = 3.4
 Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +1

Query: 1237 GKGKANEGP-KCYKCGKEGHISSGC 1308
            G+    +GP KC+ CGKEGHI+  C
Sbjct: 385  GQNPNRKGPIKCFNCGKEGHIAKNC 409
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>Q74230:GAG_HV2EH Gag polyprotein - Human immunodeficiency virus type 2 (isolate EHO|
            subtype B) (HIV-2)
          Length = 519

 Score = 33.9 bits (76), Expect = 3.4
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +1

Query: 1231 TSGKGKANEGPKCYKCGKEGHISSGCPLRK 1320
            T+ + KA     C+KCG++GHI S CP R+
Sbjct: 398  TARQCKAPRRQGCWKCGQQGHIMSKCPERQ 427
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>Q79665:GAG_HV1MV Gag polyprotein - Human immunodeficiency virus type 1 (isolate|
            MVP5180 group O) (HIV-1)
          Length = 498

 Score = 33.9 bits (76), Expect = 3.4
 Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +1

Query: 1237 GKGKANEGP-KCYKCGKEGHISSGC 1308
            G+    +GP KC+ CGKEGHI+  C
Sbjct: 385  GQNPNRKGPIKCFNCGKEGHIAKNC 409
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>Q5FVR7:CPSF4_RAT Cleavage and polyadenylation specificity factor subunit 4 - Rattus|
            norvegicus (Rat)
          Length = 243

 Score = 33.9 bits (76), Expect = 3.4
 Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 9/81 (11%)
 Frame = +1

Query: 1093 RFVRTRKTTKAPYLPYPHTEGSSRDHTNRVEEKTAPPKVKRPIP---KQTSGKGKANEGP 1263
            RF     TT+ P LP                ++T PP  + P      Q+      N GP
Sbjct: 168  RFELPMGTTEQPPLP----------------QQTQPPTKRAPQVIGVMQSQNSSAGNRGP 211

Query: 1264 K------CYKCGKEGHISSGC 1308
            +      CYKCG++GH ++ C
Sbjct: 212  RPLEQVTCYKCGEKGHYANRC 232
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>Q8BQZ5:CPSF4_MOUSE Cleavage and polyadenylation specificity factor subunit 4 - Mus|
            musculus (Mouse)
          Length = 211

 Score = 33.9 bits (76), Expect = 3.4
 Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 9/81 (11%)
 Frame = +1

Query: 1093 RFVRTRKTTKAPYLPYPHTEGSSRDHTNRVEEKTAPPKVKRPIP---KQTSGKGKANEGP 1263
            RF     TT+ P LP                ++T PP  + P      Q+      N GP
Sbjct: 136  RFELPMGTTEQPPLP----------------QQTQPPTKRAPQVIGVMQSQNSSAGNRGP 179

Query: 1264 K------CYKCGKEGHISSGC 1308
            +      CYKCG++GH ++ C
Sbjct: 180  RPLEQVTCYKCGEKGHYANRC 200
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>P05400:POL_CERV Enzymatic polyprotein [Contains: Aspartic protease - Carnation etched|
            ring virus (CERV)
          Length = 659

 Score = 33.5 bits (75), Expect = 4.5
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +3

Query: 2367 KARFHQIRIRPRDEWKTALKRKEGLFEWVVMPFGLSNAPSTF 2492
            K+   Q+ +    +  TA    +G ++W V+PFGL  APS F
Sbjct: 324  KSGLWQVLLDKESQLLTAFTCPQGHYQWNVVPFGLKQAPSIF 365
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>P19560:POL_BIV29 Gag-Pol polyprotein - Bovine immunodeficiency virus (strain R29)|
            (BIV) (Bovine immunodeficiency-like virus)
          Length = 1475

 Score = 33.5 bits (75), Expect = 4.5
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +1

Query: 1201 PKVKRPIPKQTSGKGKANEGPKCYKCGKEGHISSGCPLRK 1320
            P        QTSG     +G +CY CGK GH+   C  +K
Sbjct: 386  PHTPEAYASQTSGP---EDGRRCYGCGKTGHLKRNCKQQK 422
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>Q63TP8:IF2_BURPS Translation initiation factor IF-2 - Burkholderia pseudomallei|
           (Pseudomonas pseudomallei)
          Length = 975

 Score = 33.5 bits (75), Expect = 4.5
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
 Frame = +1

Query: 250 EQAATSMEQLEKRMDAAEQQIKELREDLN---RRFDQLVEMIRKGVPPAANDGDSSIEDI 420
           ++A    E++ KR +AAE + + +RE +N   R   + VE  +   PPAA   ++     
Sbjct: 239 DKARAEQEEIRKRREAAEAEARAIREMMNTPRRAQVKAVEPPKPAEPPAAKAAEA----- 293

Query: 421 QQRRGNLGARPPQQRAGQSTKRRPIYVEGSEG 516
              +G L    P + AG++   RP   + + G
Sbjct: 294 ---KGTL--HKPAKPAGEAAAARPAAKKPASG 320
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>Q3JSY9:IF2_BURP1 Translation initiation factor IF-2 - Burkholderia pseudomallei|
           (strain 1710b)
          Length = 975

 Score = 33.5 bits (75), Expect = 4.5
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
 Frame = +1

Query: 250 EQAATSMEQLEKRMDAAEQQIKELREDLN---RRFDQLVEMIRKGVPPAANDGDSSIEDI 420
           ++A    E++ KR +AAE + + +RE +N   R   + VE  +   PPAA   ++     
Sbjct: 239 DKARAEQEEIRKRREAAEAEARAIREMMNTPRRAQVKAVEPPKPAEPPAAKAAEA----- 293

Query: 421 QQRRGNLGARPPQQRAGQSTKRRPIYVEGSEG 516
              +G L    P + AG++   RP   + + G
Sbjct: 294 ---KGTL--HKPAKPAGEAAAARPAAKKPASG 320
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>Q62KK9:IF2_BURMA Translation initiation factor IF-2 - Burkholderia mallei|
           (Pseudomonas mallei)
          Length = 975

 Score = 33.5 bits (75), Expect = 4.5
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
 Frame = +1

Query: 250 EQAATSMEQLEKRMDAAEQQIKELREDLN---RRFDQLVEMIRKGVPPAANDGDSSIEDI 420
           ++A    E++ KR +AAE + + +RE +N   R   + VE  +   PPAA   ++     
Sbjct: 239 DKARAEQEEIRKRREAAEAEARAIREMMNTPRRAQVKAVEPPKPAEPPAAKAAEA----- 293

Query: 421 QQRRGNLGARPPQQRAGQSTKRRPIYVEGSEG 516
              +G L    P + AG++   RP   + + G
Sbjct: 294 ---KGTL--HKPAKPAGEAAAARPAAKKPASG 320
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>Q07653:HBT1_YEAST Protein HBT1 - Saccharomyces cerevisiae (Baker's yeast)|
          Length = 1046

 Score = 33.5 bits (75), Expect = 4.5
 Identities = 22/62 (35%), Positives = 25/62 (40%)
 Frame = +1

Query: 1114 TTKAPYLPYPHTEGSSRDHTNRVEEKTAPPKVKRPIPKQTSGKGKANEGPKCYKCGKEGH 1293
            T+KA   P  HT G S   T+ V        VK   P  T    KAN GP        GH
Sbjct: 183  TSKAATSPVTHTHGHSSATTSPVTHTHGHASVKTTSPTNTHEHSKANTGPSA-TATTHGH 241

Query: 1294 IS 1299
            I+
Sbjct: 242  IN 243
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>P20759:GC1_RAT Ig gamma-1 chain C region - Rattus norvegicus (Rat)|
          Length = 326

 Score = 33.5 bits (75), Expect = 4.5
 Identities = 15/57 (26%), Positives = 32/57 (56%)
 Frame = +1

Query: 1840 PNKIDGNISKEEGKSMLTISHTSNEFMEDMKEADLCVALIVKGEEHPTVEISGKVRG 2010
            P+ I+  ISK EG++ +   +T +   E+M + ++ +  +VKG   P + +  ++ G
Sbjct: 208  PSPIEKTISKPEGRTQVPHVYTMSPTKEEMTQNEVSITCMVKGFYPPDIYVEWQMNG 264
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>P19558:GAG_BIV29 Gag polyprotein - Bovine immunodeficiency virus (strain R29) (BIV)|
            (Bovine immunodeficiency-like virus)
          Length = 476

 Score = 33.5 bits (75), Expect = 4.5
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +1

Query: 1201 PKVKRPIPKQTSGKGKANEGPKCYKCGKEGHISSGCPLRK 1320
            P        QTSG     +G +CY CGK GH+   C  +K
Sbjct: 386  PHTPEAYASQTSGP---EDGRRCYGCGKTGHLKRNCKQQK 422
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>Q8C7Q4:RBM4_MOUSE RNA-binding protein 4 - Mus musculus (Mouse)|
          Length = 361

 Score = 33.1 bits (74), Expect = 5.8
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +1

Query: 1267 CYKCGKEGHISSGCPL 1314
            CY+CGKEGH S  CP+
Sbjct: 162  CYRCGKEGHWSKECPI 177
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>Q4R979:RBM4_MACFA RNA-binding protein 4 - Macaca fascicularis (Crab eating macaque)|
            (Cynomolgus monkey)
          Length = 364

 Score = 33.1 bits (74), Expect = 5.8
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +1

Query: 1267 CYKCGKEGHISSGCPL 1314
            CY+CGKEGH S  CP+
Sbjct: 162  CYRCGKEGHWSKECPI 177
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>Q9BWF3:RBM4_HUMAN RNA-binding protein 4 - Homo sapiens (Human)|
          Length = 364

 Score = 33.1 bits (74), Expect = 5.8
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +1

Query: 1267 CYKCGKEGHISSGCPL 1314
            CY+CGKEGH S  CP+
Sbjct: 162  CYRCGKEGHWSKECPI 177
to top
>P15833:POL_HV2D2 Gag-Pol polyprotein - Human immunodeficiency virus type 2 (isolate|
            D205 subtype B) (HIV-2)
          Length = 1465

 Score = 33.1 bits (74), Expect = 5.8
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +1

Query: 1231 TSGKGKANEGPKCYKCGKEGHISSGCPLRK 1320
            T+ + +A     C+KCGK GHI S CP R+
Sbjct: 399  TARQCRAPRRQGCWKCGKTGHIMSKCPERQ 428
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>P15832:GAG_HV2D2 Gag polyprotein - Human immunodeficiency virus type 2 (isolate D205|
            subtype B) (HIV-2)
          Length = 521

 Score = 33.1 bits (74), Expect = 5.8
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +1

Query: 1231 TSGKGKANEGPKCYKCGKEGHISSGCPLRK 1320
            T+ + +A     C+KCGK GHI S CP R+
Sbjct: 399  TARQCRAPRRQGCWKCGKTGHIMSKCPERQ 428
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>P33458:GAG_CAEVC Gag polyprotein [Contains: Core protein p16; Core protein p25; Core|
            protein p14] - Caprine arthritis encephalitis virus
            (strain Cork) (CAEV-Co)
          Length = 441

 Score = 33.1 bits (74), Expect = 5.8
 Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +1

Query: 1237 GKGKANEGP-KCYKCGKEGHISSGC 1308
            GKGK N  P +CY CGK GH +  C
Sbjct: 370  GKGKGNGQPQRCYNCGKPGHQARQC 394
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>P03344:GAG_BLVJ Gag polyprotein [Contains: Core protein p15 - Bovine leukemia virus|
            (isolate Japanese BLV-1) (BLV)
          Length = 392

 Score = 33.1 bits (74), Expect = 5.8
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = +1

Query: 1201 PKVKRPIPKQTSGKGKANEGPKCYKCGKEGHISSGCPLR 1317
            P  K P P+Q + K +   GP CY+C KEGH +  CP +
Sbjct: 327  PGPKMPGPRQPAPK-RPPPGP-CYRCLKEGHWARDCPTK 363
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>P25058:GAG_BLVAU Gag polyprotein [Contains: Core protein p15 - Bovine leukemia virus|
            (isolate Australian) (BLV)
          Length = 392

 Score = 33.1 bits (74), Expect = 5.8
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = +1

Query: 1201 PKVKRPIPKQTSGKGKANEGPKCYKCGKEGHISSGCPLR 1317
            P  K P P+Q + K +   GP CY+C KEGH +  CP +
Sbjct: 327  PGPKMPGPRQPAPK-RPPPGP-CYRCLKEGHWARDCPTK 363
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>Q148A4:CK066_MOUSE Uncharacterized protein C11orf66 homolog - Mus musculus (Mouse)|
          Length = 427

 Score = 33.1 bits (74), Expect = 5.8
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 11/64 (17%)
 Frame = +1

Query: 1108 RKTTKAPYLPYPHTEGSS----------RDHT-NRVEEKTAPPKVKRPIPKQTSGKGKAN 1254
            R  TK+ YLP  H +GS           RD   +RV E+T  P+V  P P+  S   ++ 
Sbjct: 235  RSITKSDYLPVTHPQGSDFLPVLSRGSDRDTGFSRVNERTLNPRVPTPAPQPASMSHRSY 294

Query: 1255 EGPK 1266
            + P+
Sbjct: 295  QPPQ 298
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>O77086:C3G_DROME Guanine nucleotide-releasing factor 2 - Drosophila melanogaster|
            (Fruit fly)
          Length = 1571

 Score = 32.7 bits (73), Expect = 7.6
 Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 21/74 (28%)
 Frame = +3

Query: 2070 IQYSIDLIPGASLP-----------------NLPHSRMSPKEHDILKQRVEELLQKGHIR 2198
            I  ++   PGAS+P                 +LP   ++PKE DIL+Q     ++  H  
Sbjct: 465  IMGAVTASPGASVPGTGVMRVSAAESAAQRTSLPDIALTPKERDILEQHNVNPMRGSHST 524

Query: 2199 ESI----SPCPVPP 2228
            ESI    SP P PP
Sbjct: 525  ESILRDTSPPPKPP 538
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>Q9BDY9:RBM4_RABIT RNA-binding protein 4 - Oryctolagus cuniculus (Rabbit)|
          Length = 359

 Score = 32.7 bits (73), Expect = 7.6
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +1

Query: 1267 CYKCGKEGHISSGCPL 1314
            CY+CGKEGH S  CP+
Sbjct: 162  CYRCGKEGHWSKECPV 177
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>Q3MHX3:RBM4_BOVIN RNA-binding protein 4 - Bos taurus (Bovine)|
          Length = 362

 Score = 32.7 bits (73), Expect = 7.6
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +1

Query: 1267 CYKCGKEGHISSGCPL 1314
            CY+CGKEGH S  CP+
Sbjct: 162  CYRCGKEGHWSKECPV 177
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>Q64LC9:RBM4B_RAT RNA-binding protein 4B - Rattus norvegicus (Rat)|
          Length = 357

 Score = 32.7 bits (73), Expect = 7.6
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +1

Query: 1267 CYKCGKEGHISSGCPL 1314
            CY+CGKEGH S  CP+
Sbjct: 162  CYRCGKEGHWSKECPV 177
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>Q06AT9:RBM4B_PIG RNA-binding protein 4B - Sus scrofa (Pig)|
          Length = 359

 Score = 32.7 bits (73), Expect = 7.6
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +1

Query: 1267 CYKCGKEGHISSGCPL 1314
            CY+CGKEGH S  CP+
Sbjct: 162  CYRCGKEGHWSKECPV 177
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>Q8VE92:RBM4B_MOUSE RNA-binding protein 4B - Mus musculus (Mouse)|
          Length = 357

 Score = 32.7 bits (73), Expect = 7.6
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +1

Query: 1267 CYKCGKEGHISSGCPL 1314
            CY+CGKEGH S  CP+
Sbjct: 162  CYRCGKEGHWSKECPV 177
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>Q9BQ04:RBM4B_HUMAN RNA-binding protein 4B - Homo sapiens (Human)|
          Length = 359

 Score = 32.7 bits (73), Expect = 7.6
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +1

Query: 1267 CYKCGKEGHISSGCPL 1314
            CY+CGKEGH S  CP+
Sbjct: 162  CYRCGKEGHWSKECPV 177
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>P17757:POL_HV2D1 Gag-Pol polyprotein - Human immunodeficiency virus type 2 (isolate|
            D194 subtype A) (HIV-2)
          Length = 1462

 Score = 32.7 bits (73), Expect = 7.6
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +1

Query: 1267 CYKCGKEGHISSGCPLRK 1320
            C+KCGK GHI + CP R+
Sbjct: 412  CWKCGKSGHIMANCPERQ 429
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>Q9QBY3:POL_HV196 Gag-Pol polyprotein - Human immunodeficiency virus type 1 (isolate|
            96CM-MP535 group M subtype K) (HIV-1)
          Length = 1430

 Score = 32.7 bits (73), Expect = 7.6
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +1

Query: 1195 APPKVKRPIPKQTSGKGKANEG-PKCYKCGKEGHISSGC 1308
            A  +V  P+     G  K +    KC+ CGKEGHI+  C
Sbjct: 362  AMSQVTNPVVMMQKGNFKGHRKIVKCFNCGKEGHIARNC 400
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>P17756:GAG_HV2D1 Gag polyprotein - Human immunodeficiency virus type 2 (isolate D194|
            subtype A) (HIV-2)
          Length = 521

 Score = 32.7 bits (73), Expect = 7.6
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +1

Query: 1267 CYKCGKEGHISSGCPLRK 1320
            C+KCGK GHI + CP R+
Sbjct: 412  CWKCGKSGHIMANCPERQ 429
to top
>Q9QBY4:GAG_HV196 Gag polyprotein - Human immunodeficiency virus type 1 (isolate|
            96CM-MP535 group M subtype K) (HIV-1)
          Length = 495

 Score = 32.7 bits (73), Expect = 7.6
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +1

Query: 1195 APPKVKRPIPKQTSGKGKANEG-PKCYKCGKEGHISSGC 1308
            A  +V  P+     G  K +    KC+ CGKEGHI+  C
Sbjct: 362  AMSQVTNPVVMMQKGNFKGHRKIVKCFNCGKEGHIARNC 400
to top
>Q499V6:ZCRB1_RAT Zinc finger CCHC-type and RNA-binding motif-containing protein 1 -|
            Rattus norvegicus (Rat)
          Length = 217

 Score = 32.3 bits (72), Expect = 10.0
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +1

Query: 1264 KCYKCGKEGHISSGCP 1311
            KCY+CG+ GH+S  CP
Sbjct: 106  KCYECGESGHLSYACP 121
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>Q9CZ96:ZCRB1_MOUSE Zinc finger CCHC-type and RNA-binding motif-containing protein 1 -|
            Mus musculus (Mouse)
          Length = 217

 Score = 32.3 bits (72), Expect = 10.0
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +1

Query: 1264 KCYKCGKEGHISSGCP 1311
            KCY+CG+ GH+S  CP
Sbjct: 106  KCYECGESGHLSYACP 121
to top
>Q8TBF4:ZCRB1_HUMAN Zinc finger CCHC-type and RNA-binding motif-containing protein 1 -|
            Homo sapiens (Human)
          Length = 217

 Score = 32.3 bits (72), Expect = 10.0
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +1

Query: 1264 KCYKCGKEGHISSGCP 1311
            KCY+CG+ GH+S  CP
Sbjct: 106  KCYECGESGHLSYACP 121
to top
>Q56JZ7:ZCRB1_BOVIN Zinc finger CCHC-type and RNA-binding motif-containing protein 1 -|
            Bos taurus (Bovine)
          Length = 217

 Score = 32.3 bits (72), Expect = 10.0
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +1

Query: 1264 KCYKCGKEGHISSGCP 1311
            KCY+CG+ GH+S  CP
Sbjct: 106  KCYECGESGHLSYACP 121
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>Q9N2R3:TPM_CHAFE Tropomyosin - Charybdis feriatus (Crab)|
          Length = 264

 Score = 32.3 bits (72), Expect = 10.0
 Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 9/58 (15%)
 Frame = +1

Query: 280 EKRMDAAEQQIKELR---EDLNRRFDQ------LVEMIRKGVPPAANDGDSSIEDIQQ 426
           E+RMDA E Q+KE R   E+ +R++D+      +VE   +     A  G+S I ++++
Sbjct: 138 EERMDALENQLKEARFLAEEADRKYDEVARKLAMVEADLERAEERAESGESKIVELEE 195
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>Q6IQ97:RBM4_DANRE RNA-binding protein 4 - Danio rerio (Zebrafish) (Brachydanio rerio)|
          Length = 419

 Score = 32.3 bits (72), Expect = 10.0
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +1

Query: 1267 CYKCGKEGHISSGCPL 1314
            CY+CG+EGH S  CPL
Sbjct: 162  CYRCGQEGHWSKECPL 177
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>P12451:POL_HV2SB Gag-Pol polyprotein - Human immunodeficiency virus type 2 (isolate|
            SBLISY subtype A) (HIV-2)
          Length = 1462

 Score = 32.3 bits (72), Expect = 10.0
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +1

Query: 1267 CYKCGKEGHISSGCPLRK 1320
            C+KCGK GHI + CP R+
Sbjct: 411  CWKCGKSGHIMANCPDRQ 428
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>Q74120:POL_HV2KR Gag-Pol polyprotein - Human immunodeficiency virus type 2 (isolate KR|
            subtype A) (HIV-2)
          Length = 1463

 Score = 32.3 bits (72), Expect = 10.0
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +1

Query: 1267 CYKCGKEGHISSGCPLRK 1320
            C+KCGK GH+ + CP R+
Sbjct: 412  CWKCGKSGHVMANCPERQ 429
to top
>P18096:POL_HV2BE Gag-Pol polyprotein - Human immunodeficiency virus type 2 (isolate|
            BEN subtype A) (HIV-2)
          Length = 1550

 Score = 32.3 bits (72), Expect = 10.0
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +1

Query: 1267 CYKCGKEGHISSGCPLRK 1320
            C+KCGK GHI + CP R+
Sbjct: 412  CWKCGKPGHIMANCPERQ 429
to top
>P12499:POL_HV1Z2 Gag-Pol polyprotein - Human immunodeficiency virus type 1 (isolate|
            Z2/CDC-Z34 group M subtype D) (HIV-1)
          Length = 1436

 Score = 32.3 bits (72), Expect = 10.0
 Identities = 13/21 (61%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
 Frame = +1

Query: 1264 KCYKCGKEGHISSGC--PLRK 1320
            KC+ CGKEGHI+  C  P RK
Sbjct: 393  KCFNCGKEGHIAKNCRAPRRK 413
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>P27978:GAG_SIVVG Gag polyprotein [Contains: Core protein p17; Core protein p24; Core|
            protein p15] - Simian immunodeficiency virus agm.vervet
            (isolate AGM3) (SIV-agm.ver) (Simian immunodeficiency
            virus African green monkey vervet)
          Length = 521

 Score = 32.3 bits (72), Expect = 10.0
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 1225 KQTSGKGKANEGPKCYKCGKEGHISSGCP 1311
            +Q   +G+     KCY CGK GH+   CP
Sbjct: 390  QQGGQRGRPRPPVKCYNCGKFGHMQRQCP 418
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>P12450:GAG_HV2SB Gag polyprotein - Human immunodeficiency virus type 2 (isolate SBLISY|
            subtype A) (HIV-2)
          Length = 520

 Score = 32.3 bits (72), Expect = 10.0
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +1

Query: 1267 CYKCGKEGHISSGCPLRK 1320
            C+KCGK GHI + CP R+
Sbjct: 411  CWKCGKSGHIMANCPDRQ 428
to top
>Q74119:GAG_HV2KR Gag polyprotein - Human immunodeficiency virus type 2 (isolate KR|
            subtype A) (HIV-2)
          Length = 521

 Score = 32.3 bits (72), Expect = 10.0
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +1

Query: 1267 CYKCGKEGHISSGCPLRK 1320
            C+KCGK GH+ + CP R+
Sbjct: 412  CWKCGKSGHVMANCPERQ 429
to top
>P18095:GAG_HV2BE Gag polyprotein - Human immunodeficiency virus type 2 (isolate BEN|
            subtype A) (HIV-2)
          Length = 521

 Score = 32.3 bits (72), Expect = 10.0
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +1

Query: 1267 CYKCGKEGHISSGCPLRK 1320
            C+KCGK GHI + CP R+
Sbjct: 412  CWKCGKPGHIMANCPERQ 429
to top
>P12495:GAG_HV1Z2 Gag polyprotein - Human immunodeficiency virus type 1 (isolate|
            Z2/CDC-Z34 group M subtype D) (HIV-1)
          Length = 501

 Score = 32.3 bits (72), Expect = 10.0
 Identities = 13/21 (61%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
 Frame = +1

Query: 1264 KCYKCGKEGHISSGC--PLRK 1320
            KC+ CGKEGHI+  C  P RK
Sbjct: 393  KCFNCGKEGHIAKNCRAPRRK 413
to top
>O19137:CPSF4_BOVIN Cleavage and polyadenylation specificity factor subunit 4 - Bos|
            taurus (Bovine)
          Length = 243

 Score = 32.3 bits (72), Expect = 10.0
 Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 9/81 (11%)
 Frame = +1

Query: 1093 RFVRTRKTTKAPYLPYPHTEGSSRDHTNRVEEKTAPPKVKRP-----IPKQTSGKGKANE 1257
            RF     TT+ P LP                ++T PP  + P     +  Q S  G    
Sbjct: 168  RFELPMGTTEQPPLP----------------QQTQPPTKRTPQVIGVMQSQNSSAGSRGP 211

Query: 1258 GP----KCYKCGKEGHISSGC 1308
             P     CYKCG++GH ++ C
Sbjct: 212  RPLEQVTCYKCGEKGHYANRC 232


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 471,976,203
Number of extensions: 10854407
Number of successful extensions: 28894
Number of sequences better than 10.0: 95
Number of HSP's gapped: 28880
Number of HSP's successfully gapped: 114
Length of query: 849
Length of database: 100,686,439
Length adjustment: 122
Effective length of query: 727
Effective length of database: 67,222,449
Effective search space: 48870720423
Effective search space used: 48870720423
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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