ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf87i15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1P80883:PETM_SPIOL Cytochrome b6-f complex subunit 7 - Spinacia o... 49 1e-05
2Q42496:PETM_CHLRE Cytochrome b6-f complex subunit 7, chloroplast... 33 0.73
3Q1XDL1:PETM_PORYE Cytochrome b6-f complex subunit 7 - Porphyra y... 32 1.6
4P48366:PETM_CYAPA Cytochrome b6-f complex subunit 7 - Cyanophora... 31 3.6
5Q7NLN8:PETM_GLOVI Cytochrome b6-f complex subunit 7 - Gloeobacte... 31 4.7
6Q4G3B3:PETM_EMIHU Cytochrome b6-f complex subunit 7 - Emiliania ... 31 4.7
7P51275:PETM_PORPU Cytochrome b6-f complex subunit 7 - Porphyra p... 30 8.0

>P80883:PETM_SPIOL Cytochrome b6-f complex subunit 7 - Spinacia oleracea (Spinach)|
          Length = 36
 Score = 49.3 bits (116), Expect = 1e-05
 Identities = 24/29 (82%), Positives = 26/29 (89%)
 Frame = +2

Query: 341 NAAGEIFQIAVVMNALTLVGVAVGFVLLR 427
           NAA EIF+IA VMN LTLVGVA+GFVLLR
Sbjct: 1   NAAAEIFRIAAVMNGLTLVGVAIGFVLLR 29



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>Q42496:PETM_CHLRE Cytochrome b6-f complex subunit 7, chloroplast precursor -|
           Chlamydomonas reinhardtii
          Length = 99

 Score = 33.5 bits (75), Expect = 0.73
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 10/56 (17%)
 Frame = +2

Query: 290 SLSPAGKRRGGTFGAQCNAAGEIFQIA----------VVMNALTLVGVAVGFVLLR 427
           SL  AG++   + G    A  E+  IA          + M  +TLVG+A+GFVLLR
Sbjct: 34  SLRTAGQKAAPSRGVATKAVNELAMIAGEAEFIAGTALTMVGMTLVGLAIGFVLLR 89



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>Q1XDL1:PETM_PORYE Cytochrome b6-f complex subunit 7 - Porphyra yezoensis|
          Length = 32

 Score = 32.3 bits (72), Expect = 1.6
 Identities = 14/26 (53%), Positives = 21/26 (80%)
 Frame = +2

Query: 350 GEIFQIAVVMNALTLVGVAVGFVLLR 427
           GEI + AV+ + L LVG+A+GF+LL+
Sbjct: 3   GEIVESAVLSSVLVLVGLAIGFLLLK 28



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>P48366:PETM_CYAPA Cytochrome b6-f complex subunit 7 - Cyanophora paradoxa|
          Length = 33

 Score = 31.2 bits (69), Expect = 3.6
 Identities = 13/25 (52%), Positives = 20/25 (80%)
 Frame = +2

Query: 353 EIFQIAVVMNALTLVGVAVGFVLLR 427
           +IF  AV+   LTL+G+++GFVLL+
Sbjct: 4   QIFNTAVICFTLTLIGLSLGFVLLK 28



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>Q7NLN8:PETM_GLOVI Cytochrome b6-f complex subunit 7 - Gloeobacter violaceus|
          Length = 36

 Score = 30.8 bits (68), Expect = 4.7
 Identities = 14/26 (53%), Positives = 21/26 (80%)
 Frame = +2

Query: 350 GEIFQIAVVMNALTLVGVAVGFVLLR 427
           GEIF +A ++  LTLVG+A+GF +L+
Sbjct: 3   GEIFFVAGLVFVLTLVGMAIGFGVLK 28



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>Q4G3B3:PETM_EMIHU Cytochrome b6-f complex subunit 7 - Emiliania huxleyi|
          Length = 32

 Score = 30.8 bits (68), Expect = 4.7
 Identities = 16/27 (59%), Positives = 20/27 (74%)
 Frame = +2

Query: 347 AGEIFQIAVVMNALTLVGVAVGFVLLR 427
           A EIF +A VM AL L G++VGF LL+
Sbjct: 2   AKEIFTVAGVMWALVLTGLSVGFGLLK 28



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>P51275:PETM_PORPU Cytochrome b6-f complex subunit 7 - Porphyra purpurea|
          Length = 32

 Score = 30.0 bits (66), Expect = 8.0
 Identities = 13/25 (52%), Positives = 20/25 (80%)
 Frame = +2

Query: 353 EIFQIAVVMNALTLVGVAVGFVLLR 427
           EI + A++ + L LVG+AVGF+LL+
Sbjct: 4   EIVESAILSSVLVLVGLAVGFLLLK 28


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 78,204,977
Number of extensions: 1414777
Number of successful extensions: 3388
Number of sequences better than 10.0: 7
Number of HSP's gapped: 3387
Number of HSP's successfully gapped: 7
Length of query: 221
Length of database: 100,686,439
Length adjustment: 109
Effective length of query: 112
Effective length of database: 70,788,284
Effective search space: 7928287808
Effective search space used: 7928287808
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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