ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf89k16 |
|---|---|
| Clone Library Name | barley_pub |
>Q9P305:IGO2_YEAST Protein IGO2 - Saccharomyces cerevisiae (Baker's yeast)| Length = 131 Score = 35.4 bits (80), Expect = 0.26 Identities = 19/40 (47%), Positives = 24/40 (60%) Frame = +1 Query: 256 QEQVIKKKFGGLIPKKPPLISKDHERAYFDSADWALGKSG 375 QE + K +G L KK L K +R YFDS D+AL K+G Sbjct: 33 QELKLYKMYGKLPSKKDLLRHKMQDRQYFDSGDYALKKAG 72
>Q6P5L3:RL19_DANRE 60S ribosomal protein L19 - Danio rerio (Zebrafish) (Brachydanio| rerio) Length = 196 Score = 33.1 bits (74), Expect = 1.3 Identities = 23/71 (32%), Positives = 32/71 (45%) Frame = +1 Query: 214 MDQSGDNAMPSAQQQEQVIKKKFGGLIPKKPPLISKDHERAYFDSADWALGKSGQQGVAK 393 +D + N + +A ++Q+ K GLI KKP + H RA A K GV K Sbjct: 24 LDPNETNEIANANSRQQIRKLVKDGLIIKKPVTV---HSRARCRKNTLARRKGRHMGVGK 80 Query: 394 PKGPLEALRPK 426 KG A P+ Sbjct: 81 RKGTANARMPE 91
>P79058:YF9G_SCHPO Uncharacterized protein C10F6.16 - Schizosaccharomyces pombe| (Fission yeast) Length = 139 Score = 32.7 bits (73), Expect = 1.7 Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%) Frame = +1 Query: 256 QEQVIKKKFGGLIPKKPPLISKDHE-RAYFDSADWALGKSGQ 378 +EQ + + +G L +K L+ K + R YFDS D+AL K+G+ Sbjct: 33 EEQKLFRLYGRLPQRKDLLVQKLQQGRKYFDSGDYALNKAGK 74
>Q811B1:XYLT1_MOUSE Xylosyltransferase 1 - Mus musculus (Mouse)| Length = 953 Score = 31.6 bits (70), Expect = 3.8 Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 1/83 (1%) Frame = +1 Query: 193 NVGNSEPMD-QSGDNAMPSAQQQEQVIKKKFGGLIPKKPPLISKDHERAYFDSADWALGK 369 N NS P D ++ DN+ + + Q+Q K + KKPP K+H + D+ D G+ Sbjct: 144 NNENSVPKDFENVDNSNFAPRTQKQ----KHQPELAKKPPSRQKEHLQRKLDALDKRQGQ 199 Query: 370 SGQQGVAKPKGPLEALRPKLQPT 438 S KGP E L P+ + T Sbjct: 200 S-----VLGKGPKEVLPPREKAT 217
>Q7ZYS1:RL19_XENLA 60S ribosomal protein L19 - Xenopus laevis (African clawed frog)| Length = 197 Score = 31.6 bits (70), Expect = 3.8 Identities = 21/71 (29%), Positives = 32/71 (45%) Frame = +1 Query: 214 MDQSGDNAMPSAQQQEQVIKKKFGGLIPKKPPLISKDHERAYFDSADWALGKSGQQGVAK 393 +D + N + +A ++Q+ K GLI +KP + H RA A K G+ K Sbjct: 24 LDPNETNEIANANSRQQIRKLVKDGLIIRKPVTV---HSRARCRKNTLARRKGRHMGIGK 80 Query: 394 PKGPLEALRPK 426 KG A P+ Sbjct: 81 RKGTANARMPE 91
>P53897:YNP7_YEAST Uncharacterized protein YNL157W - Saccharomyces cerevisiae (Baker's| yeast) Length = 168 Score = 31.2 bits (69), Expect = 5.0 Identities = 19/54 (35%), Positives = 25/54 (46%) Frame = +1 Query: 220 QSGDNAMPSAQQQEQVIKKKFGGLIPKKPPLISKDHERAYFDSADWALGKSGQQ 381 +SG E + K +G L KK +R YFDS D+AL K+G Q Sbjct: 22 ESGTIDTSKFSPNEMKLYKMYGKLPSKKDIFKHTMQKRKYFDSGDYALQKAGIQ 75
>P84100:RL19_RAT 60S ribosomal protein L19 - Rattus norvegicus (Rat)| Length = 196 Score = 31.2 bits (69), Expect = 5.0 Identities = 21/71 (29%), Positives = 32/71 (45%) Frame = +1 Query: 214 MDQSGDNAMPSAQQQEQVIKKKFGGLIPKKPPLISKDHERAYFDSADWALGKSGQQGVAK 393 +D + N + +A ++Q+ K GLI +KP + H RA A K G+ K Sbjct: 24 LDPNETNEIANANSRQQIRKLIKDGLIIRKPVTV---HSRARCRKNTLARRKGRHMGIGK 80 Query: 394 PKGPLEALRPK 426 KG A P+ Sbjct: 81 RKGTANARMPE 91
>Q5RB99:RL19_PONPY 60S ribosomal protein L19 - Pongo pygmaeus (Orangutan)| Length = 196 Score = 31.2 bits (69), Expect = 5.0 Identities = 21/71 (29%), Positives = 32/71 (45%) Frame = +1 Query: 214 MDQSGDNAMPSAQQQEQVIKKKFGGLIPKKPPLISKDHERAYFDSADWALGKSGQQGVAK 393 +D + N + +A ++Q+ K GLI +KP + H RA A K G+ K Sbjct: 24 LDPNETNEIANANSRQQIRKLIKDGLIIRKPVTV---HSRARCRKNTLARRKGRHMGIGK 80 Query: 394 PKGPLEALRPK 426 KG A P+ Sbjct: 81 RKGTANARMPE 91
>P84099:RL19_MOUSE 60S ribosomal protein L19 - Mus musculus (Mouse)| Length = 196 Score = 31.2 bits (69), Expect = 5.0 Identities = 21/71 (29%), Positives = 32/71 (45%) Frame = +1 Query: 214 MDQSGDNAMPSAQQQEQVIKKKFGGLIPKKPPLISKDHERAYFDSADWALGKSGQQGVAK 393 +D + N + +A ++Q+ K GLI +KP + H RA A K G+ K Sbjct: 24 LDPNETNEIANANSRQQIRKLIKDGLIIRKPVTV---HSRARCRKNTLARRKGRHMGIGK 80 Query: 394 PKGPLEALRPK 426 KG A P+ Sbjct: 81 RKGTANARMPE 91
>Q8HXN9:RL19_MACFA 60S ribosomal protein L19 - Macaca fascicularis (Crab eating| macaque) (Cynomolgus monkey) Length = 196 Score = 31.2 bits (69), Expect = 5.0 Identities = 21/71 (29%), Positives = 32/71 (45%) Frame = +1 Query: 214 MDQSGDNAMPSAQQQEQVIKKKFGGLIPKKPPLISKDHERAYFDSADWALGKSGQQGVAK 393 +D + N + +A ++Q+ K GLI +KP + H RA A K G+ K Sbjct: 24 LDPNETNEIANANSRQQIRKLIKDGLIIRKPVTV---HSRARCRKNTLARRKGRHMGIGK 80 Query: 394 PKGPLEALRPK 426 KG A P+ Sbjct: 81 RKGTANARMPE 91
>P84098:RL19_HUMAN 60S ribosomal protein L19 - Homo sapiens (Human)| Length = 196 Score = 31.2 bits (69), Expect = 5.0 Identities = 21/71 (29%), Positives = 32/71 (45%) Frame = +1 Query: 214 MDQSGDNAMPSAQQQEQVIKKKFGGLIPKKPPLISKDHERAYFDSADWALGKSGQQGVAK 393 +D + N + +A ++Q+ K GLI +KP + H RA A K G+ K Sbjct: 24 LDPNETNEIANANSRQQIRKLIKDGLIIRKPVTV---HSRARCRKNTLARRKGRHMGIGK 80 Query: 394 PKGPLEALRPK 426 KG A P+ Sbjct: 81 RKGTANARMPE 91
>Q3T0W9:RL19_BOVIN 60S ribosomal protein L19 - Bos taurus (Bovine)| Length = 196 Score = 31.2 bits (69), Expect = 5.0 Identities = 21/71 (29%), Positives = 32/71 (45%) Frame = +1 Query: 214 MDQSGDNAMPSAQQQEQVIKKKFGGLIPKKPPLISKDHERAYFDSADWALGKSGQQGVAK 393 +D + N + +A ++Q+ K GLI +KP + H RA A K G+ K Sbjct: 24 LDPNETNEIANANSRQQIRKLIKDGLIIRKPVTV---HSRARCRKNTLARRKGRHMGIGK 80 Query: 394 PKGPLEALRPK 426 KG A P+ Sbjct: 81 RKGTANARMPE 91
>O84955:BLOK_PSEAE Beta-lactamase OXA-20 precursor - Pseudomonas aeruginosa| Length = 266 Score = 31.2 bits (69), Expect = 5.0 Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 20/92 (21%) Frame = +1 Query: 193 NVGNSEPMDQSGD-----NAMPSAQQQEQVIKKKFGGLIPKKPPLISKDHERAYFD---- 345 N GN++P +SGD N SA +Q ++KK + +P +H+R D Sbjct: 145 NYGNADPSTKSGDYWIDGNLAISANEQISILKKLYRNELP-----FRVEHQRLVKDLMIV 199 Query: 346 --SADWAL----GKSGQQG-----VAKPKGPL 408 DW L G GQ G V P GP+ Sbjct: 200 EAKRDWILRAKTGWDGQMGWWVGWVEWPTGPV 231
>Q7NNL0:TILS_GLOVI tRNA(Ile)-lysidine synthase - Gloeobacter violaceus| Length = 325 Score = 30.4 bits (67), Expect = 8.5 Identities = 25/73 (34%), Positives = 28/73 (38%), Gaps = 15/73 (20%) Frame = -1 Query: 268 LLVPVAEPRAWHYLHFGP*VQNFQRYHAQQHWRPSSP-----------TW*VT----VTE 134 LLV +A R H LH G H WRP S W V + Sbjct: 46 LLVDLAPERGLH-LHVG---------HLDHRWRPGSERDAQRVAVLCNVWGVPFHLEIAR 95 Query: 133 TPAAREASARRWR 95 TP A EA+AR WR Sbjct: 96 TPPASEAAARAWR 108
>Q90YU8:RL19_ICTPU 60S ribosomal protein L19 - Ictalurus punctatus (Channel catfish)| Length = 196 Score = 30.4 bits (67), Expect = 8.5 Identities = 21/71 (29%), Positives = 31/71 (43%) Frame = +1 Query: 214 MDQSGDNAMPSAQQQEQVIKKKFGGLIPKKPPLISKDHERAYFDSADWALGKSGQQGVAK 393 +D + N + +A ++ + K GLI KKP + H RA A K G+ K Sbjct: 24 LDPNETNEIANANSRQAIRKLVKDGLIIKKPVTV---HSRARCRKNTLARRKGRHMGIGK 80 Query: 394 PKGPLEALRPK 426 KG A P+ Sbjct: 81 RKGTANARMPE 91 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 130,452,560 Number of extensions: 2683555 Number of successful extensions: 7001 Number of sequences better than 10.0: 15 Number of HSP's gapped: 6999 Number of HSP's successfully gapped: 15 Length of query: 267 Length of database: 100,686,439 Length adjustment: 111 Effective length of query: 156 Effective length of database: 70,239,694 Effective search space: 10957392264 Effective search space used: 10957392264 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
