>P27393:CO4A2_ASCSU Collagen alpha-2(IV) chain precursor - Ascaris suum (Pig roundworm)|
           (Ascaris lumbricoides)
          Length = 1763
 Score = 35.4 bits (80), Expect = 0.19
 Identities = 37/116 (31%), Positives = 48/116 (41%), Gaps = 5/116 (4%)
 Frame = -1

Query: 345 AGPRRRRGIPS-RAVDGGEPPQGGHLELEDADVLGGLPEQHVDIGVPGVRDYLLELPQPP 169
           AGP   +G P  R VDG   P  G    +    L GLP +  ++G+PGVR      P   
Sbjct: 441 AGPPGAKGEPGPRGVDGQSIP--GLPGKDGRPGLDGLPGRKGEMGLPGVRG-----PPGD 493

Query: 168 QHHVLEGPPVHQRCHHPLGLSHREGGLPSHLSLCISPSLP----PQVAVSLTCAVC 13
             + L GPP  +    P G   R+G          +P LP    P+     TCA C
Sbjct: 494 SLNGLPGPPGPRGPQGPKGYDGRDG----------APGLPGIPGPKGDRGGTCAFC 539

>Q9V9W8:PYGO_DROME Protein pygopus - Drosophila melanogaster (Fruit fly)|
          Length = 815

 Score = 33.9 bits (76), Expect = 0.55
 Identities = 32/124 (25%), Positives = 47/124 (37%), Gaps = 10/124 (8%)
 Frame = -1

Query: 417 PPTQLMHNCIHS-----GAQNL*PWALRWAGPRRRRGIPSRAVDGGEPPQGGHL-----E 268
           PP    H+ ++S     G  N  P  L+   P    G  +   +    P  G +      
Sbjct: 482 PPAMSPHHSLNSAGPSPGMPNSGPSPLQ--SPAGPNGPNNNNSNNNNGPMMGQMIPNAVP 539

Query: 267 LEDADVLGGLPEQHVDIGVPGVRDYLLELPQPPQHHVLEGPPVHQRCHHPLGLSHREGGL 88
           ++    +GG P  H    +PG+    +  PQ P H    GPP     +HP    H  GG 
Sbjct: 540 MQHQQHMGGGPPGHGPGPMPGMGMNQMLPPQQPSHL---GPPHPNMMNHPHHPHHHPGGP 596

Query: 87  PSHL 76
           P H+
Sbjct: 597 PPHM 600

>Q7UFZ7:HEMH_RHOBA Ferrochelatase - Rhodopirellula baltica|
          Length = 351

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = +1

Query: 316 WDAAPPSRSGPPQRPWLE 369
           WD    SRSGPP +PWLE
Sbjct: 216 WDLVYQSRSGPPSQPWLE 233

>Q92AL5:RIMM_LISIN Probable 16S rRNA-processing protein rimM - Listeria innocua|
          Length = 172

 Score = 32.0 bits (71), Expect = 2.1
 Identities = 15/51 (29%), Positives = 30/51 (58%)
 Frame = -2

Query: 575 VANTSHCLVSNNGRLLLPNKLPCVTAHRSHSSQNVVLLEGVWGVHEMSRQE 423
           V NT +    N+ +   P KL  + +HR H + ++++ EG+ G+H++ R +
Sbjct: 35  VGNTVYLFEKNSKK---PEKL-IIRSHRKHKNFDLLMFEGLTGIHQVERMK 81

>Q6AHF2:HEMH_LEIXX Ferrochelatase - Leifsonia xyli subsp. xyli|
          Length = 389

 Score = 32.0 bits (71), Expect = 2.1
 Identities = 12/18 (66%), Positives = 12/18 (66%)
 Frame = +1

Query: 316 WDAAPPSRSGPPQRPWLE 369
           WD    SRSGPP  PWLE
Sbjct: 255 WDLVYQSRSGPPSMPWLE 272

>Q3U962:CO5A2_MOUSE Collagen alpha-2(V) chain precursor - Mus musculus (Mouse)|
          Length = 1497

 Score = 32.0 bits (71), Expect = 2.1
 Identities = 19/53 (35%), Positives = 25/53 (47%)
 Frame = -1

Query: 357  ALRWAGPRRRRGIPSRAVDGGEPPQGGHLELEDADVLGGLPEQHVDIGVPGVR 199
            A+ +AGP+   G P    + GEP Q G         L G P  H   GVPG++
Sbjct: 842  AVGFAGPQGPDGQPGVKGEPGEPGQKGDAGSPGPQGLAGSPGPHGPHGVPGLK 894

>P05997:CO5A2_HUMAN Collagen alpha-2(V) chain precursor - Homo sapiens (Human)|
          Length = 1499

 Score = 32.0 bits (71), Expect = 2.1
 Identities = 19/53 (35%), Positives = 25/53 (47%)
 Frame = -1

Query: 357  ALRWAGPRRRRGIPSRAVDGGEPPQGGHLELEDADVLGGLPEQHVDIGVPGVR 199
            A+ +AGP+   G P    + GEP Q G         L G P  H   GVPG++
Sbjct: 844  AVGFAGPQGPDGQPGVKGEPGEPGQKGDAGSPGPQGLAGSPGPHGPNGVPGLK 896

>Q3UH68:LIMC1_MOUSE LIM and calponin homology domains-containing protein 1 - Mus|
           musculus (Mouse)
          Length = 1057

 Score = 31.6 bits (70), Expect = 2.7
 Identities = 15/27 (55%), Positives = 18/27 (66%)
 Frame = -1

Query: 111 LSHREGGLPSHLSLCISPSLPPQVAVS 31
           L  REGGLP   SL  SPS  P+++VS
Sbjct: 885 LKTREGGLPEEQSLTPSPSANPEISVS 911

>Q8Y6A2:RIMM_LISMO Probable 16S rRNA-processing protein rimM - Listeria monocytogenes|
          Length = 172

 Score = 31.2 bits (69), Expect = 3.5
 Identities = 15/51 (29%), Positives = 29/51 (56%)
 Frame = -2

Query: 575 VANTSHCLVSNNGRLLLPNKLPCVTAHRSHSSQNVVLLEGVWGVHEMSRQE 423
           V NT +    N+ +   P KL  + +HR H + ++++ EG  G+H++ R +
Sbjct: 35  VGNTVYLFEKNSKK---PEKL-IIRSHRKHKNFDLLMFEGFTGIHQVERMK 81

>Q71YM3:RIMM_LISMF Probable 16S rRNA-processing protein rimM - Listeria monocytogenes|
           serotype 4b (strain F2365)
          Length = 169

 Score = 31.2 bits (69), Expect = 3.5
 Identities = 15/51 (29%), Positives = 29/51 (56%)
 Frame = -2

Query: 575 VANTSHCLVSNNGRLLLPNKLPCVTAHRSHSSQNVVLLEGVWGVHEMSRQE 423
           V NT +    N+ +   P KL  + +HR H + ++++ EG  G+H++ R +
Sbjct: 32  VGNTVYLFEKNSKK---PEKL-IIRSHRKHKNFDLLMFEGFTGIHQVERMK 78

>O83396:Y381_TREPA Uncharacterized protein TP_0381 - Treponema pallidum|
          Length = 238

 Score = 30.8 bits (68), Expect = 4.6
 Identities = 16/29 (55%), Positives = 18/29 (62%)
 Frame = -2

Query: 116 LAFPTVKVAFLLISLCVSLPLSLPRLLCH 30
           L F    VA LL +L V LP +LPRLL H
Sbjct: 18  LHFAIASVAVLLSALFVLLPFALPRLLAH 46

>Q9NJ15:PCSK5_BRACL Proprotein convertase subtilisin/kexin type 5 precursor -|
           Branchiostoma californiensis (California lancelet)
           (Amphioxus)
          Length = 1696

 Score = 30.8 bits (68), Expect = 4.6
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
 Frame = +2

Query: 482 SCGSCVRSHMGVCLAAEAGHCY*QDNGWC--------WLQEQLSKPLPASYGIYSCFYSA 637
           SC +C   H G CL+   G+ + +D G C        +  E+  K L  S    +C  SA
Sbjct: 683 SCATCHGRHSGQCLSCHEGNYFVEDEGTCSEECGQGYYKDEEERKCLDCSADCLTCQVSA 742

>Q5YMR7:RNPA_NOCFA Ribonuclease P protein component - Nocardia farcinica|
          Length = 156

 Score = 30.8 bits (68), Expect = 4.7
 Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
 Frame = +1

Query: 121 VVASLMHRRPFQHMVLRRLRELKKIVPDARDADVDVLLR-----QTAEYICILELKVAAL 285
           +V+  +     +H V RRLR +   + D   AD DV++R      TA+   +     + L
Sbjct: 68  IVSKAVGSAVVRHRVARRLRHMCATLVDEVPADADVVIRALPGAATADSAELARQVRSGL 127

Query: 286 RRLSAIYGA*WDAAPPSRSGPPQR 357
           R+L    G     AP + SG   R
Sbjct: 128 RKLGVTPGGGRSPAPRAHSGARPR 151

>O80536:PIF3_ARATH Phytochrome-interacting factor 3 - Arabidopsis thaliana (Mouse-ear|
           cress)
          Length = 524

 Score = 30.4 bits (67), Expect = 6.1
 Identities = 20/76 (26%), Positives = 37/76 (48%)
 Frame = +1

Query: 124 VASLMHRRPFQHMVLRRLRELKKIVPDARDADVDVLLRQTAEYICILELKVAALRRLSAI 303
           V +L  RR  +  +  ++R L++++P+    D   +L +  EY+  L+L+V  +   S  
Sbjct: 347 VHNLSERRR-RDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKSLQLQVQIMSMASGY 405

Query: 304 YGA*WDAAPPSRSGPP 351
           Y       PP+   PP
Sbjct: 406 Y------LPPAVMFPP 415

>P0A576:HEMH_MYCTU Ferrochelatase - Mycobacterium tuberculosis|
          Length = 344

 Score = 30.4 bits (67), Expect = 6.1
 Identities = 13/18 (72%), Positives = 14/18 (77%)
 Frame = +1

Query: 316 WDAAPPSRSGPPQRPWLE 369
           +D A  SRSGPPQ PWLE
Sbjct: 207 FDLAWQSRSGPPQVPWLE 224

>P0A577:HEMH_MYCBO Ferrochelatase - Mycobacterium bovis|
          Length = 344

 Score = 30.4 bits (67), Expect = 6.1
 Identities = 13/18 (72%), Positives = 14/18 (77%)
 Frame = +1

Query: 316 WDAAPPSRSGPPQRPWLE 369
           +D A  SRSGPPQ PWLE
Sbjct: 207 FDLAWQSRSGPPQVPWLE 224

>P35799:DPY2_CAEEL Cuticle collagen dpy-2 precursor - Caenorhabditis elegans|
          Length = 360

 Score = 30.4 bits (67), Expect = 6.1
 Identities = 22/67 (32%), Positives = 28/67 (41%)
 Frame = -1

Query: 342 GPRRRRGIPSRAVDGGEPPQGGHLELEDADVLGGLPEQHVDIGVPGVRDYLLELPQPPQH 163
           GPR   G P    D GE   GG    +      G P     IG PG    + +  + P+ 
Sbjct: 174 GPRGVPGHPGFPGDPGEYGIGGRPGSDGMPGKPGDPGLAGPIGPPGESGPIGDKGRTPEA 233

Query: 162 HVLEGPP 142
           HV+ GPP
Sbjct: 234 HVIPGPP 240

>P35763:PERF_RAT Perforin-1 precursor - Rattus norvegicus (Rat)|
          Length = 554

 Score = 30.0 bits (66), Expect = 7.9
 Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = -2

Query: 533 LLLPNKLP--CVTAHRSHSSQNVVLLEGVWGVHE 438
           LLLP  +P  C TA RS   QN   + GVW   E
Sbjct: 12  LLLPRPVPAPCYTATRSECKQNHKFVPGVWAAGE 45

>P97367:MEIS2_MOUSE Homeobox protein Meis2 - Mus musculus (Mouse)|
          Length = 477

 Score = 30.0 bits (66), Expect = 8.0
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -1

Query: 180 PQPPQHHVLEGPPVHQRCHHPLGLSHREGGLPSHLSLCISPSL 52
           P PP HH+  GPP+H   H+     H    +P+ +   ++ +L
Sbjct: 32  PIPPVHHLNHGPPLHATQHYGAHAPH-PNVMPASMGSAVNDAL 73

>O14770:MEIS2_HUMAN Homeobox protein Meis2 - Homo sapiens (Human)|
          Length = 477

 Score = 30.0 bits (66), Expect = 8.0
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -1

Query: 180 PQPPQHHVLEGPPVHQRCHHPLGLSHREGGLPSHLSLCISPSL 52
           P PP HH+  GPP+H   H+     H    +P+ +   ++ +L
Sbjct: 32  PIPPVHHLNHGPPLHATQHYGAHAPH-PNVMPASMGSAVNDAL 73

>P72183:HEMH_PROFF Ferrochelatase - Propionibacterium freudenreichii subsp.|
           freudenreichii
          Length = 352

 Score = 30.0 bits (66), Expect = 8.0
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
 Frame = +1

Query: 316 WDAAPPSRSGPPQRPWLEVLSPRVDAIVH*L---GRRNISC 429
           W+ A  SRSG P+ PWLE   P ++ ++  L   G R++ C
Sbjct: 219 WELAYQSRSGSPRTPWLE---PDINDVITRLAGEGVRDVIC 256

>Q9ZH75:DNAA_STRCH Chromosomal replication initiator protein dnaA - Streptomyces|
           chrysomallus
          Length = 624

 Score = 30.0 bits (66), Expect = 8.0
 Identities = 25/76 (32%), Positives = 28/76 (36%), Gaps = 2/76 (2%)
 Frame = -1

Query: 354 LRWAGPRRRRGIPSRAVDGGEP--PQGGHLELEDADVLGGLPEQHVDIGVPGVRDYLLEL 181
           L W  PR   G   R    GEP      + E E+       PEQ         + Y    
Sbjct: 167 LSWQQPRHG-GYQDREQPSGEPYRESESYRERENEQYREQAPEQWR-------QPYGTGR 218

Query: 180 PQPPQHHVLEGPPVHQ 133
           PQ PQH    GPP HQ
Sbjct: 219 PQQPQHDYRSGPPEHQ 234

>Q810Y4:CONA1_RAT Collagen alpha-1(XXIII) chain - Rattus norvegicus (Rat)|
          Length = 532

 Score = 30.0 bits (66), Expect = 8.0
 Identities = 30/94 (31%), Positives = 32/94 (34%), Gaps = 11/94 (11%)
 Frame = -1

Query: 342 GPRRRRGIPSRAVDGGEPPQGGHLELE---DADVLGGLPEQHVDIGVPG--------VRD 196
           GP  RRG P R  D G P Q G          D   GLP    + G PG         +D
Sbjct: 110 GPPGRRGKPGRRGDPGPPGQSGRDGYPGPLGLDGKPGLPGPKGEKGAPGDFGPRGAQGQD 169

Query: 195 YLLELPQPPQHHVLEGPPVHQRCHHPLGLSHREG 94
                P PP      GPP       P G    EG
Sbjct: 170 GAAGPPGPPGPPGARGPPGDTGKDGPRGAQGPEG 203

>O00555:CAC1A_HUMAN Voltage-dependent P/Q-type calcium channel subunit alpha-1A - Homo|
            sapiens (Human)
          Length = 2505

 Score = 30.0 bits (66), Expect = 8.0
 Identities = 31/136 (22%), Positives = 45/136 (33%), Gaps = 10/136 (7%)
 Frame = -1

Query: 537  PASAAKQTPMCDRTQEPQLTKRSXXXXXXXXTRDEQARNVPPTQLMHNCIHSGAQNL*PW 358
            P+++   TP   R Q PQ                +   + PP Q         A    P 
Sbjct: 2272 PSTSGTSTPRRGRRQLPQTPSTPRPHVSYSPVIRKAGGSGPPQQQQQQQQQQQAVAR-PG 2330

Query: 357  ALRWAGPRRRRGIPSRAVDGGEPPQGGHLELEDADVLGGLPE----------QHVDIGVP 208
                +GPRR  G  +  + G  PP GGH       +   +P           +H     P
Sbjct: 2331 RAATSGPRRYPGPTAEPLAGDRPPTGGHSSGRSPRMERRVPGPARSESPRACRHGGARWP 2390

Query: 207  GVRDYLLELPQPPQHH 160
                ++ E P  P+HH
Sbjct: 2391 ASGPHVSEGPPGPRHH 2406


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 119,283,585
Number of extensions: 2940564
Number of successful extensions: 8463
Number of sequences better than 10.0: 24
Number of HSP's gapped: 8451
Number of HSP's successfully gapped: 24
Length of query: 220
Length of database: 100,686,439
Length adjustment: 109
Effective length of query: 111
Effective length of database: 70,788,284
Effective search space: 7857499524
Effective search space used: 7857499524
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)