ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf92m09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|CT835830.1| Oryza sativa (indica cultivar-group) cDNA clone:... 121 3e-24
2dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 113 8e-22
3dbj|AP005568.3| Oryza sativa (japonica cultivar-group) genomic D... 113 8e-22
4emb|CT835928.1| Oryza sativa (indica cultivar-group) cDNA clone:... 70 1e-08
5ref|NM_001068458.1| Oryza sativa (japonica cultivar-group) Os08g... 70 1e-08
6dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 70 1e-08
7dbj|AP004564.3| Oryza sativa (japonica cultivar-group) genomic D... 70 1e-08
8dbj|AP004764.2| Oryza sativa (japonica cultivar-group) genomic D... 70 1e-08
9gb|AY106670.1| Zea mays PCO096646 mRNA sequence 66 2e-07
10emb|AL627188.18| Mouse DNA sequence from clone RP23-113G7 on chr... 46 0.16
11gb|CP000078.1| Leishmania major strain Friedlin chromosome 2, co... 44 0.62
12ref|XM_817114.1| Leishmania major strain Friedlin hypothetical p... 44 0.62
13ref|XM_001235332.1| PREDICTED: Gallus gallus hypothetical protei... 42 2.5
14ref|XM_001232181.1| PREDICTED: Gallus gallus similar to glutamat... 42 2.5
15gb|AC186541.2| Gallus gallus BAC clone CH261-93I3 from chromosom... 42 2.5
16gb|DQ144444.1| Ascocalyx abietina clone pCT850-AU58-b microsatel... 42 2.5
17emb|AL845484.9| Mouse DNA sequence from clone RP23-336L14 on chr... 42 2.5
18emb|AL669915.8| Mouse DNA sequence from clone RP23-13B21 on chro... 42 2.5
19ref|XM_001235605.1| PREDICTED: Gallus gallus hypothetical protei... 40 9.7
20gb|DQ926670.1| Uncultured bacterium clone N4 16S ribosomal RNA g... 40 9.7
21ref|XM_001225790.1| Chaetomium globosum CBS 148.51 predicted pro... 40 9.7
22ref|XM_001112906.1| PREDICTED: Macaca mulatta hypothetical prote... 40 9.7
23gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complet... 40 9.7
24gb|AC163015.4| Mus musculus chromosome 3, clone RP23-149I5, comp... 40 9.7
25gb|AC137981.2| Mus musculus BAC clone RP24-156N24 from chromosom... 40 9.7
26gb|AC146220.3| Pan troglodytes BAC clone RP43-27B14 from 7, comp... 40 9.7
27gb|AC115290.5| Mus musculus BAC clone RP23-65M10 from chromosome... 40 9.7
28gb|AC136729.7| Mus musculus chromosome 3, clone RP23-175I24, com... 40 9.7
29gb|AC142318.1| Pan troglodytes BAC clone RP43-55D2 from 7, compl... 40 9.7
30gb|CP000107.1| Ehrlichia canis str. Jake, complete genome 40 9.7
31gb|AC092899.6| Homo sapiens 3 BAC RP11-329N5 (Roswell Park Cance... 40 9.7
32emb|AL139010.29| Human DNA sequence from clone RP11-444M10 on ch... 40 9.7
33emb|BX572096.1| Prochlorococcus marinus MIT9313 complete genome;... 40 9.7
34gb|AC012325.9| Homo sapiens chromosome 16 clone RP11-93H5, compl... 40 9.7
35gb|AC007249.5| Homo sapiens BAC clone RP11-320M2 from 2, complet... 40 9.7
36gb|AC132186.3| Homo sapiens chromosome 16 clone CTD-2258A20, com... 40 9.7
37emb|AL732501.8| Mouse DNA sequence from clone RP23-325I22 on chr... 40 9.7
38dbj|AB088224.1| Streptomyces rochei plasmid pSLA2-L DNA, complet... 40 9.7
39ref|NM_013058.2| Rattus norvegicus inhibitor of DNA binding 3 (I... 40 9.7
40gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome 40 9.7
41emb|AL390778.31| Human DNA sequence from clone RP11-399H11 on ch... 40 9.7
42emb|AJ812656.1| Acinetobacter sp. 93A2 partial 16S rRNA gene, st... 40 9.7
43emb|AL627342.15| Mouse DNA sequence from clone RP23-281G20 on ch... 40 9.7

>emb|CT835830.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA004N04, full
           insert sequence
          Length = 732
 Score =  121 bits (61), Expect = 3e-24
 Identities = 142/169 (84%)
 Strand = Plus / Plus

                                                                       
Query: 137 tgcacaggaggcccttccagcacatggtgctgaggaggctgagggagctcaagaagatag 196
           |||| |||| |||| | ||||||||||||| ||||||||| |||||||| ||||||||||
Sbjct: 123 tgcataggaagccccttcagcacatggtgcagaggaggctaagggagctgaagaagatag 182

                                                                       
Query: 197 tcccggacgcccgggacgccgatgtcgacgtgctgctccggcagaccgccgagtacatct 256
           | || || ||||  || | | | ||||| |||||||||||||| || || ||||||||||
Sbjct: 183 taccagatgcccatgaggacaacgtcgatgtgctgctccggcaaacggctgagtacatct 242

                                                            
Query: 257 gcatcctcgagctcaaggtggccgccctgcggaggctctccgccatcta 305
           ||||||| ||||| |||||||||| | |||||| |||| |||| |||||
Sbjct: 243 gcatccttgagctgaaggtggccgtcttgcggaagctcgccgcaatcta 291



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                     
Query: 512 ggagtttgtttggcagcagaagccggccattgttactgacaa 553
           |||||||||||||| | ||||||| ||||||||| |||||||
Sbjct: 474 ggagtttgtttggctggagaagccagccattgtttctgacaa 515



to top

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9
          Length = 22696651

 Score =  113 bits (57), Expect = 8e-22
 Identities = 141/169 (83%)
 Strand = Plus / Minus

                                                                            
Query: 137      tgcacaggaggcccttccagcacatggtgctgaggaggctgagggagctcaagaagatag 196
                |||| |||| |||| | ||||||||||||| ||||||||| |||||||| ||||||||||
Sbjct: 15451352 tgcataggaagccccttcagcacatggtgcagaggaggctaagggagctgaagaagatag 15451293

                                                                            
Query: 197      tcccggacgcccgggacgccgatgtcgacgtgctgctccggcagaccgccgagtacatct 256
                | || || ||||  || | | | ||||| |||||||||||||| || || ||||||||||
Sbjct: 15451292 taccagatgcccatgaggacaacgtcgatgtgctgctccggcaaacggctgagtacatct 15451233

                                                                 
Query: 257      gcatcctcgagctcaaggtggccgccctgcggaggctctccgccatcta 305
                ||||||| ||||| ||||||||||   |||||| |||| |||| |||||
Sbjct: 15451232 gcatccttgagctgaaggtggccgtgttgcggaagctcgccgcaatcta 15451184



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                          
Query: 512      ggagtttgtttggcagcagaagccggccattgttactgacaa 553
                |||||||||||||| | ||||||| ||||||||| |||||||
Sbjct: 15451001 ggagtttgtttggctggagaagccagccattgtttctgacaa 15450960



to top

>dbj|AP005568.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OJ1299_A11
          Length = 160099

 Score =  113 bits (57), Expect = 8e-22
 Identities = 141/169 (83%)
 Strand = Plus / Minus

                                                                          
Query: 137    tgcacaggaggcccttccagcacatggtgctgaggaggctgagggagctcaagaagatag 196
              |||| |||| |||| | ||||||||||||| ||||||||| |||||||| ||||||||||
Sbjct: 100644 tgcataggaagccccttcagcacatggtgcagaggaggctaagggagctgaagaagatag 100585

                                                                          
Query: 197    tcccggacgcccgggacgccgatgtcgacgtgctgctccggcagaccgccgagtacatct 256
              | || || ||||  || | | | ||||| |||||||||||||| || || ||||||||||
Sbjct: 100584 taccagatgcccatgaggacaacgtcgatgtgctgctccggcaaacggctgagtacatct 100525

                                                               
Query: 257    gcatcctcgagctcaaggtggccgccctgcggaggctctccgccatcta 305
              ||||||| ||||| ||||||||||   |||||| |||| |||| |||||
Sbjct: 100524 gcatccttgagctgaaggtggccgtgttgcggaagctcgccgcaatcta 100476



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                        
Query: 512    ggagtttgtttggcagcagaagccggccattgttactgacaa 553
              |||||||||||||| | ||||||| ||||||||| |||||||
Sbjct: 100293 ggagtttgtttggctggagaagccagccattgtttctgacaa 100252



to top

>emb|CT835928.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA041E14, full
           insert sequence
          Length = 738

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 83/99 (83%)
 Strand = Plus / Plus

                                                                       
Query: 213 cgccgatgtcgacgtgctgctccggcagaccgccgagtacatctgcatcctcgagctcaa 272
           |||||| ||||||| ||||||||  |   |||||||||||||||||  ||| ||| ||||
Sbjct: 264 cgccgacgtcgacgcgctgctccaccgcgccgccgagtacatctgcgccctggaggtcaa 323

                                                  
Query: 273 ggtggccgccctgcggaggctctccgccatctacggcgc 311
           ||| |||| ||| || | |||||||||||||||||||||
Sbjct: 324 ggtcgccgtcctccgcaagctctccgccatctacggcgc 362



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 46/53 (86%)
 Strand = Plus / Plus

                                                                
Query: 142 aggaggcccttccagcacatggtgctgaggaggctgagggagctcaagaagat 194
           |||||||| |||||||  |||||||||||| ||||  ||||||| ||||||||
Sbjct: 163 aggaggccgttccagctgatggtgctgaggcggctccgggagctgaagaagat 215



to top

>ref|NM_001068458.1| Oryza sativa (japonica cultivar-group) Os08g0444500 (Os08g0444500)
           mRNA, complete cds
          Length = 282

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 83/99 (83%)
 Strand = Plus / Plus

                                                                       
Query: 213 cgccgatgtcgacgtgctgctccggcagaccgccgagtacatctgcatcctcgagctcaa 272
           |||||| ||||||| ||||||||  |   |||||||||||||||||  ||| ||| ||||
Sbjct: 180 cgccgacgtcgacgcgctgctccaccgcgccgccgagtacatctgcgccctggaggtcaa 239

                                                  
Query: 273 ggtggccgccctgcggaggctctccgccatctacggcgc 311
           ||| |||| ||| || | |||||||||||||||||||||
Sbjct: 240 ggtcgccgtcctccgcaagctctccgccatctacggcgc 278



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 46/53 (86%)
 Strand = Plus / Plus

                                                                
Query: 142 aggaggcccttccagcacatggtgctgaggaggctgagggagctcaagaagat 194
           |||||||| |||||||  |||||||||||| ||||  ||||||| ||||||||
Sbjct: 79  aggaggccgttccagctgatggtgctgaggcggctccgggagctgaagaagat 131



to top

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8
          Length = 28434780

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 83/99 (83%)
 Strand = Plus / Minus

                                                                            
Query: 213      cgccgatgtcgacgtgctgctccggcagaccgccgagtacatctgcatcctcgagctcaa 272
                |||||| ||||||| ||||||||  |   |||||||||||||||||  ||| ||| ||||
Sbjct: 21646676 cgccgacgtcgacgcgctgctccaccgcgccgccgagtacatctgcgccctggaggtcaa 21646617

                                                       
Query: 273      ggtggccgccctgcggaggctctccgccatctacggcgc 311
                ||| |||| ||| || | |||||||||||||||||||||
Sbjct: 21646616 ggtcgccgtcctccgcaagctctccgccatctacggcgc 21646578



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                     
Query: 142      aggaggcccttccagcacatggtgctgaggaggctgagggagctcaagaagat 194
                |||||||| |||||||  |||||||||||| ||||  ||||||| ||||||||
Sbjct: 21646777 aggaggccgttccagctgatggtgctgaggcggctccgggagctgaagaagat 21646725



to top

>dbj|AP004564.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0479C12
          Length = 136799

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 83/99 (83%)
 Strand = Plus / Minus

                                                                         
Query: 213   cgccgatgtcgacgtgctgctccggcagaccgccgagtacatctgcatcctcgagctcaa 272
             |||||| ||||||| ||||||||  |   |||||||||||||||||  ||| ||| ||||
Sbjct: 14246 cgccgacgtcgacgcgctgctccaccgcgccgccgagtacatctgcgccctggaggtcaa 14187

                                                    
Query: 273   ggtggccgccctgcggaggctctccgccatctacggcgc 311
             ||| |||| ||| || | |||||||||||||||||||||
Sbjct: 14186 ggtcgccgtcctccgcaagctctccgccatctacggcgc 14148



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                  
Query: 142   aggaggcccttccagcacatggtgctgaggaggctgagggagctcaagaagat 194
             |||||||| |||||||  |||||||||||| ||||  ||||||| ||||||||
Sbjct: 14347 aggaggccgttccagctgatggtgctgaggcggctccgggagctgaagaagat 14295



to top

>dbj|AP004764.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0708B04
          Length = 170523

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 83/99 (83%)
 Strand = Plus / Minus

                                                                          
Query: 213    cgccgatgtcgacgtgctgctccggcagaccgccgagtacatctgcatcctcgagctcaa 272
              |||||| ||||||| ||||||||  |   |||||||||||||||||  ||| ||| ||||
Sbjct: 106850 cgccgacgtcgacgcgctgctccaccgcgccgccgagtacatctgcgccctggaggtcaa 106791

                                                     
Query: 273    ggtggccgccctgcggaggctctccgccatctacggcgc 311
              ||| |||| ||| || | |||||||||||||||||||||
Sbjct: 106790 ggtcgccgtcctccgcaagctctccgccatctacggcgc 106752



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                   
Query: 142    aggaggcccttccagcacatggtgctgaggaggctgagggagctcaagaagat 194
              |||||||| |||||||  |||||||||||| ||||  ||||||| ||||||||
Sbjct: 106951 aggaggccgttccagctgatggtgctgaggcggctccgggagctgaagaagat 106899



to top

>gb|AY106670.1| Zea mays PCO096646 mRNA sequence
          Length = 608

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 66/77 (85%)
 Strand = Plus / Plus

                                                                       
Query: 220 gtcgacgtgctgctccggcagaccgccgagtacatctgcatcctcgagctcaaggtggcc 279
           ||||||||| ||||||||| |||||||||||||||||||   || ||||| |||||||| 
Sbjct: 228 gtcgacgtggtgctccggcggaccgccgagtacatctgcgcgctggagctgaaggtggca 287

                            
Query: 280 gccctgcggaggctctc 296
             ||| |||||||||||
Sbjct: 288 ctcctccggaggctctc 304



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 44/49 (89%)
 Strand = Plus / Plus

                                                            
Query: 146 ggcccttccagcacatggtgctgaggaggctgagggagctcaagaagat 194
           |||| ||||||| ||||||||||||| ||||| ||||||| ||||||||
Sbjct: 145 ggccgttccagctcatggtgctgaggcggctgcgggagctgaagaagat 193



to top

>emb|AL627188.18| Mouse DNA sequence from clone RP23-113G7 on chromosome 4, complete
              sequence
          Length = 208153

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 21     cacaagttagtgacacagcaacc 43
              |||||||||||||||||||||||
Sbjct: 111308 cacaagttagtgacacagcaacc 111286



to top

>gb|CP000078.1| Leishmania major strain Friedlin chromosome 2, complete sequence
          Length = 355714

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 262   ctcgagctcaaggtggccgccc 283
             ||||||||||||||||||||||
Sbjct: 26156 ctcgagctcaaggtggccgccc 26135



to top

>ref|XM_817114.1| Leishmania major strain Friedlin hypothetical protein (LMJ_0092)
            partial mRNA
          Length = 2991

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 262  ctcgagctcaaggtggccgccc 283
            ||||||||||||||||||||||
Sbjct: 1708 ctcgagctcaaggtggccgccc 1729



to top

>ref|XM_001235332.1| PREDICTED: Gallus gallus hypothetical protein LOC772157
           (LOC772157), mRNA
          Length = 978

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 163 gtgctgaggaggctgagggag 183
           |||||||||||||||||||||
Sbjct: 811 gtgctgaggaggctgagggag 831



to top

>ref|XM_001232181.1| PREDICTED: Gallus gallus similar to glutamate receptor, ionotropic,
            N-methyl-D-aspartate 3A (LOC769001), mRNA
          Length = 3542

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 557  aatggctggtgttggctacaagaac 581
            |||||||||||||||| ||||||||
Sbjct: 3421 aatggctggtgttggccacaagaac 3397



to top

>gb|AC186541.2| Gallus gallus BAC clone CH261-93I3 from chromosome z, complete sequence
          Length = 171062

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 557   aatggctggtgttggctacaagaac 581
             |||||||||||||||| ||||||||
Sbjct: 47716 aatggctggtgttggccacaagaac 47692



to top

>gb|DQ144444.1| Ascocalyx abietina clone pCT850-AU58-b microsatellite sequence
          Length = 837

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 558 atggctggtgttggctacaag 578
           |||||||||||||||||||||
Sbjct: 336 atggctggtgttggctacaag 316



to top

>emb|AL845484.9| Mouse DNA sequence from clone RP23-336L14 on chromosome 11 Contains the
             3' end of the Sez6 gene for seizure related gene 6,
             complete sequence
          Length = 47702

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 606   cttatggaatatatagttgtt 626
             |||||||||||||||||||||
Sbjct: 29729 cttatggaatatatagttgtt 29749



to top

>emb|AL669915.8| Mouse DNA sequence from clone RP23-13B21 on chromosome 11 no genes,
              complete sequence
          Length = 193440

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 612    gaatatatagttgtttctatt 632
              |||||||||||||||||||||
Sbjct: 145368 gaatatatagttgtttctatt 145388



to top

>ref|XM_001235605.1| PREDICTED: Gallus gallus hypothetical protein LOC772473
           (LOC776041), mRNA
          Length = 423

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 321 tgccgcgcctccgtctcggt 340
           ||||||||||||||||||||
Sbjct: 207 tgccgcgcctccgtctcggt 226



to top

>gb|DQ926670.1| Uncultured bacterium clone N4 16S ribosomal RNA gene, partial
           sequence
          Length = 893

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 502 gtcacacatgggagtttgtt 521
           ||||||||||||||||||||
Sbjct: 812 gtcacacatgggagtttgtt 831



to top

>ref|XM_001225790.1| Chaetomium globosum CBS 148.51 predicted protein (CHGG_08135) mRNA,
           complete cds
          Length = 1602

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 162 ggtgctgaggaggctgaggg 181
           ||||||||||||||||||||
Sbjct: 775 ggtgctgaggaggctgaggg 794



to top

>ref|XM_001112906.1| PREDICTED: Macaca mulatta hypothetical protein LOC719156
           (LOC719156), mRNA
          Length = 435

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 445 accccccacaccccctccag 464
           ||||||||||||||||||||
Sbjct: 99  accccccacaccccctccag 118



to top

>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence
          Length = 2580084

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 222    cgacgtgctgctccggcaga 241
              ||||||||||||||||||||
Sbjct: 833790 cgacgtgctgctccggcaga 833809



to top

>gb|AC163015.4| Mus musculus chromosome 3, clone RP23-149I5, complete sequence
          Length = 200423

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 13     acacacagcacaagttagtg 32
              ||||||||||||||||||||
Sbjct: 111450 acacacagcacaagttagtg 111469



to top

>gb|AC137981.2| Mus musculus BAC clone RP24-156N24 from chromosome 10, complete
           sequence
          Length = 151463

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 578 gaacaattatctaagcccct 597
           ||||||||||||||||||||
Sbjct: 609 gaacaattatctaagcccct 628



to top

>gb|AC146220.3| Pan troglodytes BAC clone RP43-27B14 from 7, complete sequence
          Length = 200195

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 137    tgcacaggaggcccttccag 156
              ||||||||||||||||||||
Sbjct: 182650 tgcacaggaggcccttccag 182631



to top

>gb|AC115290.5| Mus musculus BAC clone RP23-65M10 from chromosome 10, complete sequence
          Length = 245623

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 578   gaacaattatctaagcccct 597
             ||||||||||||||||||||
Sbjct: 62507 gaacaattatctaagcccct 62488



to top

>gb|AC136729.7| Mus musculus chromosome 3, clone RP23-175I24, complete sequence
          Length = 216602

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 166    ctgaggaggctgagggagct 185
              ||||||||||||||||||||
Sbjct: 100488 ctgaggaggctgagggagct 100469



to top

>gb|AC142318.1| Pan troglodytes BAC clone RP43-55D2 from 7, complete sequence
          Length = 166749

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 137   tgcacaggaggcccttccag 156
             ||||||||||||||||||||
Sbjct: 53310 tgcacaggaggcccttccag 53291



to top

>gb|CP000107.1| Ehrlichia canis str. Jake, complete genome
          Length = 1315030

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 613     aatatatagttgtttctatt 632
               ||||||||||||||||||||
Sbjct: 1291913 aatatatagttgtttctatt 1291894



to top

>gb|AC092899.6| Homo sapiens 3 BAC RP11-329N5 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 42216

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 622  ttgtttctattcagctttcc 641
            ||||||||||||||||||||
Sbjct: 7139 ttgtttctattcagctttcc 7158



to top

>emb|AL139010.29| Human DNA sequence from clone RP11-444M10 on chromosome 1 Contains the
             3' end of a novel gene, a novel gene and the KIRREL gene
             for kin of IRRE like (Drosophila), complete sequence
          Length = 189477

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 584   ttatctaagcccctccctgc 603
             ||||||||||||||||||||
Sbjct: 71423 ttatctaagcccctccctgc 71442



to top

>emb|BX572096.1| Prochlorococcus marinus MIT9313 complete genome; segment 2/7
          Length = 349323

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 181  gagctcaagaagatagtcccggacgccc 208
            |||||||||||||||||| ||| |||||
Sbjct: 2343 gagctcaagaagatagtcgcggccgccc 2316



to top

>gb|AC012325.9| Homo sapiens chromosome 16 clone RP11-93H5, complete sequence
          Length = 204524

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 104    tgggaaaggccaagggggtggtgg 127
              ||||||||||||||| ||||||||
Sbjct: 142993 tgggaaaggccaaggtggtggtgg 143016



to top

>gb|AC007249.5| Homo sapiens BAC clone RP11-320M2 from 2, complete sequence
          Length = 200491

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 162    ggtgctgaggaggctgagggagct 185
              |||||||||||||||| |||||||
Sbjct: 187175 ggtgctgaggaggctgtgggagct 187152



to top

>gb|AC132186.3| Homo sapiens chromosome 16 clone CTD-2258A20, complete sequence
          Length = 157833

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 104   tgggaaaggccaagggggtggtgg 127
             ||||||||||||||| ||||||||
Sbjct: 52155 tgggaaaggccaaggtggtggtgg 52178



to top

>emb|AL732501.8| Mouse DNA sequence from clone RP23-325I22 on chromosome X, complete
              sequence
          Length = 206856

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 612    gaatatatagttgtttctat 631
              ||||||||||||||||||||
Sbjct: 111098 gaatatatagttgtttctat 111079



to top

>dbj|AB088224.1| Streptomyces rochei plasmid pSLA2-L DNA, complete sequence
          Length = 210614

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 198    cccggacgcccgggacgccg 217
              ||||||||||||||||||||
Sbjct: 169424 cccggacgcccgggacgccg 169443



to top

>ref|NM_013058.2| Rattus norvegicus inhibitor of DNA binding 3 (Id3), mRNA
 gb|BC064658.1| Rattus norvegicus inhibitor of DNA binding 3, mRNA (cDNA clone
           MGC:72531 IMAGE:5623701), complete cds
          Length = 983

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 438 ctcgtgtaccccccacaccc 457
           ||||||||||||||||||||
Sbjct: 731 ctcgtgtaccccccacaccc 712



to top

>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 331     ccgtctcggtccggcccacc 350
               ||||||||||||||||||||
Sbjct: 2157991 ccgtctcggtccggcccacc 2157972



to top

>emb|AL390778.31| Human DNA sequence from clone RP11-399H11 on chromosome 9 Contains the 3'
              end of the OLFM1 gene for olfactomedin 1, two putative
              novel transcripts and two CpG islands, complete sequence
          Length = 221372

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 161    tggtgctgaggaggctgagg 180
              ||||||||||||||||||||
Sbjct: 149964 tggtgctgaggaggctgagg 149983



to top

>emb|AJ812656.1| Acinetobacter sp. 93A2 partial 16S rRNA gene, strain 93A2
          Length = 1433

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 502  gtcacacatgggagtttgtt 521
            ||||||||||||||||||||
Sbjct: 1355 gtcacacatgggagtttgtt 1374



to top

>emb|AL627342.15| Mouse DNA sequence from clone RP23-281G20 on chromosome 4, complete
             sequence
          Length = 84122

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 154   cagcacatggtgctgaggaggctg 177
             |||||||||||||||||| |||||
Sbjct: 70105 cagcacatggtgctgaggtggctg 70128


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 103,179,664
Number of extensions: 6333769
Number of successful extensions: 123131
Number of sequences better than 10.0: 43
Number of HSP's gapped: 123128
Number of HSP's successfully gapped: 52
Length of query: 660
Length of database: 18,610,659,111
Length adjustment: 22
Effective length of query: 638
Effective length of database: 18,508,616,841
Effective search space: 11808497544558
Effective search space used: 11808497544558
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
to top