ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf89l13 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001073645.1| Oryza sativa (japonica cultivar-group) Os12g0577100 (Os12g0577100) mRNA, complete cds Length = 1599 Score = 529 bits (267), Expect = e-146 Identities = 751/911 (82%), Gaps = 6/911 (0%) Strand = Plus / Minus Query: 523 gctgccgcacgtgtactccgcattggttccagaacagattttatgcttggtggtattttg 582 ||||| ||||| ||||| || ||||||||||||||||||||| |||||||||| ||| Sbjct: 1588 gctgcagcacgcgtacttcgtattggttccagaacagattttctgcttggtgga---ttg 1532 Query: 583 catccagcaataaattggactgagagggaatctaatgtggatgctgatgaaatggccaag 642 ||||| ||||||||||| |||||| ||| ||| |||| |||| || |||||||||||| Sbjct: 1531 catccttcaataaattgggctgagaaggagtctcatgtagatgaggacgaaatggccaag 1472 Query: 643 attaggactgcctttgttggtaatctgccagcaaatgccaatgaggattatctgaaaaag 702 ||| ||| || || ||||| ||| | |||||||||| | ||||| ||| | | |||| Sbjct: 1471 gttaagacagctttcgttggaaatttaccagcaaatgttacagaggagtatttaagaaag 1412 Query: 703 ctttttggacgttttggagaggtaattcgggttgcagtctcaagaaaaggacaataccca 762 ||||||| || || |||||||||| | ||||||||||||||||| ||||||||||| ||| Sbjct: 1411 ctttttgaacattgtggagaggtagtacgggttgcagtctcaaggaaaggacaatatcca 1352 Query: 763 gttggattcattcactttggcagtcgttcagagcttgacaatgcaataaaagaaatggat 822 |||||||| | ||||||| ||||||| ||||||| |||||||||||||||||||||||| Sbjct: 1351 gttggatttgtccactttgccagtcgtacagagctcgacaatgcaataaaagaaatggat 1292 Query: 823 ggtaaaactgtcagcggacctaaccgaggaccatctttcaagatccaggtttcagttgct 882 ||| |||| || || |||||| ||||||| || |||||| ||||||||| ||||||||| Sbjct: 1291 ggtgaaacagtgagaggacctgaccgaggggcaactttcaggatccaggtctcagttgct 1232 Query: 883 cgacccgcagtagagaacgataataagagaagccgtgaagaggtgaaaactagaagatca 942 || || | |||||||||||||| ||||||| |||||||| |||||||||||||||||| Sbjct: 1231 cggcctgtggtagagaacgataaaaagagaattcgtgaagaagtgaaaactagaagatca 1172 Query: 943 aatgtatcaggaggcaagccagattattctcatggcagatacggacatgattcgcttgat 1002 || |||||| || |||||| || ||||| |||| ||| ||||||||||| |||| Sbjct: 1171 aacgtatcaacagacaagccggaccattcttatggaagacgtggacatgattcatatgat 1112 Query: 1003 cgtcaaacgaaagctccgagactatcaaacatggtggctgatgtcaccgacccctatgaa 1062 |||||| | |||||||| || |||| || |||| ||||| || |||||||||||| Sbjct: 1111 cgtcaagcaaaagctccaaggctatataatgaggtgtctgat---acggacccctatgaa 1055 Query: 1063 gcagctattaattcactaccttcggccgtcaacgaactcttacttcgtattttacgtctt 1122 |||||| || |||||||||||| |||||||| |||||| ||||||||||| |||||||| Sbjct: 1054 gcagctgttgtttcactaccttcagccgtcaaggaactcctacttcgtattctacgtctt 995 Query: 1123 ggaattggcagtccatacgacattgacatccattgcataaagagcctcaatgaactccct 1182 ||||||||| || ||| || || ||||| |||||||||| ||| || |||||||| ||| Sbjct: 994 agaattggcactcgatatgatatagacattcattgcataaggagtcttaatgaacttcct 935 Query: 1183 gagtcaggtgctgttgccgtccttaatcagtttttgattacaggttctgacaaacgcaat 1242 || | ||| ||||| |||||||||||||||||||| ||||| | || |||| |||| Sbjct: 934 gaaaaggctgcagttgctgtccttaatcagtttttgatatcaggtgcagataaacacaat 875 Query: 1243 aaaggagaatatttcctttcattaattgctaagcgcaaggttgaggcttttggcgcagca 1302 |||||||| |||||| |||||||||||||||| | ||| |||| | ||| || ||||| Sbjct: 874 aaaggagactatttcgcttcattaattgctaagtaccaggctgagacatttagctcagca 815 Query: 1303 caaatattacaggatactacttctttgtccagaaattctgaaatgcaaaccaagcgatac 1362 | || ||| |||| | |||||| |||| | |||||| ||||||| || | |||| ||| | Sbjct: 814 ctaagattgcagggttctacttatttgccaagaaatcctgaaatacagaacaagagattc 755 Query: 1363 cgacatcaagattacgattacacagcatccgggggcagtagatacagctccctaggcggt 1422 | ||||||||||||||| ||||||||||||||| | ||||||||||| ||| |||| | | Sbjct: 754 ccacatcaagattacgagtacacagcatccgggagtagtagatacagttccttaggtgat 695 Query: 1423 tatccctcctc 1433 ||||| ||||| Sbjct: 694 tatccttcctc 684 Score = 99.6 bits (50), Expect = 5e-17 Identities = 140/170 (82%) Strand = Plus / Minus Query: 1977 cacaaacatagaaccagaattcaagtccaggtcctctgctgaatattctgctgaacagca 2036 ||||||||||| |||||||||| |||||||| ||||||||||| ||| ||| | || Sbjct: 404 cacaaacatagtcccagaattcagctccaggtcatctgctgaatactctactgctcgcca 345 Query: 2037 gcaaatgaggtttgatccctacacaggagagccttacaagttcgaccccttcactgggga 2096 ||| | ||||||||||| | |||||| || || |||||||| || |||| ||| || || Sbjct: 344 acaagtaaggtttgatccattcacaggggaaccatacaagtttgatccctacaccggtga 285 Query: 2097 gcccatcaggccagaaccaagcctgcgtcgctcaggaagcttatactgac 2146 ||||||||||||||| | | || ||||||||||||||||||||||||| Sbjct: 284 acccatcaggccagaatcgaacccacgtcgctcaggaagcttatactgac 235 Score = 48.1 bits (24), Expect = 0.16 Identities = 36/40 (90%) Strand = Plus / Minus Query: 1612 gcacatgaacccaggcaggatacaggaaggcatctagatc 1651 ||||||||||| || |||||||| ||||||||||| |||| Sbjct: 541 gcacatgaaccaagacaggatactggaaggcatctcgatc 502
>dbj|AK059444.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-028-A03, full insert sequence Length = 1599 Score = 521 bits (263), Expect = e-144 Identities = 750/911 (82%), Gaps = 6/911 (0%) Strand = Plus / Plus Query: 523 gctgccgcacgtgtactccgcattggttccagaacagattttatgcttggtggtattttg 582 ||||| ||||| ||||| || ||||||||||||||||||||| |||||||||| ||| Sbjct: 12 gctgcagcacgcgtacttcgtattggttccagaacagattttctgcttggtgga---ttg 68 Query: 583 catccagcaataaattggactgagagggaatctaatgtggatgctgatgaaatggccaag 642 ||||| ||||||||||| |||||| ||| ||| |||| |||| || |||||||||||| Sbjct: 69 catccttcaataaattgggctgagaaggagtctcatgtagatgaggacgaaatggccaag 128 Query: 643 attaggactgcctttgttggtaatctgccagcaaatgccaatgaggattatctgaaaaag 702 ||| ||| || || ||||| ||| | |||||||||| | ||||| ||| | | |||| Sbjct: 129 gttaagacagctttcgttggaaatttaccagcaaatgttacagaggagtatttaagaaag 188 Query: 703 ctttttggacgttttggagaggtaattcgggttgcagtctcaagaaaaggacaataccca 762 ||||||| || || |||||||||| | ||||||||||||||||| ||||||||||| ||| Sbjct: 189 ctttttgaacattgtggagaggtagtacgggttgcagtctcaaggaaaggacaatatcca 248 Query: 763 gttggattcattcactttggcagtcgttcagagcttgacaatgcaataaaagaaatggat 822 |||||||| | ||||||| ||||||| ||||||| |||||||||||||||||||||||| Sbjct: 249 gttggatttgtccactttgccagtcgtacagagctcgacaatgcaataaaagaaatggat 308 Query: 823 ggtaaaactgtcagcggacctaaccgaggaccatctttcaagatccaggtttcagttgct 882 ||| |||| || || |||||| ||||||| || |||||| ||||||||| ||||||||| Sbjct: 309 ggtgaaacagtgagaggacctgaccgaggggcaactttcaggatccaggtctcagttgct 368 Query: 883 cgacccgcagtagagaacgataataagagaagccgtgaagaggtgaaaactagaagatca 942 || || | |||||||||||||| ||||||| |||||||| |||||||||||||||||| Sbjct: 369 cggcctgtggtagagaacgataaaaagagaattcgtgaagaagtgaaaactagaagatca 428 Query: 943 aatgtatcaggaggcaagccagattattctcatggcagatacggacatgattcgcttgat 1002 || |||||| || |||||| || ||||| |||| ||| ||||||||||| |||| Sbjct: 429 aacgtatcaacagacaagccggaccattcttatggaagacgtggacatgattcatatgat 488 Query: 1003 cgtcaaacgaaagctccgagactatcaaacatggtggctgatgtcaccgacccctatgaa 1062 |||||| | |||||||| || |||| || |||| ||||| || |||||||||||| Sbjct: 489 cgtcaagcaaaagctccaaggctatataatgaggtgtctgat---acggacccctatgaa 545 Query: 1063 gcagctattaattcactaccttcggccgtcaacgaactcttacttcgtattttacgtctt 1122 |||||| || |||||||||||| |||||||| |||||| ||||||||||| |||||||| Sbjct: 546 gcagctgttgtttcactaccttcagccgtcaaggaactcctacttcgtattctacgtctt 605 Query: 1123 ggaattggcagtccatacgacattgacatccattgcataaagagcctcaatgaactccct 1182 ||||||||| || ||| || || ||||| |||||||||| ||| || |||||||| ||| Sbjct: 606 agaattggcactcgatatgatatagacattcattgcataaggagtcttaatgaacttcct 665 Query: 1183 gagtcaggtgctgttgccgtccttaatcagtttttgattacaggttctgacaaacgcaat 1242 || | ||| ||||| |||||||||||||||||||| ||||| | || |||| |||| Sbjct: 666 gaaaaggctgcagttgctgtccttaatcagtttttgatatcaggtgcagataaacacaat 725 Query: 1243 aaaggagaatatttcctttcattaattgctaagcgcaaggttgaggcttttggcgcagca 1302 |||||||| |||||| |||||||||||||||| | ||| |||| | ||| || ||||| Sbjct: 726 aaaggagactatttcgcttcattaattgctaagtaccaggctgagacatttagctcagca 785 Query: 1303 caaatattacaggatactacttctttgtccagaaattctgaaatgcaaaccaagcgatac 1362 | || ||| |||| | |||||| |||| | |||||| ||| ||| || | |||| ||| | Sbjct: 786 ctaagattgcagggttctacttatttgccaagaaatcctggaatacagaacaagagattc 845 Query: 1363 cgacatcaagattacgattacacagcatccgggggcagtagatacagctccctaggcggt 1422 | ||||||||||||||| ||||||||||||||| | ||||||||||| ||| |||| | | Sbjct: 846 ccacatcaagattacgagtacacagcatccgggagtagtagatacagttccttaggtgat 905 Query: 1423 tatccctcctc 1433 ||||| ||||| Sbjct: 906 tatccttcctc 916 Score = 99.6 bits (50), Expect = 5e-17 Identities = 140/170 (82%) Strand = Plus / Plus Query: 1977 cacaaacatagaaccagaattcaagtccaggtcctctgctgaatattctgctgaacagca 2036 ||||||||||| |||||||||| |||||||| ||||||||||| ||| ||| | || Sbjct: 1196 cacaaacatagtcccagaattcagctccaggtcatctgctgaatactctactgctcgcca 1255 Query: 2037 gcaaatgaggtttgatccctacacaggagagccttacaagttcgaccccttcactgggga 2096 ||| | ||||||||||| | |||||| || || |||||||| || |||| ||| || || Sbjct: 1256 acaagtaaggtttgatccattcacaggggaaccatacaagtttgatccctacaccggtga 1315 Query: 2097 gcccatcaggccagaaccaagcctgcgtcgctcaggaagcttatactgac 2146 ||||||||||||||| | | || ||||||||||||||||||||||||| Sbjct: 1316 acccatcaggccagaatcgaacccacgtcgctcaggaagcttatactgac 1365 Score = 48.1 bits (24), Expect = 0.16 Identities = 36/40 (90%) Strand = Plus / Plus Query: 1612 gcacatgaacccaggcaggatacaggaaggcatctagatc 1651 ||||||||||| || |||||||| ||||||||||| |||| Sbjct: 1059 gcacatgaaccaagacaggatactggaaggcatctcgatc 1098
>gb|AY105295.1| Zea mays PCO093723 mRNA sequence Length = 1758 Score = 402 bits (203), Expect = e-108 Identities = 695/859 (80%) Strand = Plus / Plus Query: 523 gctgccgcacgtgtactccgcattggttccagaacagattttatgcttggtggtattttg 582 ||||| ||||||||| ||||||| ||||| ||||||||||| |||||||||| ||||||| Sbjct: 338 gctgcagcacgtgtaatccgcatcggttcaagaacagatttcatgcttggtgatattttg 397 Query: 583 catccagcaataaattggactgagagggaatctaatgtggatgctgatgaaatggccaag 642 ||||| || ||||||||| |||| | || ||| || ||||| ||||||||||||||||| Sbjct: 398 catcctgcgataaattgggctgataaagagtctcatctggatcctgatgaaatggccaag 457 Query: 643 attaggactgcctttgttggtaatctgccagcaaatgccaatgaggattatctgaaaaag 702 || | | |||| ||| ||||||| ||||||| | ||| |||||||| || ||| |||| Sbjct: 458 atgaagtctgcttttattggtaacctgccagaagatgttaatgaggagtacttgagaaag 517 Query: 703 ctttttggacgttttggagaggtaattcgggttgcagtctcaagaaaaggacaataccca 762 |||||||||| || || |||||| | |||||||| |||||||||||||||||| ||| Sbjct: 518 ctttttggacagttcggtgaggtagtacgggttgctatctcaagaaaaggacaatgtcca 577 Query: 763 gttggattcattcactttggcagtcgttcagagcttgacaatgcaataaaagaaatggat 822 |||| || ||||||| | || |||||||||||||| ||||| ||| ||||||||||| Sbjct: 578 gttgcttttgttcacttcgccaaacgttcagagcttgagaatgctatagaagaaatggat 637 Query: 823 ggtaaaactgtcagcggacctaaccgaggaccatctttcaagatccaggtttcagttgct 882 |||||||| || || |||||| ||||| || ||||||||||||||||| ||||||||| Sbjct: 638 ggtaaaacggtgagaggacctggtcgagggccgtctttcaagatccaggtgtcagttgct 697 Query: 883 cgacccgcagtagagaacgataataagagaagccgtgaagaggtgaaaactagaagatca 942 ||||| | | ||| ||||| || ||| || |||||||| |||| ||||||||||||| Sbjct: 698 cgacctacggcagacaacgacaagaagcgatctcgtgaagaagtgagaactagaagatca 757 Query: 943 aatgtatcaggaggcaagccagattattctcatggcagatacggacatgattcgcttgat 1002 |||| |||||||| | || ||||||||||||||| ||||| ||||| ||||| |||||| Sbjct: 758 aatgcatcaggagataggcgagattattctcatggaagatatggacacgattcacttgat 817 Query: 1003 cgtcaaacgaaagctccgagactatcaaacatggtggctgatgtcaccgacccctatgaa 1062 |||||| ||||||||| ||| |||| || ||||| |||| | |||||||||||| Sbjct: 818 cgtcaagtgaaagctccaagattatctaattatgtggccgatgctgctgacccctatgaa 877 Query: 1063 gcagctattaattcactaccttcggccgtcaacgaactcttacttcgtattttacgtctt 1122 ||||| |||||||| ||||||| || ||||| ||| |||| ||||| ||| ||||||| Sbjct: 878 tcagctgttaattcattaccttcagctgtcaaggaagtcttgcttcgaattctacgtcta 937 Query: 1123 ggaattggcagtccatacgacattgacatccattgcataaagagcctcaatgaactccct 1182 ||||||| | || ||| || ||||| |||||||| | || ||||| |||| || ||| Sbjct: 938 agaattggtactcgatatgatattgatatccattgtgttaaaagccttgatgagcttcct 997 Query: 1183 gagtcaggtgctgttgccgtccttaatcagtttttgattacaggttctgacaaacgcaat 1242 |||||| |||| |||| |||||||||||||||||||| ||||| ||||||| ||| Sbjct: 998 gagtcatctgctcttgctgtccttaatcagtttttgatatcaggtggagacaaacacaac 1057 Query: 1243 aaaggagaatatttcctttcattaattgctaagcgcaaggttgaggcttttggcgcagca 1302 |||||||| ||||| || || ||||||||| | ||| |||| | |||||| | || Sbjct: 1058 aaaggagattattttgcatcgttggttgctaagcaccaggctgagacctttggcttaaca 1117 Query: 1303 caaatattacaggatactacttctttgtccagaaattctgaaatgcaaaccaagcgatac 1362 || |||||| | ||| |||| |||||| |||||| | |||||||| | |||||||||| Sbjct: 1118 catgcattacacggtaccacttatttgtcaagaaatccggaaatgcatagcaagcgatac 1177 Query: 1363 cgacatcaagattacgatt 1381 | |||| ||||||| |||| Sbjct: 1178 ccacatgaagattatgatt 1196 Score = 89.7 bits (45), Expect = 5e-14 Identities = 87/100 (87%), Gaps = 1/100 (1%) Strand = Plus / Plus Query: 2038 caaatgaggtttgatccctacacaggagagccttacaagttcgaccccttcactggggag 2097 ||||||||||||||||| | |||||| || ||||||||||| | |||||||| |||||| Sbjct: 1589 caaatgaggtttgatccattcacaggtgaaccttacaagtttgnacccttcacaggggag 1648 Query: 2098 cccatcaggccagaacc-aagcctgcgtcgctcaggaagc 2136 |||||||||||||| || || || ||| |||||||||||| Sbjct: 1649 cccatcaggccagatccgaacccagcgccgctcaggaagc 1688
>ref|NM_001073644.1| Oryza sativa (japonica cultivar-group) Os12g0577000 (Os12g0577000) mRNA, complete cds Length = 2943 Score = 307 bits (155), Expect = 1e-79 Identities = 340/401 (84%), Gaps = 3/401 (0%) Strand = Plus / Plus Query: 430 gttgaccttgcaatggctccaaatcttgattcttcaacaagcaaaaggcgtctaaatcga 489 ||||||||||||||||||| ||| | ||| |||||| | ||||| |||||||||||| Sbjct: 1597 gttgaccttgcaatggctcgaaaccatgactcttcagttgggaaaagacgtctaaatcga 1656 Query: 490 ggctttgcgtttgtgcgattttcttctcatggagctgccgcacgtgtactccgcattggt 549 |||||||| |||||||||||||||||||||| |||||| ||||| ||||| || |||||| Sbjct: 1657 ggctttgcatttgtgcgattttcttctcatgcagctgcagcacgcgtacttcgtattggt 1716 Query: 550 tccagaacagattttatgcttggtggtattttgcatccagcaataaattggactgagagg 609 ||||||||||||||| |||||||||| |||||||| ||||||||||| |||||| | Sbjct: 1717 tccagaacagattttctgcttggtgga---ttgcatccttcaataaattgggctgagaag 1773 Query: 610 gaatctaatgtggatgctgatgaaatggccaagattaggactgcctttgttggtaatctg 669 || ||| |||| |||| || |||||||||||| ||| ||| || || ||||| ||| | Sbjct: 1774 gagtctcatgtagatgaggacgaaatggccaaggttaagacagctttcgttggaaattta 1833 Query: 670 ccagcaaatgccaatgaggattatctgaaaaagctttttggacgttttggagaggtaatt 729 |||||||||| | ||||| ||| | | ||||||||||| || || |||||||||| | Sbjct: 1834 ccagcaaatgttacagaggagtatttaagaaagctttttgaacattgtggagaggtagta 1893 Query: 730 cgggttgcagtctcaagaaaaggacaatacccagttggattcattcactttggcagtcgt 789 ||||||||||||||||| ||||||||||| ||||||||||| | ||||||| ||||||| Sbjct: 1894 cgggttgcagtctcaaggaaaggacaatatccagttggatttgtccactttgccagtcgt 1953 Query: 790 tcagagcttgacaatgcaataaaagaaatggatggtaaaac 830 ||||||| ||||||||||||||||||||||||||| |||| Sbjct: 1954 acagagctcgacaatgcaataaaagaaatggatggtgaaac 1994 Score = 297 bits (150), Expect = 1e-76 Identities = 458/560 (81%), Gaps = 3/560 (0%) Strand = Plus / Plus Query: 874 tcagttgctcgacccgcagtagagaacgataataagagaagccgtgaagaggtgaaaact 933 ||||||||||| || | |||||||||||||| ||||||| |||||||| ||||||||| Sbjct: 1999 tcagttgctcggcctgtggtagagaacgataaaaagagaattcgtgaagaagtgaaaact 2058 Query: 934 agaagatcaaatgtatcaggaggcaagccagattattctcatggcagatacggacatgat 993 ||||||||||| |||||| || |||||| || ||||| |||| ||| ||||||||| Sbjct: 2059 agaagatcaaacgtatcaacagacaagccggaccattcttatggaagacgtggacatgat 2118 Query: 994 tcgcttgatcgtcaaacgaaagctccgagactatcaaacatggtggctgatgtcaccgac 1053 || |||||||||| | |||||||| || |||| || |||| ||||| || ||| Sbjct: 2119 tcatatgatcgtcaagcaaaagctccaaggctatataatgaggtgtctgat---acggac 2175 Query: 1054 ccctatgaagcagctattaattcactaccttcggccgtcaacgaactcttacttcgtatt 1113 ||||||||||||||| || |||||||||||| |||||||| |||||| ||||||||||| Sbjct: 2176 ccctatgaagcagctgttgtttcactaccttcagccgtcaaggaactcctacttcgtatt 2235 Query: 1114 ttacgtcttggaattggcagtccatacgacattgacatccattgcataaagagcctcaat 1173 |||||||| ||||||||| || ||| || || ||||| |||||||||| ||| || ||| Sbjct: 2236 ctacgtcttagaattggcactcgatatgatatagacattcattgcataaggagtcttaat 2295 Query: 1174 gaactccctgagtcaggtgctgttgccgtccttaatcagtttttgattacaggttctgac 1233 ||||| ||||| | ||| ||||| |||||||||||||||||||| ||||| | || Sbjct: 2296 gaacttcctgaaaaggctgcagttgctgtccttaatcagtttttgatatcaggtgcagat 2355 Query: 1234 aaacgcaataaaggagaatatttcctttcattaattgctaagcgcaaggttgaggctttt 1293 |||| |||||||||||| |||||| |||||||||||||||| | ||| |||| | ||| Sbjct: 2356 aaacacaataaaggagactatttcgcttcattaattgctaagtaccaggctgagacattt 2415 Query: 1294 ggcgcagcacaaatattacaggatactacttctttgtccagaaattctgaaatgcaaacc 1353 || |||||| || ||| |||| | |||||| |||| | |||||| ||||||| || | | Sbjct: 2416 agctcagcactaagattgcagggttctacttatttgccaagaaatcctgaaatacagaac 2475 Query: 1354 aagcgataccgacatcaagattacgattacacagcatccgggggcagtagatacagctcc 1413 ||| ||| || ||||||||||||||| ||||||||||||||| | ||||||||||| ||| Sbjct: 2476 aagagattcccacatcaagattacgagtacacagcatccgggagtagtagatacagttcc 2535 Query: 1414 ctaggcggttatccctcctc 1433 |||| | |||||| ||||| Sbjct: 2536 ttaggtgattatccttcctc 2555 Score = 163 bits (82), Expect = 4e-36 Identities = 112/122 (91%) Strand = Plus / Plus Query: 94 gtgaaaggcgccgaggtgttcgtcggcgggttgccgcggtcggcgacggaggggacgctc 153 ||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||| Sbjct: 1213 gtgaaaggcgccgaggtgttcgtcggcgggttgccgcggtcggtgacggagcgggcgctc 1272 Query: 154 cgagagatattttctacctgtggtgagattgttgacttgcgcataatgaaggatcagaat 213 |||||| |||||||| | ||||| ||||||||||| ||||| |||||||| ||||||||| Sbjct: 1273 cgagaggtattttctccttgtggagagattgttgatttgcggataatgaaagatcagaat 1332 Query: 214 gg 215 || Sbjct: 1333 gg 1334 Score = 127 bits (64), Expect = 2e-25 Identities = 97/108 (89%) Strand = Plus / Plus Query: 296 agcttcaaggaaagcgactagctgttgatctttcattggatcaagacacactcttctttg 355 |||||||||||||| |||| |||||||||||||| ||||||||||| ||||||||||||| Sbjct: 1343 agcttcaaggaaagagacttgctgttgatctttcgttggatcaagatacactcttctttg 1402 Query: 356 gaaatctttgcaaagaatggagtgctgaagaatttgaagaattgattc 403 | |||||||||||||| ||| | |||||||||||||||||||||| Sbjct: 1403 ggaatctttgcaaagactggggcatcgaagaatttgaagaattgattc 1450 Score = 97.6 bits (49), Expect = 2e-16 Identities = 139/169 (82%) Strand = Plus / Plus Query: 1977 cacaaacatagaaccagaattcaagtccaggtcctctgctgaatattctgctgaacagca 2036 ||||||||||| |||||||||| |||||||| ||||||||||| ||| ||| | || Sbjct: 2775 cacaaacatagtcccagaattcagctccaggtcatctgctgaatactctactgctcgcca 2834 Query: 2037 gcaaatgaggtttgatccctacacaggagagccttacaagttcgaccccttcactgggga 2096 ||| | ||||||||||| | |||||| || || |||||||| || |||| ||| || || Sbjct: 2835 acaagtaaggtttgatccattcacaggggaaccatacaagtttgatccctacaccggtga 2894 Query: 2097 gcccatcaggccagaaccaagcctgcgtcgctcaggaagcttatactga 2145 ||||||||||||||| | | || |||||||||||||||||||||||| Sbjct: 2895 acccatcaggccagaatcgaacccacgtcgctcaggaagcttatactga 2943 Score = 48.1 bits (24), Expect = 0.16 Identities = 36/40 (90%) Strand = Plus / Plus Query: 1612 gcacatgaacccaggcaggatacaggaaggcatctagatc 1651 ||||||||||| || |||||||| ||||||||||| |||| Sbjct: 2698 gcacatgaaccaagacaggatactggaaggcatctcgatc 2737
>gb|BT017451.1| Zea mays clone EL01N0406E12.c mRNA sequence Length = 1125 Score = 117 bits (59), Expect = 2e-22 Identities = 263/331 (79%) Strand = Plus / Plus Query: 1051 gacccctatgaagcagctattaattcactaccttcggccgtcaacgaactcttacttcgt 1110 |||||||||||| ||||| |||||||| ||||||| || ||||| ||| |||| ||||| Sbjct: 26 gacccctatgaatcagctgttaattcattaccttcagctgtcaaggaagtcttgcttcga 85 Query: 1111 attttacgtcttggaattggcagtccatacgacattgacatccattgcataaagagcctc 1170 ||| ||||||| ||||||| | || ||| || ||||| |||||||| | || ||||| Sbjct: 86 attctacgtctaagaattggtactcgatatgatattgatatccattgtgttaaaagcctt 145 Query: 1171 aatgaactccctgagtcaggtgctgttgccgtccttaatcagtttttgattacaggttct 1230 |||| || ||||||||| |||| |||| |||||||||||||||||||| ||||| Sbjct: 146 gatgagcttcctgagtcatctgctcttgctgtccttaatcagtttttgatatcaggtgga 205 Query: 1231 gacaaacgcaataaaggagaatatttcctttcattaattgctaagcgcaaggttgaggct 1290 ||||||| ||| |||||||| ||||| || || ||||||||| | ||| |||| | Sbjct: 206 gacaaacacaacaaaggagattattttgcatcgttggttgctaagcaccaggctgagacc 265 Query: 1291 tttggcgcagcacaaatattacaggatactacttctttgtccagaaattctgaaatgcaa 1350 |||||| | |||| |||||| | ||| |||| |||||| |||||| | |||||||| Sbjct: 266 tttggcttaacacatgcattacacggtaccacttatttgtcaagaaatccggaaatgcat 325 Query: 1351 accaagcgataccgacatcaagattacgatt 1381 | ||||||||||| |||| ||||||| |||| Sbjct: 326 agcaagcgatacccacatgaagattatgatt 356 Score = 103 bits (52), Expect = 3e-18 Identities = 94/108 (87%) Strand = Plus / Plus Query: 2038 caaatgaggtttgatccctacacaggagagccttacaagttcgaccccttcactggggag 2097 ||||||||||||||||| | |||||| || ||||||||||| || |||||||| |||||| Sbjct: 749 caaatgaggtttgatccattcacaggtgaaccttacaagtttgatcccttcacaggggag 808 Query: 2098 cccatcaggccagaaccaagcctgcgtcgctcaggaagcttatactga 2145 |||||||||||||| || | || ||| |||||||||||| | |||||| Sbjct: 809 cccatcaggccagatccgaaccagcgccgctcaggaagcctgtactga 856
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12 Length = 27566993 Score = 109 bits (55), Expect = 5e-20 Identities = 70/75 (93%) Strand = Plus / Plus Query: 296 agcttcaaggaaagcgactagctgttgatctttcattggatcaagacacactcttctttg 355 |||||||||||||| |||| |||||||||||||| ||||||||||| ||||||||||||| Sbjct: 23871025 agcttcaaggaaagagacttgctgttgatctttcgttggatcaagatacactcttctttg 23871084 Query: 356 gaaatctttgcaaag 370 | ||||||||||||| Sbjct: 23871085 ggaatctttgcaaag 23871099 Score = 107 bits (54), Expect = 2e-19 Identities = 63/66 (95%) Strand = Plus / Plus Query: 94 gtgaaaggcgccgaggtgttcgtcggcgggttgccgcggtcggcgacggaggggacgctc 153 ||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||| Sbjct: 23869220 gtgaaaggcgccgaggtgttcgtcggcgggttgccgcggtcggtgacggagcgggcgctc 23869279 Query: 154 cgagag 159 |||||| Sbjct: 23869280 cgagag 23869285 Score = 99.6 bits (50), Expect = 5e-17 Identities = 74/82 (90%) Strand = Plus / Plus Query: 1051 gacccctatgaagcagctattaattcactaccttcggccgtcaacgaactcttacttcgt 1110 |||||||||||||||||| || |||||||||||| |||||||| |||||| |||||||| Sbjct: 23877392 gacccctatgaagcagctgttgtttcactaccttcagccgtcaaggaactcctacttcgt 23877451 Query: 1111 attttacgtcttggaattggca 1132 ||| |||||||| ||||||||| Sbjct: 23877452 attctacgtcttagaattggca 23877473 Score = 99.6 bits (50), Expect = 5e-17 Identities = 140/170 (82%) Strand = Plus / Plus Query: 1977 cacaaacatagaaccagaattcaagtccaggtcctctgctgaatattctgctgaacagca 2036 ||||||||||| |||||||||| |||||||| ||||||||||| ||| ||| | || Sbjct: 23878442 cacaaacatagtcccagaattcagctccaggtcatctgctgaatactctactgctcgcca 23878501 Query: 2037 gcaaatgaggtttgatccctacacaggagagccttacaagttcgaccccttcactgggga 2096 ||| | ||||||||||| | |||||| || || |||||||| || |||| ||| || || Sbjct: 23878502 acaagtaaggtttgatccattcacaggggaaccatacaagtttgatccctacaccggtga 23878561 Query: 2097 gcccatcaggccagaaccaagcctgcgtcgctcaggaagcttatactgac 2146 ||||||||||||||| | | || ||||||||||||||||||||||||| Sbjct: 23878562 acccatcaggccagaatcgaacccacgtcgctcaggaagcttatactgac 23878611 Score = 93.7 bits (47), Expect = 3e-15 Identities = 80/91 (87%) Strand = Plus / Plus Query: 430 gttgaccttgcaatggctccaaatcttgattcttcaacaagcaaaaggcgtctaaatcga 489 ||||||||||||||||||| ||| | ||| |||||| | ||||| |||||||||||| Sbjct: 23873779 gttgaccttgcaatggctcgaaaccatgactcttcagttgggaaaagacgtctaaatcga 23873838 Query: 490 ggctttgcgtttgtgcgattttcttctcatg 520 |||||||| |||||||||||||||||||||| Sbjct: 23873839 ggctttgcatttgtgcgattttcttctcatg 23873869 Score = 93.7 bits (47), Expect = 3e-15 Identities = 125/151 (82%) Strand = Plus / Plus Query: 869 aggtttcagttgctcgacccgcagtagagaacgataataagagaagccgtgaagaggtga 928 |||| ||||||||||| || | |||||||||||||| ||||||| |||||||| |||| Sbjct: 23876807 aggtctcagttgctcggcctgtggtagagaacgataaaaagagaattcgtgaagaagtga 23876866 Query: 929 aaactagaagatcaaatgtatcaggaggcaagccagattattctcatggcagatacggac 988 |||||||||||||||| |||||| || |||||| || ||||| |||| ||| |||| Sbjct: 23876867 aaactagaagatcaaacgtatcaacagacaagccggaccattcttatggaagacgtggac 23876926 Query: 989 atgattcgcttgatcgtcaaacgaaagctcc 1019 ||||||| |||||||||| | |||||||| Sbjct: 23876927 atgattcatatgatcgtcaagcaaaagctcc 23876957 Score = 87.7 bits (44), Expect = 2e-13 Identities = 56/60 (93%) Strand = Plus / Plus Query: 224 agggatttggatttgtgcgatttgcagaaagggagtgtgcttatattgctaaaaggcaaa 283 |||||| ||| |||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct: 23870347 agggatatggctttgtgcgatttgcggagagggagtgtgcttatattgctaaaaggcaaa 23870406 Score = 83.8 bits (42), Expect = 3e-12 Identities = 101/120 (84%), Gaps = 3/120 (2%) Strand = Plus / Plus Query: 523 gctgccgcacgtgtactccgcattggttccagaacagattttatgcttggtggtattttg 582 ||||| ||||| ||||| || ||||||||||||||||||||| |||||||||| ||| Sbjct: 23876079 gctgcagcacgcgtacttcgtattggttccagaacagattttctgcttggtgg---attg 23876135 Query: 583 catccagcaataaattggactgagagggaatctaatgtggatgctgatgaaatggccaag 642 ||||| ||||||||||| |||||| ||| ||| |||| |||| || |||||||||||| Sbjct: 23876136 catccttcaataaattgggctgagaaggagtctcatgtagatgaggacgaaatggccaag 23876195 Score = 77.8 bits (39), Expect = 2e-10 Identities = 69/79 (87%) Strand = Plus / Plus Query: 793 gagcttgacaatgcaataaaagaaatggatggtaaaactgtcagcggacctaaccgagga 852 ||||| ||||||||||||||||||||||||||| |||| || || |||||| ||||||| Sbjct: 23876631 gagctcgacaatgcaataaaagaaatggatggtgaaacagtgagaggacctgaccgaggg 23876690 Query: 853 ccatctttcaagatccagg 871 || |||||| |||||||| Sbjct: 23876691 gcaactttcaggatccagg 23876709 Score = 71.9 bits (36), Expect = 1e-08 Identities = 54/60 (90%) Strand = Plus / Plus Query: 730 cgggttgcagtctcaagaaaaggacaatacccagttggattcattcactttggcagtcgt 789 ||||||||||||||||| ||||||||||| ||||||||||| | ||||||| ||||||| Sbjct: 23876474 cgggttgcagtctcaaggaaaggacaatatccagttggatttgtccactttgccagtcgt 23876533 Score = 67.9 bits (34), Expect = 2e-07 Identities = 82/98 (83%) Strand = Plus / Plus Query: 1298 cagcacaaatattacaggatactacttctttgtccagaaattctgaaatgcaaaccaagc 1357 |||||| || ||| |||| | |||||| |||| | |||||| ||||||| || | |||| Sbjct: 23877925 cagcactaagattgcagggttctacttatttgccaagaaatcctgaaatacagaacaaga 23877984 Query: 1358 gataccgacatcaagattacgattacacagcatccggg 1395 ||| || ||||||||||||||| ||||||||||||||| Sbjct: 23877985 gattcccacatcaagattacgagtacacagcatccggg 23878022 Score = 61.9 bits (31), Expect = 1e-05 Identities = 49/55 (89%) Strand = Plus / Plus Query: 161 tattttctacctgtggtgagattgttgacttgcgcataatgaaggatcagaatgg 215 |||||||| | ||||| ||||||||||| ||||| |||||||| ||||||||||| Sbjct: 23870195 tattttctccttgtggagagattgttgatttgcggataatgaaagatcagaatgg 23870249 Score = 60.0 bits (30), Expect = 4e-05 Identities = 57/66 (86%) Strand = Plus / Plus Query: 1210 cagtttttgattacaggttctgacaaacgcaataaaggagaatatttcctttcattaatt 1269 ||||||||||| ||||| | || |||| |||||||||||| |||||| |||||||||| Sbjct: 23877751 cagtttttgatatcaggtgcagataaacacaataaaggagactatttcgcttcattaatt 23877810 Query: 1270 gctaag 1275 |||||| Sbjct: 23877811 gctaag 23877816 Score = 50.1 bits (25), Expect = 0.041 Identities = 31/33 (93%) Strand = Plus / Plus Query: 53 gggcggcgtcgcatggggattacgacgagcaag 85 |||||||||||||||| || ||||||||||||| Sbjct: 23869085 gggcggcgtcgcatggcgactacgacgagcaag 23869117 Score = 48.1 bits (24), Expect = 0.16 Identities = 36/40 (90%) Strand = Plus / Plus Query: 1612 gcacatgaacccaggcaggatacaggaaggcatctagatc 1651 ||||||||||| || |||||||| ||||||||||| |||| Sbjct: 23878305 gcacatgaaccaagacaggatactggaaggcatctcgatc 23878344 Score = 44.1 bits (22), Expect = 2.5 Identities = 22/22 (100%) Strand = Plus / Plus Query: 382 gaagaatttgaagaattgattc 403 |||||||||||||||||||||| Sbjct: 23871596 gaagaatttgaagaattgattc 23871617
>emb|AL731884.4|CNS08C8O Oryza sativa chromosome 12, . BAC OSJNBa0014A07 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 144767 Score = 109 bits (55), Expect = 5e-20 Identities = 70/75 (93%) Strand = Plus / Minus Query: 296 agcttcaaggaaagcgactagctgttgatctttcattggatcaagacacactcttctttg 355 |||||||||||||| |||| |||||||||||||| ||||||||||| ||||||||||||| Sbjct: 102158 agcttcaaggaaagagacttgctgttgatctttcgttggatcaagatacactcttctttg 102099 Query: 356 gaaatctttgcaaag 370 | ||||||||||||| Sbjct: 102098 ggaatctttgcaaag 102084 Score = 107 bits (54), Expect = 2e-19 Identities = 63/66 (95%) Strand = Plus / Minus Query: 94 gtgaaaggcgccgaggtgttcgtcggcgggttgccgcggtcggcgacggaggggacgctc 153 ||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||| Sbjct: 103963 gtgaaaggcgccgaggtgttcgtcggcgggttgccgcggtcggtgacggagcgggcgctc 103904 Query: 154 cgagag 159 |||||| Sbjct: 103903 cgagag 103898 Score = 99.6 bits (50), Expect = 5e-17 Identities = 140/170 (82%) Strand = Plus / Minus Query: 1977 cacaaacatagaaccagaattcaagtccaggtcctctgctgaatattctgctgaacagca 2036 ||||||||||| |||||||||| |||||||| ||||||||||| ||| ||| | || Sbjct: 94741 cacaaacatagtcccagaattcagctccaggtcatctgctgaatactctactgctcgcca 94682 Query: 2037 gcaaatgaggtttgatccctacacaggagagccttacaagttcgaccccttcactgggga 2096 ||| | ||||||||||| | |||||| || || |||||||| || |||| ||| || || Sbjct: 94681 acaagtaaggtttgatccattcacaggggaaccatacaagtttgatccctacaccggtga 94622 Query: 2097 gcccatcaggccagaaccaagcctgcgtcgctcaggaagcttatactgac 2146 ||||||||||||||| | | || ||||||||||||||||||||||||| Sbjct: 94621 acccatcaggccagaatcgaacccacgtcgctcaggaagcttatactgac 94572 Score = 99.6 bits (50), Expect = 5e-17 Identities = 74/82 (90%) Strand = Plus / Minus Query: 1051 gacccctatgaagcagctattaattcactaccttcggccgtcaacgaactcttacttcgt 1110 |||||||||||||||||| || |||||||||||| |||||||| |||||| |||||||| Sbjct: 95791 gacccctatgaagcagctgttgtttcactaccttcagccgtcaaggaactcctacttcgt 95732 Query: 1111 attttacgtcttggaattggca 1132 ||| |||||||| ||||||||| Sbjct: 95731 attctacgtcttagaattggca 95710 Score = 93.7 bits (47), Expect = 3e-15 Identities = 125/151 (82%) Strand = Plus / Minus Query: 869 aggtttcagttgctcgacccgcagtagagaacgataataagagaagccgtgaagaggtga 928 |||| ||||||||||| || | |||||||||||||| ||||||| |||||||| |||| Sbjct: 96376 aggtctcagttgctcggcctgtggtagagaacgataaaaagagaattcgtgaagaagtga 96317 Query: 929 aaactagaagatcaaatgtatcaggaggcaagccagattattctcatggcagatacggac 988 |||||||||||||||| |||||| || |||||| || ||||| |||| ||| |||| Sbjct: 96316 aaactagaagatcaaacgtatcaacagacaagccggaccattcttatggaagacgtggac 96257 Query: 989 atgattcgcttgatcgtcaaacgaaagctcc 1019 ||||||| |||||||||| | |||||||| Sbjct: 96256 atgattcatatgatcgtcaagcaaaagctcc 96226 Score = 93.7 bits (47), Expect = 3e-15 Identities = 80/91 (87%) Strand = Plus / Minus Query: 430 gttgaccttgcaatggctccaaatcttgattcttcaacaagcaaaaggcgtctaaatcga 489 ||||||||||||||||||| ||| | ||| |||||| | ||||| |||||||||||| Sbjct: 99404 gttgaccttgcaatggctcgaaaccatgactcttcagttgggaaaagacgtctaaatcga 99345 Query: 490 ggctttgcgtttgtgcgattttcttctcatg 520 |||||||| |||||||||||||||||||||| Sbjct: 99344 ggctttgcatttgtgcgattttcttctcatg 99314 Score = 87.7 bits (44), Expect = 2e-13 Identities = 56/60 (93%) Strand = Plus / Minus Query: 224 agggatttggatttgtgcgatttgcagaaagggagtgtgcttatattgctaaaaggcaaa 283 |||||| ||| |||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct: 102836 agggatatggctttgtgcgatttgcggagagggagtgtgcttatattgctaaaaggcaaa 102777 Score = 83.8 bits (42), Expect = 3e-12 Identities = 101/120 (84%), Gaps = 3/120 (2%) Strand = Plus / Minus Query: 523 gctgccgcacgtgtactccgcattggttccagaacagattttatgcttggtggtattttg 582 ||||| ||||| ||||| || ||||||||||||||||||||| |||||||||| ||| Sbjct: 97104 gctgcagcacgcgtacttcgtattggttccagaacagattttctgcttggtgg---attg 97048 Query: 583 catccagcaataaattggactgagagggaatctaatgtggatgctgatgaaatggccaag 642 ||||| ||||||||||| |||||| ||| ||| |||| |||| || |||||||||||| Sbjct: 97047 catccttcaataaattgggctgagaaggagtctcatgtagatgaggacgaaatggccaag 96988 Score = 77.8 bits (39), Expect = 2e-10 Identities = 69/79 (87%) Strand = Plus / Minus Query: 793 gagcttgacaatgcaataaaagaaatggatggtaaaactgtcagcggacctaaccgagga 852 ||||| ||||||||||||||||||||||||||| |||| || || |||||| ||||||| Sbjct: 96552 gagctcgacaatgcaataaaagaaatggatggtgaaacagtgagaggacctgaccgaggg 96493 Query: 853 ccatctttcaagatccagg 871 || |||||| |||||||| Sbjct: 96492 gcaactttcaggatccagg 96474 Score = 71.9 bits (36), Expect = 1e-08 Identities = 54/60 (90%) Strand = Plus / Minus Query: 730 cgggttgcagtctcaagaaaaggacaatacccagttggattcattcactttggcagtcgt 789 ||||||||||||||||| ||||||||||| ||||||||||| | ||||||| ||||||| Sbjct: 96709 cgggttgcagtctcaaggaaaggacaatatccagttggatttgtccactttgccagtcgt 96650 Score = 67.9 bits (34), Expect = 2e-07 Identities = 82/98 (83%) Strand = Plus / Minus Query: 1298 cagcacaaatattacaggatactacttctttgtccagaaattctgaaatgcaaaccaagc 1357 |||||| || ||| |||| | |||||| |||| | |||||| ||||||| || | |||| Sbjct: 95258 cagcactaagattgcagggttctacttatttgccaagaaatcctgaaatacagaacaaga 95199 Query: 1358 gataccgacatcaagattacgattacacagcatccggg 1395 ||| || ||||||||||||||| ||||||||||||||| Sbjct: 95198 gattcccacatcaagattacgagtacacagcatccggg 95161 Score = 61.9 bits (31), Expect = 1e-05 Identities = 49/55 (89%) Strand = Plus / Minus Query: 161 tattttctacctgtggtgagattgttgacttgcgcataatgaaggatcagaatgg 215 |||||||| | ||||| ||||||||||| ||||| |||||||| ||||||||||| Sbjct: 102988 tattttctccttgtggagagattgttgatttgcggataatgaaagatcagaatgg 102934 Score = 60.0 bits (30), Expect = 4e-05 Identities = 57/66 (86%) Strand = Plus / Minus Query: 1210 cagtttttgattacaggttctgacaaacgcaataaaggagaatatttcctttcattaatt 1269 ||||||||||| ||||| | || |||| |||||||||||| |||||| |||||||||| Sbjct: 95432 cagtttttgatatcaggtgcagataaacacaataaaggagactatttcgcttcattaatt 95373 Query: 1270 gctaag 1275 |||||| Sbjct: 95372 gctaag 95367 Score = 50.1 bits (25), Expect = 0.041 Identities = 31/33 (93%) Strand = Plus / Minus Query: 53 gggcggcgtcgcatggggattacgacgagcaag 85 |||||||||||||||| || ||||||||||||| Sbjct: 104098 gggcggcgtcgcatggcgactacgacgagcaag 104066 Score = 48.1 bits (24), Expect = 0.16 Identities = 36/40 (90%) Strand = Plus / Minus Query: 1612 gcacatgaacccaggcaggatacaggaaggcatctagatc 1651 ||||||||||| || |||||||| ||||||||||| |||| Sbjct: 94878 gcacatgaaccaagacaggatactggaaggcatctcgatc 94839 Score = 44.1 bits (22), Expect = 2.5 Identities = 22/22 (100%) Strand = Plus / Minus Query: 382 gaagaatttgaagaattgattc 403 |||||||||||||||||||||| Sbjct: 101587 gaagaatttgaagaattgattc 101566
>gb|AY495714.1|AY495714S1 Oreochromis niloticus KLR1 gene, complete sequence; KLR2 pseudogene, KLR3 (KLR3) and KLR4 (KLR4) genes, partial sequence; KLR5 (KLR5) gene, KLR6 and KLR7 pseudogenes, complete sequence Length = 134538 Score = 52.0 bits (26), Expect = 0.010 Identities = 26/26 (100%) Strand = Plus / Minus Query: 694 ctgaaaaagctttttggacgttttgg 719 |||||||||||||||||||||||||| Sbjct: 47646 ctgaaaaagctttttggacgttttgg 47621
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8 Length = 28434780 Score = 48.1 bits (24), Expect = 0.16 Identities = 42/48 (87%) Strand = Plus / Minus Query: 2316 gtattaggtttcgttaagacaaggctctaaccaagaattactttgtta 2363 |||||||||||| ||| ||||||||| | ||||| ||||||| ||||| Sbjct: 6223584 gtattaggtttcattaggacaaggctttgaccaaaaattactctgtta 6223537
>dbj|AP003919.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1734_E04 Length = 101439 Score = 48.1 bits (24), Expect = 0.16 Identities = 42/48 (87%) Strand = Plus / Minus Query: 2316 gtattaggtttcgttaagacaaggctctaaccaagaattactttgtta 2363 |||||||||||| ||| ||||||||| | ||||| ||||||| ||||| Sbjct: 9721 gtattaggtttcattaggacaaggctttgaccaaaaattactctgtta 9674
>dbj|AP003875.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1119_C05 Length = 126112 Score = 48.1 bits (24), Expect = 0.16 Identities = 42/48 (87%) Strand = Plus / Minus Query: 2316 gtattaggtttcgttaagacaaggctctaaccaagaattactttgtta 2363 |||||||||||| ||| ||||||||| | ||||| ||||||| ||||| Sbjct: 86977 gtattaggtttcattaggacaaggctttgaccaaaaattactctgtta 86930
>gb|AC104795.1| Homo sapiens BAC clone RP11-264O7 from 4, complete sequence Length = 178311 Score = 46.1 bits (23), Expect = 0.64 Identities = 23/23 (100%) Strand = Plus / Minus Query: 1941 tagggaaagaagatttgtatctc 1963 ||||||||||||||||||||||| Sbjct: 42493 tagggaaagaagatttgtatctc 42471
>gb|AC104068.3| Homo sapiens BAC clone RP11-252F15 from 4, complete sequence Length = 137716 Score = 46.1 bits (23), Expect = 0.64 Identities = 23/23 (100%) Strand = Plus / Minus Query: 1941 tagggaaagaagatttgtatctc 1963 ||||||||||||||||||||||| Sbjct: 94344 tagggaaagaagatttgtatctc 94322
>ref|XM_692808.1| PREDICTED: Danio rerio similar to Pleckstrin homology domain containing, family F (with FYVE domain) member 2 (LOC573731), mRNA Length = 1021 Score = 46.1 bits (23), Expect = 0.64 Identities = 29/31 (93%) Strand = Plus / Minus Query: 593 taaattggactgagagggaatctaatgtgga 623 ||||||||||||||||||| | ||||||||| Sbjct: 956 taaattggactgagagggactttaatgtgga 926
>ref|NM_200244.1| Danio rerio pleckstrin homology domain containing, family F (with FYVE domain) member 2 (plekhf2), mRNA gb|BC047820.1| Danio rerio pleckstrin homology domain containing, family F (with FYVE domain) member 2, mRNA (cDNA clone MGC:56073 IMAGE:5409859), complete cds Length = 1228 Score = 46.1 bits (23), Expect = 0.64 Identities = 29/31 (93%) Strand = Plus / Minus Query: 593 taaattggactgagagggaatctaatgtgga 623 ||||||||||||||||||| | ||||||||| Sbjct: 1209 taaattggactgagagggactttaatgtgga 1179
>emb|BX072576.4| Zebrafish DNA sequence from clone DKEY-242E21 in linkage group 16, complete sequence Length = 161771 Score = 46.1 bits (23), Expect = 0.64 Identities = 29/31 (93%) Strand = Plus / Minus Query: 593 taaattggactgagagggaatctaatgtgga 623 ||||||||||||||||||| | ||||||||| Sbjct: 53737 taaattggactgagagggactttaatgtgga 53707
>emb|AL732500.7| Mouse DNA sequence from clone RP23-208J6 on chromosome 4, complete sequence Length = 178699 Score = 46.1 bits (23), Expect = 0.64 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1301 cacaaatattacaggatactact 1323 ||||||||||||||||||||||| Sbjct: 72709 cacaaatattacaggatactact 72731
>ref|XM_659668.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN7156.2), mRNA Length = 1284 Score = 44.1 bits (22), Expect = 2.5 Identities = 25/26 (96%) Strand = Plus / Plus Query: 47 acaggagggcggcgtcgcatggggat 72 ||||||||||||||||||||| |||| Sbjct: 1169 acaggagggcggcgtcgcatgtggat 1194
>gb|AC125135.5| Mus musculus BAC clone RP24-321M1 from chromosome 17, complete sequence Length = 182503 Score = 44.1 bits (22), Expect = 2.5 Identities = 22/22 (100%) Strand = Plus / Plus Query: 454 cttgattcttcaacaagcaaaa 475 |||||||||||||||||||||| Sbjct: 45940 cttgattcttcaacaagcaaaa 45961
>gb|AC117255.3| Mus musculus BAC clone RP24-481E4 from 3, complete sequence Length = 209706 Score = 44.1 bits (22), Expect = 2.5 Identities = 25/26 (96%) Strand = Plus / Minus Query: 797 ttgacaatgcaataaaagaaatggat 822 |||||||||||||| ||||||||||| Sbjct: 110984 ttgacaatgcaatagaagaaatggat 110959
>gb|AC011193.3| Homo sapiens chromosome 17, clone RP11-521P1, complete sequence Length = 181022 Score = 44.1 bits (22), Expect = 2.5 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1842 atcagcacatgaacccaggcag 1863 |||||||||||||||||||||| Sbjct: 122796 atcagcacatgaacccaggcag 122775 Score = 44.1 bits (22), Expect = 2.5 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1608 atcagcacatgaacccaggcag 1629 |||||||||||||||||||||| Sbjct: 122796 atcagcacatgaacccaggcag 122775
>gb|AC002482.1|AC002482 Human BAC clone CTA-208O3, complete sequence Length = 107815 Score = 44.1 bits (22), Expect = 2.5 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1608 atcagcacatgaacccaggcag 1629 |||||||||||||||||||||| Sbjct: 20019 atcagcacatgaacccaggcag 20040 Score = 44.1 bits (22), Expect = 2.5 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1842 atcagcacatgaacccaggcag 1863 |||||||||||||||||||||| Sbjct: 20019 atcagcacatgaacccaggcag 20040 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 479,701,097 Number of extensions: 25587551 Number of successful extensions: 121256 Number of sequences better than 10.0: 22 Number of HSP's gapped: 121229 Number of HSP's successfully gapped: 72 Length of query: 2621 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 2598 Effective length of database: 18,503,978,556 Effective search space: 48073336288488 Effective search space used: 48073336288488 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 15 (30.2 bits)
