ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf93a05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC104070.3| Homo sapiens BAC clone RP11-279K24 from 4, comple... 46 0.26
2dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.26
3gb|AC079634.3|AC079634 Genomic Sequence for Oryza sativa, Nippon... 46 0.26
4gb|AC140366.2| Mus musculus BAC clone RP24-225H21 from chromosom... 46 0.26
5gb|AC009173.9| Homo sapiens chromosome 16 clone RP11-99H5, compl... 46 0.26
6gb|AC010401.7| Homo sapiens chromosome 16 clone CTD-2135D7, comp... 46 0.26
7gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, comple... 44 1.0
8dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome 44 1.0
9gb|DQ404180.1| Foot-and-mouth disease virus - type O strain UKG/... 42 4.0
10gb|DQ404179.1| Foot-and-mouth disease virus - type O strain UKG/... 42 4.0
11gb|DQ404178.1| Foot-and-mouth disease virus - type O strain UKG/... 42 4.0
12gb|DQ404177.1| Foot-and-mouth disease virus - type O strain UKG/... 42 4.0
13gb|DQ404176.1| Foot-and-mouth disease virus - type O strain UKG/... 42 4.0
14gb|DQ404175.1| Foot-and-mouth disease virus - type O strain UKG/... 42 4.0
15gb|DQ404174.1| Foot-and-mouth disease virus - type O strain UKG/... 42 4.0
16gb|DQ404173.1| Foot-and-mouth disease virus - type O strain UKG/... 42 4.0
17gb|DQ404172.1| Foot-and-mouth disease virus - type O strain UKG/... 42 4.0
18gb|DQ404171.1| Foot-and-mouth disease virus - type O strain UKG/... 42 4.0
19gb|DQ404169.1| Foot-and-mouth disease virus - type O strain UKG/... 42 4.0
20gb|DQ404170.1| Foot-and-mouth disease virus - type O strain UKG/... 42 4.0
21gb|DQ404168.1| Foot-and-mouth disease virus - type O strain UKG/... 42 4.0
22gb|DQ404167.1| Foot-and-mouth disease virus - type O strain UKG/... 42 4.0
23gb|DQ404166.1| Foot-and-mouth disease virus - type O strain UKG/... 42 4.0
24gb|DQ404165.1| Foot-and-mouth disease virus - type O strain UKG/... 42 4.0
25gb|DQ404164.1| Foot-and-mouth disease virus - type O strain UKG/... 42 4.0
26gb|DQ404163.1| Foot-and-mouth disease virus - type O strain UKG/... 42 4.0
27gb|DQ404162.1| Foot-and-mouth disease virus - type O strain UKG/... 42 4.0
28gb|DQ404161.1| Foot-and-mouth disease virus - type O strain UKG/... 42 4.0
29gb|DQ404160.1| Foot-and-mouth disease virus - type O strain UKG/... 42 4.0
30gb|DQ404159.1| Foot-and-mouth disease virus - type O strain UKG/... 42 4.0
31gb|DQ404158.1| Foot-and-mouth disease virus - type O strain UKG/... 42 4.0
32gb|AC184052.2| Mus musculus BAC clone RP23-312K13 from chromosom... 42 4.0
33emb|CR762386.16| Zebrafish DNA sequence from clone CH211-243A15 ... 42 4.0
34gb|AF377945.1| Foot-and-mouth disease virus O/SKR/2000, complete... 42 4.0
35gb|AC167134.5| Mus musculus chromosome 1, clone RP23-59E7, compl... 42 4.0
36gb|AY312589.1|AY312588S2 Foot-and-mouth disease virus O isolate ... 42 4.0
37gb|AY312587.1|AY312586S2 Foot-and-mouth disease virus O isolate ... 42 4.0
38gb|AY333431.1| Foot-and-mouth disease virus O isolate O/NY00, co... 42 4.0
39gb|AC111057.6| Mus musculus chromosome 15, clone RP24-572A2, com... 42 4.0
40gb|AC003087.2| Homo sapiens BAC clone CTB-119H12 from 7, complet... 42 4.0
41gb|AC146050.3| Pan troglodytes BAC clone RP43-72L14 from 7, comp... 42 4.0
42gb|AC162299.6| Mus musculus chromosome 1, clone RP24-320H7, comp... 42 4.0
43gb|DQ117016.1| Fragaria vesca clone CFVCT009 microsatellite sequ... 42 4.0
44gb|AC171128.2| Helobdella robusta clone CH306-1A10, complete seq... 42 4.0
45gb|AC021500.6| Homo sapiens chromosome 8, clone RP11-135K1, comp... 42 4.0
46gb|AC102845.9| Mus musculus chromosome 15, clone RP24-389O7, com... 42 4.0
47emb|AJ539141.1|FOO539141 Foot-and-mouth disease virus O, strain ... 42 4.0
48emb|AJ539140.1|FOO539140 Foot-and-mouth disease virus O, strain ... 42 4.0
49emb|AJ539139.1|FOO539139 Foot-and-mouth disease virus O, strain ... 42 4.0
50emb|AJ539138.1|FOO539138 Foot-and-mouth disease virus O, strain ... 42 4.0
51emb|AJ539137.1|FOO539137 Foot-and-mouth disease virus O, strain ... 42 4.0
52emb|AJ539136.1|FOO539136 Foot-and-mouth disease virus O, strain ... 42 4.0
53emb|AJ633821.1| Foot-and-mouth disease virus polyprotein gene, g... 42 4.0
54gb|AY593836.1| Foot-and-mouth disease virus O isolate ouk2001x i... 42 4.0
55gb|AY593832.1| Foot-and-mouth disease virus O isolate O UK2001-F... 42 4.0
56gb|AY593831.1| Foot-and-mouth disease virus O isolate O UK2001-E... 42 4.0
57gb|AY593824.1| Foot-and-mouth disease virus O isolate o1skr iso8... 42 4.0
58gb|AC107675.13| Mus musculus chromosome 1, clone RP24-471N7, com... 42 4.0
59emb|BX469930.13| Zebrafish DNA sequence from clone CH211-114L13 ... 42 4.0
60gb|AC159206.2| Mus musculus BAC clone RP23-214M19 from chromosom... 42 4.0
61emb|AJ332970.1|HSA332970 Homo sapiens genomic sequence surroundi... 42 4.0
62dbj|AB079061.1| Foot-and-mouth disease virus O genomic RNA, stra... 42 4.0
63gb|AF162442.1|FMDVPOL1 foot-and-mouth disease virus O RNA polyme... 42 4.0
64gb|AF506822.2| Foot-and-mouth disease virus O strain China/1/99(... 42 4.0
65emb|BX511243.3| Mouse DNA sequence from clone RP23-62N18 on chro... 42 4.0
66emb|AL929146.10| Zebrafish DNA sequence from clone CH211-117A23,... 42 4.0
67emb|AL845479.8| Mouse DNA sequence from clone RP23-232N20 on chr... 42 4.0 
>gb|AC104070.3| Homo sapiens BAC clone RP11-279K24 from 4, complete sequence
          Length = 123291
 Score = 46.1 bits (23), Expect = 0.26
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 195   tgtgcgtgtgtattttcatatatgtgt 221
             ||||| |||||||||||||||||||||
Sbjct: 31401 tgtgcatgtgtattttcatatatgtgt 31375
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10
          Length = 22685906

 Score = 46.1 bits (23), Expect = 0.26
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 854     atcttttcccatctttttatcgg 876
               |||||||||||||||||||||||
Sbjct: 9863042 atcttttcccatctttttatcgg 9863020



 Score = 42.1 bits (21), Expect = 4.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 854     atcttttcccatctttttatc 874
               |||||||||||||||||||||
Sbjct: 9863153 atcttttcccatctttttatc 9863133
to top
>gb|AC079634.3|AC079634 Genomic Sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0045C13, from Chromosome 10, complete sequence
          Length = 161250

 Score = 46.1 bits (23), Expect = 0.26
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 854   atcttttcccatctttttatcgg 876
             |||||||||||||||||||||||
Sbjct: 95521 atcttttcccatctttttatcgg 95499



 Score = 42.1 bits (21), Expect = 4.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 854   atcttttcccatctttttatc 874
             |||||||||||||||||||||
Sbjct: 95632 atcttttcccatctttttatc 95612
to top
>gb|AC140366.2| Mus musculus BAC clone RP24-225H21 from chromosome 7, complete sequence
          Length = 145270

 Score = 46.1 bits (23), Expect = 0.26
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 851   aacatcttttcccatctttttat 873
             |||||||||||||||||||||||
Sbjct: 34953 aacatcttttcccatctttttat 34975
to top
>gb|AC009173.9| Homo sapiens chromosome 16 clone RP11-99H5, complete sequence
          Length = 149842

 Score = 46.1 bits (23), Expect = 0.26
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 851    aacatcttttcccatctttttat 873
              |||||||||||||||||||||||
Sbjct: 135321 aacatcttttcccatctttttat 135343
to top
>gb|AC010401.7| Homo sapiens chromosome 16 clone CTD-2135D7, complete sequence
          Length = 119154

 Score = 46.1 bits (23), Expect = 0.26
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 851   aacatcttttcccatctttttat 873
             |||||||||||||||||||||||
Sbjct: 68260 aacatcttttcccatctttttat 68238
to top
>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence
          Length = 6365727

 Score = 44.1 bits (22), Expect = 1.0
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 699    ggtgaatgtggggaggacgggg 720
              ||||||||||||||||||||||
Sbjct: 402526 ggtgaatgtggggaggacgggg 402547
to top
>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome
          Length = 6413771

 Score = 44.1 bits (22), Expect = 1.0
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 699     ggtgaatgtggggaggacgggg 720
               ||||||||||||||||||||||
Sbjct: 2067169 ggtgaatgtggggaggacgggg 2067148
to top
>gb|DQ404180.1| Foot-and-mouth disease virus - type O strain UKG/11/2001, complete
            genome
          Length = 8193

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 769  cggcaggcccaaattcggggt 789
            |||||||||||||||||||||
Sbjct: 6789 cggcaggcccaaattcggggt 6769
to top
>gb|DQ404179.1| Foot-and-mouth disease virus - type O strain UKG/126/2001, complete
            genome
          Length = 8193

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 769  cggcaggcccaaattcggggt 789
            |||||||||||||||||||||
Sbjct: 6789 cggcaggcccaaattcggggt 6769
to top
>gb|DQ404178.1| Foot-and-mouth disease virus - type O strain UKG/127/2001, complete
            genome
          Length = 8193

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 769  cggcaggcccaaattcggggt 789
            |||||||||||||||||||||
Sbjct: 6789 cggcaggcccaaattcggggt 6769
to top
>gb|DQ404177.1| Foot-and-mouth disease virus - type O strain UKG/128/2001, complete
            genome
          Length = 8193

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 769  cggcaggcccaaattcggggt 789
            |||||||||||||||||||||
Sbjct: 6789 cggcaggcccaaattcggggt 6769
to top
>gb|DQ404176.1| Foot-and-mouth disease virus - type O strain UKG/150/2001, complete
            genome
          Length = 8193

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 769  cggcaggcccaaattcggggt 789
            |||||||||||||||||||||
Sbjct: 6789 cggcaggcccaaattcggggt 6769
to top
>gb|DQ404175.1| Foot-and-mouth disease virus - type O strain UKG/173/2001, complete
            genome
          Length = 8193

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 769  cggcaggcccaaattcggggt 789
            |||||||||||||||||||||
Sbjct: 6789 cggcaggcccaaattcggggt 6769
to top
>gb|DQ404174.1| Foot-and-mouth disease virus - type O strain UKG/438/2001, complete
            genome
          Length = 8193

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 769  cggcaggcccaaattcggggt 789
            |||||||||||||||||||||
Sbjct: 6789 cggcaggcccaaattcggggt 6769
to top
>gb|DQ404173.1| Foot-and-mouth disease virus - type O strain UKG/220/2001, complete
            genome
          Length = 8195

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 769  cggcaggcccaaattcggggt 789
            |||||||||||||||||||||
Sbjct: 6789 cggcaggcccaaattcggggt 6769
to top
>gb|DQ404172.1| Foot-and-mouth disease virus - type O strain UKG/621/2001, complete
            genome
          Length = 8193

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 769  cggcaggcccaaattcggggt 789
            |||||||||||||||||||||
Sbjct: 6789 cggcaggcccaaattcggggt 6769
to top
>gb|DQ404171.1| Foot-and-mouth disease virus - type O strain UKG/4569/2001, complete
            genome
          Length = 8193

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 769  cggcaggcccaaattcggggt 789
            |||||||||||||||||||||
Sbjct: 6789 cggcaggcccaaattcggggt 6769
to top
>gb|DQ404169.1| Foot-and-mouth disease virus - type O strain UKG/7038/2001, complete
            genome
          Length = 8193

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 769  cggcaggcccaaattcggggt 789
            |||||||||||||||||||||
Sbjct: 6789 cggcaggcccaaattcggggt 6769
to top
>gb|DQ404170.1| Foot-and-mouth disease virus - type O strain UKG/7675/2001, complete
            genome
          Length = 8193

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 769  cggcaggcccaaattcggggt 789
            |||||||||||||||||||||
Sbjct: 6789 cggcaggcccaaattcggggt 6769
to top
>gb|DQ404168.1| Foot-and-mouth disease virus - type O strain UKG/9011/2001, complete
            genome
          Length = 8193

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 769  cggcaggcccaaattcggggt 789
            |||||||||||||||||||||
Sbjct: 6789 cggcaggcccaaattcggggt 6769
to top
>gb|DQ404167.1| Foot-and-mouth disease virus - type O strain UKG/9327/2001, complete
            genome
          Length = 8188

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 769  cggcaggcccaaattcggggt 789
            |||||||||||||||||||||
Sbjct: 6789 cggcaggcccaaattcggggt 6769
to top
>gb|DQ404166.1| Foot-and-mouth disease virus - type O strain UKG/9788/2001, complete
            genome
          Length = 8193

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 769  cggcaggcccaaattcggggt 789
            |||||||||||||||||||||
Sbjct: 6789 cggcaggcccaaattcggggt 6769
to top
>gb|DQ404165.1| Foot-and-mouth disease virus - type O strain UKG/9964/2001, complete
            genome
          Length = 8193

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 769  cggcaggcccaaattcggggt 789
            |||||||||||||||||||||
Sbjct: 6789 cggcaggcccaaattcggggt 6769
to top
>gb|DQ404164.1| Foot-and-mouth disease virus - type O strain UKG/11676/2001, complete
            genome
          Length = 8193

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 769  cggcaggcccaaattcggggt 789
            |||||||||||||||||||||
Sbjct: 6789 cggcaggcccaaattcggggt 6769
to top
>gb|DQ404163.1| Foot-and-mouth disease virus - type O strain UKG/14339/2001, complete
            genome
          Length = 8191

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 769  cggcaggcccaaattcggggt 789
            |||||||||||||||||||||
Sbjct: 6787 cggcaggcccaaattcggggt 6767
to top
>gb|DQ404162.1| Foot-and-mouth disease virus - type O strain UKG/14476/2001, complete
            genome
          Length = 8192

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 769  cggcaggcccaaattcggggt 789
            |||||||||||||||||||||
Sbjct: 6787 cggcaggcccaaattcggggt 6767
to top
>gb|DQ404161.1| Foot-and-mouth disease virus - type O strain UKG/14391/2001, complete
            genome
          Length = 8189

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 769  cggcaggcccaaattcggggt 789
            |||||||||||||||||||||
Sbjct: 6785 cggcaggcccaaattcggggt 6765
to top
>gb|DQ404160.1| Foot-and-mouth disease virus - type O strain UKG/14524/2001, complete
            genome
          Length = 8187

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 769  cggcaggcccaaattcggggt 789
            |||||||||||||||||||||
Sbjct: 6783 cggcaggcccaaattcggggt 6763
to top
>gb|DQ404159.1| Foot-and-mouth disease virus - type O strain UKG/14603/2001, complete
            genome
          Length = 8188

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 769  cggcaggcccaaattcggggt 789
            |||||||||||||||||||||
Sbjct: 6783 cggcaggcccaaattcggggt 6763
to top
>gb|DQ404158.1| Foot-and-mouth disease virus - type O strain UKG/15101/2001, complete
            genome
          Length = 8187

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 769  cggcaggcccaaattcggggt 789
            |||||||||||||||||||||
Sbjct: 6783 cggcaggcccaaattcggggt 6763
to top
>gb|AC184052.2| Mus musculus BAC clone RP23-312K13 from chromosome 7, complete sequence
          Length = 207860

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 204    gtattttcatatatgtgtgtt 224
              |||||||||||||||||||||
Sbjct: 179668 gtattttcatatatgtgtgtt 179648
to top
>emb|CR762386.16| Zebrafish DNA sequence from clone CH211-243A15 in linkage group 2,
              complete sequence
          Length = 160796

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 195    tgtgcgtgtgtattttcatatatgt 219
              ||||| |||||||||||||||||||
Sbjct: 147056 tgtgcctgtgtattttcatatatgt 147080
to top
>gb|AF377945.1| Foot-and-mouth disease virus O/SKR/2000, complete genome
          Length = 7813

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 769  cggcaggcccaaattcggggt 789
            |||||||||||||||||||||
Sbjct: 6410 cggcaggcccaaattcggggt 6390
to top
>gb|AC167134.5| Mus musculus chromosome 1, clone RP23-59E7, complete sequence
          Length = 140039

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 195   tgtgcgtgtgtattttcatatatgtgtgt 223
             |||| |||||||||| |||||||||||||
Sbjct: 24541 tgtgtgtgtgtatttgcatatatgtgtgt 24513
to top
>gb|AY312589.1|AY312588S2 Foot-and-mouth disease virus O isolate O/SKR/2002 L fragment,
            complete sequence
          Length = 7803

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 769  cggcaggcccaaattcggggt 789
            |||||||||||||||||||||
Sbjct: 6410 cggcaggcccaaattcggggt 6390
to top
>gb|AY312587.1|AY312586S2 Foot-and-mouth disease virus O isolate O/SKR/2000 L fragment,
            complete sequence
          Length = 7799

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 769  cggcaggcccaaattcggggt 789
            |||||||||||||||||||||
Sbjct: 6408 cggcaggcccaaattcggggt 6388
to top
>gb|AY333431.1| Foot-and-mouth disease virus O isolate O/NY00, complete genome
          Length = 7731

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 769  cggcaggcccaaattcggggt 789
            |||||||||||||||||||||
Sbjct: 6410 cggcaggcccaaattcggggt 6390
to top
>gb|AC111057.6| Mus musculus chromosome 15, clone RP24-572A2, complete sequence
          Length = 127727

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 203   tgtattttcatatatgtgtgt 223
             |||||||||||||||||||||
Sbjct: 14698 tgtattttcatatatgtgtgt 14718
to top
>gb|AC003087.2| Homo sapiens BAC clone CTB-119H12 from 7, complete sequence
          Length = 103566

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 851   aacatcttttcccatcttttt 871
             |||||||||||||||||||||
Sbjct: 33069 aacatcttttcccatcttttt 33089
to top
>gb|AC146050.3| Pan troglodytes BAC clone RP43-72L14 from 7, complete sequence
          Length = 154653

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 851   aacatcttttcccatcttttt 871
             |||||||||||||||||||||
Sbjct: 68237 aacatcttttcccatcttttt 68257
to top
>gb|AC162299.6| Mus musculus chromosome 1, clone RP24-320H7, complete sequence
          Length = 130226

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 195    tgtgcgtgtgtattttcatatatgtgtgt 223
              |||| |||||||||| |||||||||||||
Sbjct: 128647 tgtgtgtgtgtatttgcatatatgtgtgt 128619
to top
>gb|DQ117016.1| Fragaria vesca clone CFVCT009 microsatellite sequence
          Length = 628

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 279 attagccgacgaaaaaatgat 299
           |||||||||||||||||||||
Sbjct: 43  attagccgacgaaaaaatgat 63
to top
>gb|AC171128.2| Helobdella robusta clone CH306-1A10, complete sequence
          Length = 76716

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 195   tgtgcgtgtgtattttcatatatgt 219
             |||| ||||||||||||||||||||
Sbjct: 69817 tgtgtgtgtgtattttcatatatgt 69793
to top
>gb|AC021500.6| Homo sapiens chromosome 8, clone RP11-135K1, complete sequence
          Length = 160348

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 852   acatcttttcccatcttttta 872
             |||||||||||||||||||||
Sbjct: 86077 acatcttttcccatcttttta 86057
to top
>gb|AC102845.9| Mus musculus chromosome 15, clone RP24-389O7, complete sequence
          Length = 125424

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 203  tgtattttcatatatgtgtgt 223
            |||||||||||||||||||||
Sbjct: 1743 tgtattttcatatatgtgtgt 1723
to top
>emb|AJ539141.1|FOO539141 Foot-and-mouth disease virus O, strain UKG/35/2001, complete genome
          Length = 8183

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 769  cggcaggcccaaattcggggt 789
            |||||||||||||||||||||
Sbjct: 6789 cggcaggcccaaattcggggt 6769
to top
>emb|AJ539140.1|FOO539140 Foot-and-mouth disease virus O, strain SAR/19/2000, complete genome
          Length = 8184

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 769  cggcaggcccaaattcggggt 789
            |||||||||||||||||||||
Sbjct: 6789 cggcaggcccaaattcggggt 6769
to top
>emb|AJ539139.1|FOO539139 Foot-and-mouth disease virus O, strain SKR/2000, complete genome
          Length = 8182

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 769  cggcaggcccaaattcggggt 789
            |||||||||||||||||||||
Sbjct: 6788 cggcaggcccaaattcggggt 6768
to top
>emb|AJ539138.1|FOO539138 Foot-and-mouth disease virus O, strain Tibet/CHA/99, complete genome
          Length = 8183

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 769  cggcaggcccaaattcggggt 789
            |||||||||||||||||||||
Sbjct: 6789 cggcaggcccaaattcggggt 6769
to top
>emb|AJ539137.1|FOO539137 Foot-and-mouth disease virus O, strain TAW/2/99 BOV, complete genome
          Length = 8183

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 769  cggcaggcccaaattcggggt 789
            |||||||||||||||||||||
Sbjct: 6789 cggcaggcccaaattcggggt 6769
to top
>emb|AJ539136.1|FOO539136 Foot-and-mouth disease virus O, strain TAW/2/99 TC, complete genome
          Length = 8183

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 769  cggcaggcccaaattcggggt 789
            |||||||||||||||||||||
Sbjct: 6789 cggcaggcccaaattcggggt 6769
to top
>emb|AJ633821.1| Foot-and-mouth disease virus polyprotein gene, genomic RNA, serotype
            O, isolate FRA/1/2001, complete genome
          Length = 8234

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 769  cggcaggcccaaattcggggt 789
            |||||||||||||||||||||
Sbjct: 6792 cggcaggcccaaattcggggt 6772
to top
>gb|AY593836.1| Foot-and-mouth disease virus O isolate ouk2001x iso84, complete
            genome
          Length = 8199

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 769  cggcaggcccaaattcggggt 789
            |||||||||||||||||||||
Sbjct: 6790 cggcaggcccaaattcggggt 6770
to top
>gb|AY593832.1| Foot-and-mouth disease virus O isolate O UK2001-FB, complete genome
          Length = 8200

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 769  cggcaggcccaaattcggggt 789
            |||||||||||||||||||||
Sbjct: 6791 cggcaggcccaaattcggggt 6771
to top
>gb|AY593831.1| Foot-and-mouth disease virus O isolate O UK2001-ED, complete genome
          Length = 8200

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 769  cggcaggcccaaattcggggt 789
            |||||||||||||||||||||
Sbjct: 6791 cggcaggcccaaattcggggt 6771
to top
>gb|AY593824.1| Foot-and-mouth disease virus O isolate o1skr iso85, complete genome
          Length = 8199

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 769  cggcaggcccaaattcggggt 789
            |||||||||||||||||||||
Sbjct: 6790 cggcaggcccaaattcggggt 6770
to top
>gb|AC107675.13| Mus musculus chromosome 1, clone RP24-471N7, complete sequence
          Length = 127374

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 195   tgtgcgtgtgtattttcatatatgtgtgt 223
             |||| |||||||||| |||||||||||||
Sbjct: 55718 tgtgtgtgtgtatttgcatatatgtgtgt 55746
to top
>emb|BX469930.13| Zebrafish DNA sequence from clone CH211-114L13 in linkage group 1,
             complete sequence
          Length = 183380

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 188   ttgcgtttgtgcgtgtgtatt 208
             |||||||||||||||||||||
Sbjct: 57528 ttgcgtttgtgcgtgtgtatt 57508
to top
>gb|AC159206.2| Mus musculus BAC clone RP23-214M19 from chromosome 7, complete sequence
          Length = 224088

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 204   gtattttcatatatgtgtgtt 224
             |||||||||||||||||||||
Sbjct: 66519 gtattttcatatatgtgtgtt 66499
to top
>emb|AJ332970.1|HSA332970 Homo sapiens genomic sequence surrounding NotI site, clone
           NL6-DO14RS
          Length = 742

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 847 gaacaacatcttttcccatct 867
           |||||||||||||||||||||
Sbjct: 676 gaacaacatcttttcccatct 696
to top
>dbj|AB079061.1| Foot-and-mouth disease virus O genomic RNA, strain:O/JPN/2000,
            L-fragment
          Length = 7822

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 769  cggcaggcccaaattcggggt 789
            |||||||||||||||||||||
Sbjct: 6411 cggcaggcccaaattcggggt 6391
to top
>gb|AF162442.1|FMDVPOL1 foot-and-mouth disease virus O RNA polymerase (3D) gene, partial
           cds
          Length = 455

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 769 cggcaggcccaaattcggggt 789
           |||||||||||||||||||||
Sbjct: 389 cggcaggcccaaattcggggt 409
to top
>gb|AF506822.2| Foot-and-mouth disease virus O strain China/1/99(Tibet), complete
            genome
          Length = 8173

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 769  cggcaggcccaaattcggggt 789
            |||||||||||||||||||||
Sbjct: 6779 cggcaggcccaaattcggggt 6759
to top
>emb|BX511243.3| Mouse DNA sequence from clone RP23-62N18 on chromosome 2, complete
            sequence
          Length = 58979

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 699  ggtgaatgtggggaggacggggttg 723
            ||||| |||||||||||||||||||
Sbjct: 2116 ggtgactgtggggaggacggggttg 2092
to top
>emb|AL929146.10| Zebrafish DNA sequence from clone CH211-117A23, complete sequence
          Length = 169102

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 195   tgtgcgtgtgtattttcatatatgt 219
             ||||| |||||||||||||||||||
Sbjct: 60261 tgtgcctgtgtattttcatatatgt 60237
to top
>emb|AL845479.8| Mouse DNA sequence from clone RP23-232N20 on chromosome 2, complete
             sequence
          Length = 102283

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 203   tgtattttcatatatgtgtgt 223
             |||||||||||||||||||||
Sbjct: 12021 tgtattttcatatatgtgtgt 12001


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 164,103,773
Number of extensions: 8261630
Number of successful extensions: 147765
Number of sequences better than 10.0: 67
Number of HSP's gapped: 147765
Number of HSP's successfully gapped: 69
Length of query: 1054
Length of database: 18,610,659,111
Length adjustment: 23
Effective length of query: 1031
Effective length of database: 18,503,978,556
Effective search space: 19077601891236
Effective search space used: 19077601891236
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
to top