>LOC_Os03g38980:12003.t03341:unspliced-genomic lysyl-tRNA synthetase, putative, expressed|
          Length = 8380
 Score = 41.8 bits (85), Expect(4) = 2e-12
 Identities = 15/31 (48%), Positives = 21/31 (67%)
 Frame = -1 / +3

                                           
Query: 1765 MICLCLQGRVMIKRVSSSKLFCYDLYGNGRR 1673
            ++   ++GR+M KR  SSKL  YDLYG G +
Sbjct: 1053 LLLFFIKGRIMTKRAQSSKLLFYDLYGGGEK 1145



 Score = 40.9 bits (83), Expect(4) = 2e-12
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = -1 / +3

                                      
Query: 1924 LELAGIDPYPHKLKVTISLADYVTKY 1847
            L+  G++PYPHK    I++ADY+ KY
Sbjct: 852  LKATGVNPYPHKFLANITVADYIEKY 929



 Score = 39.6 bits (80), Expect(4) = 2e-12
 Identities = 14/24 (58%), Positives = 20/24 (83%)
 Frame = -3 / +3

                                    
Query: 683  RGELSIFGRNLILLSPFLHMLPNR 612
            RGELSIF + +++LSP LHM+P +
Sbjct: 2436 RGELSIFPKKIVVLSPCLHMMPRQ 2507



 Score = 26.3 bits (51), Expect(4) = 2e-12
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1 / +1

                             
Query: 1501 SEMAKTEFHKFHNVLKR 1451
            SE+   EF KFH+ LKR
Sbjct: 2023 SELEDNEFIKFHSTLKR 2073



 Score = 33.6 bits (67), Expect = 7.8
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = -3 / +2

                                  
Query: 1745 REGHD*ESFLIQTLLLRSLWQW 1680
            RE HD ES + Q L+L SLW W
Sbjct: 1073 REDHDQESAIFQALIL*SLWWW 1138

>LOC_Os02g07850:12002.t00681:unspliced-genomic conserved hypothetical protein|
          Length = 2909

 Score = 50.1 bits (103), Expect(2) = 7e-10
 Identities = 20/32 (62%), Positives = 27/32 (84%)
 Frame = +1 / +1

                                           
Query: 259 IRDIKGKFLKITETADKVLVLPELVPYQKKGT 354
           +RDI+G F+KI +TA+ V VL E+VPYQ+KGT
Sbjct: 865 MRDIQGHFVKIVDTANHVSVLLEVVPYQRKGT 960



 Score = 35.4 bits (71), Expect(2) = 7e-10
 Identities = 18/40 (45%), Positives = 22/40 (55%)
 Frame = +3 / +1

                                                   
Query: 123 EKKVVDVSNKLRVRTSAEIEQQSTSGRFTMIVNRPVATGQ 242
           EK V  V N+LRV  S EIEQQST G    +   P +  +
Sbjct: 742 EKTVDRVKNELRVVASEEIEQQSTPGFTVYVDRPPASMAE 861



 Score = 44.1 bits (90), Expect(3) = 9e-07
 Identities = 17/32 (53%), Positives = 24/32 (75%)
 Frame = -2 / -3

                                           
Query: 354 CTFLLVRDELRQH*DLVGGFGNLQELALDIPY 259
           CTF LV D+L +  D+VGG  +L E+ALD+P+
Sbjct: 960 CTFPLVGDDLEEDGDVVGGVDDLHEVALDVPH 865



 Score = 24.9 bits (48), Expect(3) = 9e-07
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = -1 / -1

                      
Query: 199 PEVLCCSISAL 167
           P VLCCSIS+L
Sbjct: 818 PGVLCCSISSL 786



 Score = 22.1 bits (42), Expect(3) = 9e-07
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -2 / -3

                      
Query: 258 YDIRHAGRWPL 226
           + +RHA RWP+
Sbjct: 867 HGLRHARRWPV 835



 Score = 36.8 bits (74), Expect(2) = 0.025
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = +3 / +3

                                               
Query: 249 GCHNKGYQGQVLEDYRNRRQGLSAAGARPVPEERYS 356
           G  ++G+ G + ED R+R+  L     RP+PEERY+
Sbjct: 855 GGGHEGHPGPLREDRRHRQPRLRPPRGRPLPEERYT 962



 Score = 22.6 bits (43), Expect(2) = 0.025
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +3 / +3

                       
Query: 222 RPVATGQHGGCH 257
           R  ATG+HGG H
Sbjct: 831 RGPATGEHGGGH 866



 Score = 41.8 bits (85), Expect = 0.026
 Identities = 18/40 (45%), Positives = 25/40 (62%)
 Frame = -3 / -1

                                                   
Query: 353 VPFFWYGTSSGSTKTLSAVSVIFKNLPLISLIMTSAMLAG 234
           VPF W GT+S  T+T  AVS IF   P +SL+ ++ +  G
Sbjct: 959 VPFLW*GTTSRRTETWLAVSTIFTKWPWMSLMASAMLAGG 840

>LOC_Os06g35100:12006.t03207:unspliced-genomic hypothetical protein|
          Length = 976

 Score = 39.6 bits (80), Expect = 0.13
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3 / -2

                                            
Query: 2361 NCGFMCFSSFLFISQCCLHVTSIFHH*SYCKN 2456
            NC   CF +F+F+     H+  +F H S+CKN
Sbjct: 288  NCPLSCFLNFIFLQNHLNHIFLLFKHLSFCKN 193

>LOC_Os08g06890:12008.t00579:unspliced-genomic hypothetical protein|
          Length = 1769

 Score = 37.3 bits (75), Expect = 0.61
 Identities = 11/28 (39%), Positives = 21/28 (75%)
 Frame = +3 / +2

                                        
Query: 2667 VIFAHCFSMLCSALGHRFNMSLICSCRL 2750
            ++++ CF+M+ S+  H F  S+IC+CR+
Sbjct: 1454 IVYSTCFTMIISSNMHIFQFSVICACRI 1537

>LOC_Os02g48010:12002.t04385:unspliced-genomic nuclear matrix constituent protein 1, putative, expressed|
          Length = 6184

 Score = 36.8 bits (74), Expect = 0.84
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +3 / -2

                                                     
Query: 2628 SKNKQMHPLYSSPVIFAHCFSMLCSALGHRFNMSLICSCRL 2750
            S+ + +  LYSS   F+   SM+CS L    +  L CSC +
Sbjct: 3600 SERELLRILYSSISFFSCAVSMMCSCLSSSVSFKLFCSCNI 3478

>LOC_Os02g28074:12002.t02500:unspliced-genomic XRN 5-3 exonuclease N-terminus family protein, expressed|
          Length = 16540

 Score = 27.6 bits (54), Expect(2) = 1.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3 / -2

                                       
Query: 1742 EGHD*ESFLIQTLLLRSLWQWEKVQVM 1662
            E HD  S L      R+LW+WE+  V+
Sbjct: 6294 EFHDPHSELATDPTFRNLWEWEREHVV 6214



 Score = 25.4 bits (49), Expect(2) = 1.4
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -1 / -2

                           
Query: 1603 KHFFFHIVLFSASFV 1559
            KH+ F+++LF+  FV
Sbjct: 6171 KHYIFYVILFNLMFV 6127

>LOC_Os01g72940:12001.t06579:unspliced-genomic phosphatidylserine decarboxylase, putative, expressed|
          Length = 7724

 Score = 35.9 bits (72), Expect = 1.6
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3 / -2

                                                 
Query: 1203 LFKIYFLL*PPLKSTSRIQRRAQKHERKNRKEPPVAN 1313
            + +++  L PP KS  R+Q  +    R+N  +PP+ N
Sbjct: 397  VLELHIRLWPPTKSKQRVQNHSSSVHRRNESKPPIPN 287

>LOC_Os01g29050:12001.t02595:unspliced-genomic retrotransposon protein, putative, unclassified|
          Length = 6752

 Score = 35.0 bits (70), Expect = 3.0
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +3 / +1

                                           
Query: 1629 IQPVQLIPDPSHDLNLLPLP*RS*QKSLDEE 1721
            IQP +++P   +D  LLPLP RS +  +DE+
Sbjct: 793  IQPEKIVPQEYYDTRLLPLPQRSRKPLVDEQ 885

>LOC_Os06g34310:12006.t03127:unspliced-genomic retrotransposon, putative, centromere-specific|
          Length = 4217

 Score = 34.5 bits (69), Expect = 4.1
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = +3 / +1

                                           
Query: 1629 IQPVQLIPDPSHDLNLLPLP*RS*QKSLDEE 1721
            +QP + +P   +D+ LLP P RS + S+DE+
Sbjct: 655  VQPKKTVPQE*YDIRLLPFPQRSRKPSVDEQ 747

>LOC_Os04g47840:12004.t05474:unspliced-genomic expressed protein|
          Length = 712

 Score = 34.5 bits (69), Expect = 4.1
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +3 / -1

                                                     
Query: 243 HGGCHNKGYQGQVLEDYRNRRQGLSAAGARPVPEERYSQDTP 368
           HG CH +G +G+  E  R RR+  S   AR +  ++ S  TP
Sbjct: 187 HGLCHVEGTKGERKEGSRKRRRQTSKGRARRMQMKQLSSATP 62

>LOC_Os02g39050:12002.t03543:unspliced-genomic pre-mRNA-splicing factor ISY1, putative, expressed|
          Length = 2450

 Score = 34.5 bits (69), Expect = 4.1
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +1 / +3

                                     
Query: 10  RISPPDPSTNPTCGGGLPGSSAFTLP 87
           R SPP  +T+PT  GG P SSA + P
Sbjct: 243 RTSPPSAATSPTPSGGAPRSSARSAP 320

>LOC_Os01g73500:12001.t06631:unspliced-genomic expressed protein|
          Length = 3099

 Score = 34.5 bits (69), Expect = 4.1
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +1 / +3

                                               
Query: 2125 SQFCVFRSVVHDLRSW*GQTMCLHGRPYLEAFVQL 2229
            S+  VFR  +HDL  W*     L GRP    F+ L
Sbjct: 585  SERTVFRGCIHDLTDW*WHDYALLGRPVARWFLHL 689

>LOC_Os09g18480:12009.t01633:unspliced-genomic ligA, putative|
          Length = 1269

 Score = 28.6 bits (56), Expect(2) = 4.9
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3 / -3

                                        
Query: 1230 PPLKSTSRIQRRAQKHERKNRKEPPVAN 1313
            PPL       R ++ H R++ + PPVA+
Sbjct: 1174 PPLADDPPAGRHSRSHHRRSARPPPVAS 1091



 Score = 28.1 bits (55), Expect(2) = 4.9
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3 / -3

                                       
Query: 1347 RQRRYNPQRGTAKLDKHTNFPRYPIIP 1427
            R RR  P  G A L +    PR+P++P
Sbjct: 628  RPRRREPSLGRAGLSRAHAQPRHPVVP 548

>LOC_Os03g17610:12003.t01535:unspliced-genomic RHL2, putative, expressed|
          Length = 5616

 Score = 34.1 bits (68), Expect = 5.7
 Identities = 13/42 (30%), Positives = 27/42 (64%)
 Frame = +2 / +2

                                                      
Query: 758  NVISQSYISTIVSVNKIYIDAIPRSCIYQAGVMIATPRIYIL 883
            +++S+   +T +S  K Y+  +P + +Y  G ++ +PR+YIL
Sbjct: 1973 SLLSRPNTTTCMSS*KQYVAIVPCTKVYIVGYLVFSPRLYIL 2098

>LOC_Os03g09310:12003.t00784:unspliced-genomic ABI3-interacting protein 2, putative, expressed|
          Length = 4556

 Score = 34.1 bits (68), Expect = 5.7
 Identities = 9/36 (25%), Positives = 21/36 (58%)
 Frame = +1 / +1

                                                
Query: 2056 ISFDSWYMFCTLCNKVGHYVLFHSQFCVFRSVVHDL 2163
            + F  W M+ ++C+   + V+ H  F  ++S++H +
Sbjct: 3217 VLFIFWLMYLSICSPPPYSVVIHGSFLFYKSIIHGM 3324

>LOC_Os06g07250:12006.t00608:unspliced-genomic protein GOS9, putative, expressed|
          Length = 5169

 Score = 30.9 bits (61), Expect(2) = 6.9
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2 / -1

                             
Query: 881  LCVSVYYNKYIHMCLYL 931
            +C+ VY   YIHMC+Y+
Sbjct: 2253 ICIYVYTYMYIHMCIYV 2203



 Score = 27.2 bits (53), Expect(2) = 6.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1 / -3

                                    
Query: 2812 ICFVFPMIVAVYQRVCVCVFSFGY 2883
            IC    + V VY  VCVCV+ + Y
Sbjct: 1975 ICICVYIYVYVYVCVCVCVYIYIY 1904

>LOC_Os12g07480:12012.t00632:unspliced-genomic TCP family transcription factor containing protein, expressed|
          Length = 2045

 Score = 33.6 bits (67), Expect = 7.8
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -3 / +2

                                
Query: 1619 EIGILEAFFFSYCTFFCIIC 1560
            ++ +L  FF+ YC +FCI+C
Sbjct: 1526 QLALLIKFFWGYCFYFCIVC 1585

>LOC_Os08g26400:12008.t02406:unspliced-genomic retrotransposon protein, putative, unclassified|
          Length = 2298

 Score = 33.6 bits (67), Expect = 7.8
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3 / +1

                                           
Query: 1629 IQPVQLIPDPSHDLNLLPLP*RS*QKSLDEE 1721
            +QP + +P   +D  LLP P RS + S+DE+
Sbjct: 1312 VQPEKTVPPEYYDTRLLPFPQRSRKPSVDEQ 1404

>LOC_Os07g42300:12007.t03884:unspliced-genomic elongation factor 1-delta 1, putative, expressed|
          Length = 3125

 Score = 33.6 bits (67), Expect = 7.8
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3 / +2

                                       
Query: 2358 INCGFMCFSSFLFISQCCLHVTSIFHH 2438
            +NC  M F++++F+ Q C   + I+HH
Sbjct: 1406 VNCDLMLFANYVFVVQWCWLPSLIYHH 1486

>LOC_Os07g08400:12007.t00715:unspliced-genomic ATP binding protein, putative, expressed|
          Length = 6391

 Score = 33.6 bits (67), Expect = 7.8
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = -3 / +2

                                        
Query: 1601 AFFFSYCTFFCIICLPSPKYMEVISSFL 1518
            +FF   C+   ++C+P+P ++E+I S +
Sbjct: 5048 SFFVQLCSLLLVLCIPAPIFLELIYSLM 5131

>LOC_Os01g37130:12001.t03261:unspliced-genomic protein phosphatase 2C PPH1, putative, expressed|
          Length = 3849

 Score = 33.6 bits (67), Expect = 7.8
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3 / +2

                                           
Query: 1652 RYQLYRLDQDDEIGILEAFFFSYCTFFCIIC 1560
            RY++Y L   + I  L A +F YC FF  +C
Sbjct: 2981 RYEVYFLSNQELIMFLFATYF*YCLFFICLC 3073

>LOC_Os11g27329:12011.t004352:unspliced-genomic serine carboxypeptidase 1 precursor, putative, expressed|
          Length = 31581

 Score = 33.6 bits (67), Expect = 7.8
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1 / -1

                                
Query: 2458  LFLQ*LQWWKIEVTCRQHW 2402
             ++ +*  WWK +V CR HW
Sbjct: 15450 MYTR*RNWWKAKVNCRPHW 15394

>LOC_Os07g32900:12007.t02971:unspliced-genomic rf1 protein, mitochondrial precursor, putative, expressed|
          Length = 4827

 Score = 32.7 bits (65), Expect(2) = 8.8
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1 / +2

                                 
Query: 4  AARISPPDPSTNPTCGGGLPGSS 72
          +AR+ PP P + P  GG +PGS+
Sbjct: 20 SARLPPPPPPSPPPAGGPIPGSA 88



 Score = 24.9 bits (48), Expect(2) = 8.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2 / +1

                                   
Query: 2525 FTFLDENYCFLTKNEDKFIVHMK 2593
            +T L + YC + K  + F+VH K
Sbjct: 1378 YTVLIDGYCKVGKMTEAFLVHNK 1446

>LOC_Os01g27900:12001.t02489:unspliced-genomic retrotransposon, putative, centromere-specific|
          Length = 3518

 Score = 31.3 bits (62), Expect(2) = 8.9
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3 / +2

                                           
Query: 1629 IQPVQLIPDPSHDLNLLPLP*RS*QKSLDEE 1721
            +QP + +P    D  LLP P RS + S+DE+
Sbjct: 1640 VQPEKSVPQEYCDTRLLPFPQRSRKPSVDEQ 1732



 Score = 25.8 bits (50), Expect(2) = 8.9
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1 / +3

                                 
Query: 307  KVLVLPELVPYQKKGTVRTHL 369
            ++L L ELV YQKK  + T L
Sbjct: 1569 RILTLQELVGYQKKRHLMTRL 1631


  Database: tigr.seq.out
    Posted date:  Jul 20, 2007  8:58 AM
  Number of letters in database: 166,841,660
  Number of sequences in database:  56,278
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Sequences: 56278
Number of Hits to DB: 1,234,409,630
Number of extensions: 20278447
Number of successful extensions: 79676
Number of sequences better than 10.0: 24
Length of query: 1016
Length of database: 55,613,886
Length adjustment: 53
Effective length of query: 963
Effective length of database: 52,631,152
Effective search space: 50683799376
Effective search space used: 50683799376
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)