ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf89h14 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001056640.1| Oryza sativa (japonica cultivar-group) Os03g0348900 (Os03g0348900) mRNA, complete cds Length = 1059 Score = 545 bits (275), Expect = e-151 Identities = 518/599 (86%) Strand = Plus / Plus Query: 147 cacgggttcgccaagatgggcttcgggtgcaagcactacaggaggcggtgcaggatccgg 206 ||||| |||| || |||||| || || |||||||||||||||||| |||||||||||||| Sbjct: 70 cacggattcggcaggatgggatttggatgcaagcactacaggaggaggtgcaggatccgg 129 Query: 207 gcgccatgctgcaacgacgtcttccactgccgccattgccacaacgactccacgaaagac 266 ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 130 gcgccgtgctgcaacgacgtcttccactgccgccattgccacaacgagtccacgaaagac 189 Query: 267 gggcacgagctcgaccgccatgcagtccaatcggtcatatgtctcgtctgtgacaccgag 326 || ||||||||||| || || || || ||||||| || |||||||||||||||||||| Sbjct: 190 ggccacgagctcgatcggcacgcggttgaatcggttatctgtctcgtctgtgacaccgaa 249 Query: 327 cagccggtggcgcaagtgtgcagcaactgcggcgtgtgcatgggggactacttctgccgg 386 |||||||| |||||||||||| |||||||||||| |||||||| || ||||||||| | Sbjct: 250 cagccggttgcgcaagtgtgctacaactgcggcgtttgcatgggcgagtacttctgcagc 309 Query: 387 gcgtgcaaattcttcgacgacgacgtcgacaaggagcaataccactgcaaagactgcggc 446 |||||||||||||||||||||||||| |||| ||| || | ||||||| |||| |||||| Sbjct: 310 gcgtgcaaattcttcgacgacgacgttgacagggaacacttccactgccaagattgcggc 369 Query: 447 atctgcagggttggaggcaaggacaacttcttccactgccacaagtgcggatcgtgctac 506 |||||||| |||||||| ||||| ||||||||||||||| | || || ||||| |||||| Sbjct: 370 atctgcagagttggagggaaggataacttcttccactgcgaaaaatgtggatcatgctac 429 Query: 507 tcggtgaccctcagggacaagcatgtgtgcatcgaggacgcgatgaagaacaactgcccg 566 ||||| | ||| | |||||||| ||||||||| || | ||||||||||||||||| Sbjct: 430 tcggtcagcctgcgcgacaagcactgctgcatcgagaactccatgaagaacaactgcccc 489 Query: 567 atctgctacgagtacctgttcgactccctgagggaggcgtcagtgctgaggtgcggccac 626 ||||| |||||||| ||||| ||||| || |||||| |||| ||||| || || || ||| Sbjct: 490 atctgttacgagtatctgtttgactctctaagggagacgtccgtgctcagatgtgggcac 549 Query: 627 accatgcacctgcactgcttccacgagatgctcaagcacgacaagttcacttgccccatg 686 || ||||||||||| ||||||||||||||||| ||||||||||||||| |||| ||||| Sbjct: 550 acgatgcacctgcaatgcttccacgagatgctgaagcacgacaagttctcttgtcccata 609 Query: 687 tgctccgtgtccatctttgacatggagaaattcttgagggccttggatgccgagattga 745 ||||| || | |||||||||||||| || ||||||||||| ||||| || |||||||| Sbjct: 610 tgctcgatgcctatctttgacatggacaagttcttgagggctttggacgctgagattga 668 Score = 83.8 bits (42), Expect = 1e-12 Identities = 45/46 (97%) Strand = Plus / Plus Query: 760 acatgggaaagggatggatcgtgtgcaacgactgctgggacacgac 805 ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 692 acatgggaaagggatggatcgtgtgcaacgactgcagggacacgac 737 Score = 44.1 bits (22), Expect = 1.0 Identities = 34/38 (89%) Strand = Plus / Plus Query: 837 aagtgttgccactgccagtcctacaacacctgcagggt 874 ||||| ||||| |||||||| |||||||||||||||| Sbjct: 766 aagtgctgccattgccagtctcacaacacctgcagggt 803
>dbj|AK059950.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-B01, full insert sequence Length = 1059 Score = 545 bits (275), Expect = e-151 Identities = 518/599 (86%) Strand = Plus / Plus Query: 147 cacgggttcgccaagatgggcttcgggtgcaagcactacaggaggcggtgcaggatccgg 206 ||||| |||| || |||||| || || |||||||||||||||||| |||||||||||||| Sbjct: 70 cacggattcggcaggatgggatttggatgcaagcactacaggaggaggtgcaggatccgg 129 Query: 207 gcgccatgctgcaacgacgtcttccactgccgccattgccacaacgactccacgaaagac 266 ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 130 gcgccgtgctgcaacgacgtcttccactgccgccattgccacaacgagtccacgaaagac 189 Query: 267 gggcacgagctcgaccgccatgcagtccaatcggtcatatgtctcgtctgtgacaccgag 326 || ||||||||||| || || || || ||||||| || |||||||||||||||||||| Sbjct: 190 ggccacgagctcgatcggcacgcggttgaatcggttatctgtctcgtctgtgacaccgaa 249 Query: 327 cagccggtggcgcaagtgtgcagcaactgcggcgtgtgcatgggggactacttctgccgg 386 |||||||| |||||||||||| |||||||||||| |||||||| || ||||||||| | Sbjct: 250 cagccggttgcgcaagtgtgctacaactgcggcgtttgcatgggcgagtacttctgcagc 309 Query: 387 gcgtgcaaattcttcgacgacgacgtcgacaaggagcaataccactgcaaagactgcggc 446 |||||||||||||||||||||||||| |||| ||| || | ||||||| |||| |||||| Sbjct: 310 gcgtgcaaattcttcgacgacgacgttgacagggaacacttccactgccaagattgcggc 369 Query: 447 atctgcagggttggaggcaaggacaacttcttccactgccacaagtgcggatcgtgctac 506 |||||||| |||||||| ||||| ||||||||||||||| | || || ||||| |||||| Sbjct: 370 atctgcagagttggagggaaggataacttcttccactgcgaaaaatgtggatcatgctac 429 Query: 507 tcggtgaccctcagggacaagcatgtgtgcatcgaggacgcgatgaagaacaactgcccg 566 ||||| | ||| | |||||||| ||||||||| || | ||||||||||||||||| Sbjct: 430 tcggtcagcctgcgcgacaagcactgctgcatcgagaactccatgaagaacaactgcccc 489 Query: 567 atctgctacgagtacctgttcgactccctgagggaggcgtcagtgctgaggtgcggccac 626 ||||| |||||||| ||||| ||||| || |||||| |||| ||||| || || || ||| Sbjct: 490 atctgttacgagtatctgtttgactctctaagggagacgtccgtgctcagatgtgggcac 549 Query: 627 accatgcacctgcactgcttccacgagatgctcaagcacgacaagttcacttgccccatg 686 || ||||||||||| ||||||||||||||||| ||||||||||||||| |||| ||||| Sbjct: 550 acgatgcacctgcaatgcttccacgagatgctgaagcacgacaagttctcttgtcccata 609 Query: 687 tgctccgtgtccatctttgacatggagaaattcttgagggccttggatgccgagattga 745 ||||| || | |||||||||||||| || ||||||||||| ||||| || |||||||| Sbjct: 610 tgctcgatgcctatctttgacatggacaagttcttgagggctttggacgctgagattga 668 Score = 83.8 bits (42), Expect = 1e-12 Identities = 45/46 (97%) Strand = Plus / Plus Query: 760 acatgggaaagggatggatcgtgtgcaacgactgctgggacacgac 805 ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 692 acatgggaaagggatggatcgtgtgcaacgactgcagggacacgac 737 Score = 44.1 bits (22), Expect = 1.0 Identities = 34/38 (89%) Strand = Plus / Plus Query: 837 aagtgttgccactgccagtcctacaacacctgcagggt 874 ||||| ||||| |||||||| |||||||||||||||| Sbjct: 766 aagtgctgccattgccagtctcacaacacctgcagggt 803
>dbj|AK073680.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033054M17, full insert sequence Length = 1232 Score = 389 bits (196), Expect = e-104 Identities = 436/512 (85%), Gaps = 3/512 (0%) Strand = Plus / Plus Query: 161 gatgggcttcgggtgcaagcactacaggaggcggtgcaggatccgggcgccatgctgcaa 220 |||||| || || |||||||||||||||||| |||||| |||||||||||| |||||||| Sbjct: 137 gatgggatttggatgcaagcactacaggaggaggtgcacgatccgggcgccgtgctgcaa 196 Query: 221 cgacgtcttccactgccgccattgccacaacgactccacgaaagacgggcacgagctcga 280 ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct: 197 cgacgtcttccactgccgccattgccacaacgagtccacgaaagacggccacgagctcga 256 Query: 281 ccgccatgcagtccaatcggtcatatgtctcgtctgtgacaccgagcagccggtggcgca 340 || || || || ||||||| || |||||||||||||||||||| |||||||| ||||| Sbjct: 257 tcggcacgcggttgaatcggttatctgtctcgtctgtgacaccgaacagccggttgcgca 316 Query: 341 agtgtgcagcaactgcggcgtgtgcatgggggactacttctgccgggcgtgcaaattctt 400 ||||||| ||||||||| || |||||||| || ||||| ||| | |||||||||||||| Sbjct: 317 agtgtgctacaactgcggtgtttgcatgggcgagtacttatgcagcgcgtgcaaattctt 376 Query: 401 cgacgacgacgtcgacaaggagcaataccactgcaaagactgcggcatctgcagggttgg 460 |||| ||||||| |||| ||| || |||||| |||| ||||||||||||| ||||| Sbjct: 377 cgaccacgacgttgacagggaacatcttcactgccaagattgcggcatctgcatagttgg 436 Query: 461 aggcaaggacaacttcttccactgccacaagtgcggatcgtgctactcggtgaccctcag 520 ||| ||||| ||||||||||||||| | || || ||||| ||||||||||| | ||| | Sbjct: 437 agggaaggataacttcttccactgcgaaaaatgtggatcatgctactcggtcagcctgcg 496 Query: 521 ggacaagcatgtgtgcatcgaggacgcgatgaagaacaactgcccgatctgctacgagta 580 || |||| |||||||||| || | ||||||||||||||||| ||| |||||||||| Sbjct: 497 cga-tagcactggtgcatcgagaactccatgaagaacaactgccccatcagctacgagta 555 Query: 581 cctgttcgactccctgagggaggcgtcagtgctgaggtgcggccacaccatgcacctgca 640 ||||| ||||| || | |||| |||| ||||| || || || ||||| ||||||||||| Sbjct: 556 tctgtttgactctct-aaggagacgtccgtgctcagatgtgggcacacgatgcacctgca 614 Query: 641 ctgcttccacgagatgctcaagcacgacaagt 672 ||| ||||||||||||| ||||||||||||| Sbjct: 615 atgc-tccacgagatgctgaagcacgacaagt 645 Score = 83.8 bits (42), Expect = 1e-12 Identities = 45/46 (97%) Strand = Plus / Plus Query: 760 acatgggaaagggatggatcgtgtgcaacgactgctgggacacgac 805 ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 873 acatgggaaagggatggatcgtgtgcaacgactgcagggacacgac 918 Score = 54.0 bits (27), Expect = 0.001 Identities = 42/47 (89%) Strand = Plus / Plus Query: 699 atctttgacatggagaaattcttgagggccttggatgccgagattga 745 |||||||||||||| || ||||||||||| ||||| || |||||||| Sbjct: 803 atctttgacatggacaagttcttgagggctttggacgctgagattga 849
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 149 bits (75), Expect = 2e-32 Identities = 84/87 (96%) Strand = Plus / Minus Query: 174 tgcaagcactacaggaggcggtgcaggatccgggcgccatgctgcaacgacgtcttccac 233 |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| Sbjct: 13069238 tgcaagcactacaggaggaggtgcaggatccgggcgccgtgctgcaacgacgtcttccac 13069179 Query: 234 tgccgccattgccacaacgactccacg 260 |||||||||||||||||||| |||||| Sbjct: 13069178 tgccgccattgccacaacgagtccacg 13069152 Score = 97.6 bits (49), Expect = 8e-17 Identities = 70/77 (90%) Strand = Plus / Minus Query: 336 gcgcaagtgtgcagcaactgcggcgtgtgcatgggggactacttctgccgggcgtgcaaa 395 |||||||||||| |||||||||||| |||||||| || ||||||||| | ||||||||| Sbjct: 13068797 gcgcaagtgtgctacaactgcggcgtttgcatgggcgagtacttctgcagcgcgtgcaaa 13068738 Query: 396 ttcttcgacgacgacgt 412 ||||||||||||||||| Sbjct: 13068737 ttcttcgacgacgacgt 13068721 Score = 87.7 bits (44), Expect = 7e-14 Identities = 83/96 (86%) Strand = Plus / Minus Query: 577 agtacctgttcgactccctgagggaggcgtcagtgctgaggtgcggccacaccatgcacc 636 |||| ||||| ||||| || |||||| |||| ||||| || || || ||||| ||||||| Sbjct: 13068118 agtatctgtttgactctctaagggagacgtccgtgctcagatgtgggcacacgatgcacc 13068059 Query: 637 tgcactgcttccacgagatgctcaagcacgacaagt 672 |||| ||||||||||||||||| ||||||||||||| Sbjct: 13068058 tgcaatgcttccacgagatgctgaagcacgacaagt 13068023 Score = 65.9 bits (33), Expect = 3e-07 Identities = 36/37 (97%) Strand = Plus / Minus Query: 769 agggatggatcgtgtgcaacgactgctgggacacgac 805 |||||||||||||||||||||||||| |||||||||| Sbjct: 13067381 agggatggatcgtgtgcaacgactgcagggacacgac 13067345 Score = 50.1 bits (25), Expect = 0.016 Identities = 40/45 (88%) Strand = Plus / Minus Query: 534 tgcatcgaggacgcgatgaagaacaactgcccgatctgctacgag 578 ||||||||| || | ||||||||||||||||| ||||| |||||| Sbjct: 13068281 tgcatcgagaactccatgaagaacaactgccccatctgttacgag 13068237 Score = 50.1 bits (25), Expect = 0.016 Identities = 28/29 (96%) Strand = Plus / Minus Query: 306 tgtctcgtctgtgacaccgagcagccggt 334 |||||||||||||||||||| |||||||| Sbjct: 13068909 tgtctcgtctgtgacaccgaacagccggt 13068881 Score = 46.1 bits (23), Expect = 0.25 Identities = 32/35 (91%) Strand = Plus / Minus Query: 699 atctttgacatggagaaattcttgagggccttgga 733 |||||||||||||| || ||||||||||| ||||| Sbjct: 13067865 atctttgacatggacaagttcttgagggctttgga 13067831 Score = 44.1 bits (22), Expect = 1.0 Identities = 34/38 (89%) Strand = Plus / Minus Query: 837 aagtgttgccactgccagtcctacaacacctgcagggt 874 ||||| ||||| |||||||| |||||||||||||||| Sbjct: 13067316 aagtgctgccattgccagtctcacaacacctgcagggt 13067279 Score = 44.1 bits (22), Expect = 1.0 Identities = 28/30 (93%) Strand = Plus / Minus Query: 456 gttggaggcaaggacaacttcttccactgc 485 |||||||| ||||| ||||||||||||||| Sbjct: 13068484 gttggagggaaggataacttcttccactgc 13068455
>gb|AC134231.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0006D11, complete sequence Length = 176637 Score = 149 bits (75), Expect = 2e-32 Identities = 84/87 (96%) Strand = Plus / Minus Query: 174 tgcaagcactacaggaggcggtgcaggatccgggcgccatgctgcaacgacgtcttccac 233 |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| Sbjct: 150161 tgcaagcactacaggaggaggtgcaggatccgggcgccgtgctgcaacgacgtcttccac 150102 Query: 234 tgccgccattgccacaacgactccacg 260 |||||||||||||||||||| |||||| Sbjct: 150101 tgccgccattgccacaacgagtccacg 150075 Score = 97.6 bits (49), Expect = 8e-17 Identities = 70/77 (90%) Strand = Plus / Minus Query: 336 gcgcaagtgtgcagcaactgcggcgtgtgcatgggggactacttctgccgggcgtgcaaa 395 |||||||||||| |||||||||||| |||||||| || ||||||||| | ||||||||| Sbjct: 149720 gcgcaagtgtgctacaactgcggcgtttgcatgggcgagtacttctgcagcgcgtgcaaa 149661 Query: 396 ttcttcgacgacgacgt 412 ||||||||||||||||| Sbjct: 149660 ttcttcgacgacgacgt 149644 Score = 87.7 bits (44), Expect = 7e-14 Identities = 83/96 (86%) Strand = Plus / Minus Query: 577 agtacctgttcgactccctgagggaggcgtcagtgctgaggtgcggccacaccatgcacc 636 |||| ||||| ||||| || |||||| |||| ||||| || || || ||||| ||||||| Sbjct: 149041 agtatctgtttgactctctaagggagacgtccgtgctcagatgtgggcacacgatgcacc 148982 Query: 637 tgcactgcttccacgagatgctcaagcacgacaagt 672 |||| ||||||||||||||||| ||||||||||||| Sbjct: 148981 tgcaatgcttccacgagatgctgaagcacgacaagt 148946 Score = 65.9 bits (33), Expect = 3e-07 Identities = 36/37 (97%) Strand = Plus / Minus Query: 769 agggatggatcgtgtgcaacgactgctgggacacgac 805 |||||||||||||||||||||||||| |||||||||| Sbjct: 148304 agggatggatcgtgtgcaacgactgcagggacacgac 148268 Score = 50.1 bits (25), Expect = 0.016 Identities = 40/45 (88%) Strand = Plus / Minus Query: 534 tgcatcgaggacgcgatgaagaacaactgcccgatctgctacgag 578 ||||||||| || | ||||||||||||||||| ||||| |||||| Sbjct: 149204 tgcatcgagaactccatgaagaacaactgccccatctgttacgag 149160 Score = 50.1 bits (25), Expect = 0.016 Identities = 28/29 (96%) Strand = Plus / Minus Query: 306 tgtctcgtctgtgacaccgagcagccggt 334 |||||||||||||||||||| |||||||| Sbjct: 149832 tgtctcgtctgtgacaccgaacagccggt 149804 Score = 46.1 bits (23), Expect = 0.25 Identities = 32/35 (91%) Strand = Plus / Minus Query: 699 atctttgacatggagaaattcttgagggccttgga 733 |||||||||||||| || ||||||||||| ||||| Sbjct: 148788 atctttgacatggacaagttcttgagggctttgga 148754 Score = 44.1 bits (22), Expect = 1.0 Identities = 34/38 (89%) Strand = Plus / Minus Query: 837 aagtgttgccactgccagtcctacaacacctgcagggt 874 ||||| ||||| |||||||| |||||||||||||||| Sbjct: 148239 aagtgctgccattgccagtctcacaacacctgcagggt 148202 Score = 44.1 bits (22), Expect = 1.0 Identities = 28/30 (93%) Strand = Plus / Minus Query: 456 gttggaggcaaggacaacttcttccactgc 485 |||||||| ||||| ||||||||||||||| Sbjct: 149407 gttggagggaaggataacttcttccactgc 149378
>gb|BT018742.1| Zea mays clone EL01N0521E02.d mRNA sequence Length = 1221 Score = 58.0 bits (29), Expect = 7e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 444 ggcatctgcagggttggaggcaaggacaacttcttccactg 484 ||||| ||||||||||| |||||||| |||||||||||||| Sbjct: 419 ggcatatgcagggttggtggcaaggaaaacttcttccactg 459 Score = 48.1 bits (24), Expect = 0.064 Identities = 69/84 (82%) Strand = Plus / Plus Query: 170 cgggtgcaagcactacaggaggcggtgcaggatccgggcgccatgctgcaacgacgtctt 229 ||||||| |||| ||| || || |||||| |||| ||| || ||||||||| | || || Sbjct: 139 cgggtgcgagcattaccggcggaggtgcaagatcgtggcaccgtgctgcaaccaggtgtt 198 Query: 230 ccactgccgccattgccacaacga 253 || ||||||||| ||||||||||| Sbjct: 199 cccctgccgccactgccacaacga 222
>gb|AY105057.1| Zea mays PCO108332 mRNA sequence Length = 1335 Score = 58.0 bits (29), Expect = 7e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 444 ggcatctgcagggttggaggcaaggacaacttcttccactg 484 ||||| ||||||||||| |||||||| |||||||||||||| Sbjct: 469 ggcatatgcagggttggtggcaaggaaaacttcttccactg 509 Score = 48.1 bits (24), Expect = 0.064 Identities = 69/84 (82%) Strand = Plus / Plus Query: 170 cgggtgcaagcactacaggaggcggtgcaggatccgggcgccatgctgcaacgacgtctt 229 ||||||| |||| ||| || || |||||| |||| ||| || ||||||||| | || || Sbjct: 189 cgggtgcgagcattaccggcggaggtgcaagatcgtggcaccgtgctgcaaccaggtgtt 248 Query: 230 ccactgccgccattgccacaacga 253 || ||||||||| ||||||||||| Sbjct: 249 cccctgccgccactgccacaacga 272
>ref|XM_001234969.1| PREDICTED: Gallus gallus hypothetical protein LOC771726 (LOC771726), mRNA Length = 2010 Score = 52.0 bits (26), Expect = 0.004 Identities = 62/74 (83%) Strand = Plus / Plus Query: 413 cgacaaggagcaataccactgcaaagactgcggcatctgcagggttggaggcaaggacaa 472 ||||||| |||| ||||||||| | || ||||||||||||||| | || |||||| | Sbjct: 156 cgacaagaagcagtaccactgcgacgagtgcggcatctgcaggatcggccccaaggagga 215 Query: 473 cttcttccactgcc 486 |||||||||||||| Sbjct: 216 cttcttccactgcc 229
>ref|NM_001073473.1| Oryza sativa (japonica cultivar-group) Os12g0538500 (Os12g0538500) mRNA, complete cds Length = 1334 Score = 52.0 bits (26), Expect = 0.004 Identities = 38/42 (90%) Strand = Plus / Plus Query: 444 ggcatctgcagggttggaggcaaggacaacttcttccactgc 485 ||||| ||||||||||| |||||||| |||| |||||||||| Sbjct: 474 ggcatatgcagggttggtggcaaggaaaactacttccactgc 515 Score = 48.1 bits (24), Expect = 0.064 Identities = 69/84 (82%) Strand = Plus / Plus Query: 170 cgggtgcaagcactacaggaggcggtgcaggatccgggcgccatgctgcaacgacgtctt 229 ||||||| |||| ||||||||| | |||| |||| |||||| |||||| ||| || || Sbjct: 194 cgggtgcgagcattacaggaggagatgcaagatcgtggcgccctgctgcggcgaggtgtt 253 Query: 230 ccactgccgccattgccacaacga 253 | |||||||||||||||||||| Sbjct: 254 cgcttgccgccattgccacaacga 277
>emb|AJ720511.1| Gallus gallus mRNA for hypothetical protein, clone 19f10 Length = 2166 Score = 52.0 bits (26), Expect = 0.004 Identities = 62/74 (83%) Strand = Plus / Plus Query: 413 cgacaaggagcaataccactgcaaagactgcggcatctgcagggttggaggcaaggacaa 472 ||||||| |||| ||||||||| | || ||||||||||||||| | || |||||| | Sbjct: 301 cgacaagaagcagtaccactgcgacgagtgcggcatctgcaggatcggccccaaggagga 360 Query: 473 cttcttccactgcc 486 |||||||||||||| Sbjct: 361 cttcttccactgcc 374
>dbj|AK104287.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-D07, full insert sequence Length = 1252 Score = 52.0 bits (26), Expect = 0.004 Identities = 38/42 (90%) Strand = Plus / Plus Query: 444 ggcatctgcagggttggaggcaaggacaacttcttccactgc 485 ||||| ||||||||||| |||||||| |||| |||||||||| Sbjct: 474 ggcatatgcagggttggtggcaaggaaaactacttccactgc 515 Score = 48.1 bits (24), Expect = 0.064 Identities = 69/84 (82%) Strand = Plus / Plus Query: 170 cgggtgcaagcactacaggaggcggtgcaggatccgggcgccatgctgcaacgacgtctt 229 ||||||| |||| ||||||||| | |||| |||| |||||| |||||| ||| || || Sbjct: 194 cgggtgcgagcattacaggaggagatgcaagatcgtggcgccctgctgcggcgaggtgtt 253 Query: 230 ccactgccgccattgccacaacga 253 | |||||||||||||||||||| Sbjct: 254 cgcttgccgccattgccacaacga 277
>dbj|AK104170.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-F09, full insert sequence Length = 1203 Score = 52.0 bits (26), Expect = 0.004 Identities = 38/42 (90%) Strand = Plus / Plus Query: 444 ggcatctgcagggttggaggcaaggacaacttcttccactgc 485 ||||| ||||||||||| |||||||| |||| |||||||||| Sbjct: 477 ggcatatgcagggttggtggcaaggaaaactacttccactgc 518 Score = 48.1 bits (24), Expect = 0.064 Identities = 69/84 (82%) Strand = Plus / Plus Query: 170 cgggtgcaagcactacaggaggcggtgcaggatccgggcgccatgctgcaacgacgtctt 229 ||||||| |||| ||||||||| | |||| |||| |||||| |||||| ||| || || Sbjct: 197 cgggtgcgagcattacaggaggagatgcaagatcgtggcgccctgctgcggcgaggtgtt 256 Query: 230 ccactgccgccattgccacaacga 253 | |||||||||||||||||||| Sbjct: 257 cgcttgccgccattgccacaacga 280
>dbj|AK069502.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023020D18, full insert sequence Length = 1306 Score = 52.0 bits (26), Expect = 0.004 Identities = 38/42 (90%) Strand = Plus / Plus Query: 444 ggcatctgcagggttggaggcaaggacaacttcttccactgc 485 ||||| ||||||||||| |||||||| |||| |||||||||| Sbjct: 496 ggcatatgcagggttggtggcaaggaaaactacttccactgc 537 Score = 48.1 bits (24), Expect = 0.064 Identities = 69/84 (82%) Strand = Plus / Plus Query: 170 cgggtgcaagcactacaggaggcggtgcaggatccgggcgccatgctgcaacgacgtctt 229 ||||||| |||| ||||||||| | |||| |||| |||||| |||||| ||| || || Sbjct: 216 cgggtgcgagcattacaggaggagatgcaagatcgtggcgccctgctgcggcgaggtgtt 275 Query: 230 ccactgccgccattgccacaacga 253 | |||||||||||||||||||| Sbjct: 276 cgcttgccgccattgccacaacga 299
>dbj|AK059316.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-H03, full insert sequence Length = 1334 Score = 52.0 bits (26), Expect = 0.004 Identities = 38/42 (90%) Strand = Plus / Plus Query: 444 ggcatctgcagggttggaggcaaggacaacttcttccactgc 485 ||||| ||||||||||| |||||||| |||| |||||||||| Sbjct: 474 ggcatatgcagggttggtggcaaggaaaactacttccactgc 515 Score = 48.1 bits (24), Expect = 0.064 Identities = 69/84 (82%) Strand = Plus / Plus Query: 170 cgggtgcaagcactacaggaggcggtgcaggatccgggcgccatgctgcaacgacgtctt 229 ||||||| |||| ||||||||| | |||| |||| |||||| |||||| ||| || || Sbjct: 194 cgggtgcgagcattacaggaggagatgcaagatcgtggcgccctgctgcggcgaggtgtt 253 Query: 230 ccactgccgccattgccacaacga 253 | |||||||||||||||||||| Sbjct: 254 cgcttgccgccattgccacaacga 277
>dbj|AP006133.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT09O08, TM0231a, complete sequence Length = 64124 Score = 52.0 bits (26), Expect = 0.004 Identities = 68/82 (82%) Strand = Plus / Minus Query: 172 ggtgcaagcactacaggaggcggtgcaggatccgggcgccatgctgcaacgacgtcttcc 231 |||||||||| |||||||| | |||||||| || || || ||||||||||| ||| | Sbjct: 44111 ggtgcaagcattacaggagaagatgcaggattcgtgctccctgctgcaacgagatctact 44052 Query: 232 actgccgccattgccacaacga 253 |||||||||||| |||||||| Sbjct: 44051 cctgccgccattgtcacaacga 44030
>gb|BT009109.1| Triticum aestivum clone wl1.pk0003.h12:fis, full insert mRNA sequence Length = 1084 Score = 48.1 bits (24), Expect = 0.064 Identities = 39/44 (88%) Strand = Plus / Plus Query: 441 tgcggcatctgcagggttggaggcaaggacaacttcttccactg 484 |||||||||||||| ||| |||| |||||||||||||||||| Sbjct: 137 tgcggcatctgcagaactggtggcatggacaacttcttccactg 180
>dbj|AK227830.1| Arabidopsis thaliana mRNA for hypothetical protein, clone: RAFL14-39-O20 Length = 1099 Score = 46.1 bits (23), Expect = 0.25 Identities = 23/23 (100%) Strand = Plus / Plus Query: 234 tgccgccattgccacaacgactc 256 ||||||||||||||||||||||| Sbjct: 166 tgccgccattgccacaacgactc 188
>ref|NM_116162.4| Arabidopsis thaliana protein binding / ubiquitin-protein ligase/ zinc ion binding (AT3G62970) mRNA, complete cds Length = 1088 Score = 46.1 bits (23), Expect = 0.25 Identities = 23/23 (100%) Strand = Plus / Plus Query: 234 tgccgccattgccacaacgactc 256 ||||||||||||||||||||||| Sbjct: 165 tgccgccattgccacaacgactc 187
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 46.1 bits (23), Expect = 0.25 Identities = 23/23 (100%) Strand = Plus / Minus Query: 32 gcagaagcagaagcagagccgaa 54 ||||||||||||||||||||||| Sbjct: 543512 gcagaagcagaagcagagccgaa 543490 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 27 cagcggcagaagcagaagcag 47 ||||||||||||||||||||| Sbjct: 36052529 cagcggcagaagcagaagcag 36052509
>gb|BT006418.1| Arabidopsis thaliana At3g62970 gene, complete cds Length = 831 Score = 46.1 bits (23), Expect = 0.25 Identities = 23/23 (100%) Strand = Plus / Plus Query: 234 tgccgccattgccacaacgactc 256 ||||||||||||||||||||||| Sbjct: 130 tgccgccattgccacaacgactc 152
>dbj|AP002882.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0439B06 Length = 135991 Score = 46.1 bits (23), Expect = 0.25 Identities = 23/23 (100%) Strand = Plus / Minus Query: 32 gcagaagcagaagcagagccgaa 54 ||||||||||||||||||||||| Sbjct: 18117 gcagaagcagaagcagagccgaa 18095
>emb|BX825642.1|CNS0A514 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL52ZF09 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 947 Score = 46.1 bits (23), Expect = 0.25 Identities = 23/23 (100%) Strand = Plus / Plus Query: 234 tgccgccattgccacaacgactc 256 ||||||||||||||||||||||| Sbjct: 134 tgccgccattgccacaacgactc 156
>emb|AL163816.1|ATT20O10 Arabidopsis thaliana DNA chromosome 3, BAC clone T20O10 Length = 83122 Score = 46.1 bits (23), Expect = 0.25 Identities = 23/23 (100%) Strand = Plus / Plus Query: 234 tgccgccattgccacaacgactc 256 ||||||||||||||||||||||| Sbjct: 13769 tgccgccattgccacaacgactc 13791
>gb|AC169378.2| Sorghum bicolor clone SB_BBc0007L02, complete sequence Length = 138518 Score = 44.1 bits (22), Expect = 1.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 32 gcagaagcagaagcagagccga 53 |||||||||||||||||||||| Sbjct: 38030 gcagaagcagaagcagagccga 38009
>gb|BT016752.1| Zea mays clone Contig585 mRNA sequence Length = 1421 Score = 44.1 bits (22), Expect = 1.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 233 ctgccgccattgccacaacgac 254 |||||||||||||||||||||| Sbjct: 409 ctgccgccattgccacaacgac 430 Score = 44.1 bits (22), Expect = 1.0 Identities = 34/38 (89%) Strand = Plus / Plus Query: 556 acaactgcccgatctgctacgagtacctgttcgactcc 593 |||||||||| |||||| |||||| |||||||||||| Sbjct: 753 acaactgccccgtctgcttcgagtatctgttcgactcc 790
>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome Length = 5751492 Score = 44.1 bits (22), Expect = 1.0 Identities = 25/26 (96%) Strand = Plus / Plus Query: 31 ggcagaagcagaagcagagccgaagc 56 |||||||||||||||||||| ||||| Sbjct: 4530669 ggcagaagcagaagcagagcagaagc 4530694
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12 Length = 27566993 Score = 44.1 bits (22), Expect = 1.0 Identities = 67/82 (81%) Strand = Plus / Plus Query: 172 ggtgcaagcactacaggaggcggtgcaggatccgggcgccatgctgcaacgacgtcttcc 231 ||||| |||| ||||||||| | |||| |||| |||||| |||||| ||| || ||| Sbjct: 21490546 ggtgcgagcattacaggaggagatgcaagatcgtggcgccctgctgcggcgaggtgttcg 21490605 Query: 232 actgccgccattgccacaacga 253 |||||||||||||||||||| Sbjct: 21490606 cttgccgccattgccacaacga 21490627
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 44.1 bits (22), Expect = 1.0 Identities = 25/26 (96%) Strand = Plus / Plus Query: 398 cttcgacgacgacgtcgacaaggagc 423 ||||||||||||||||||| |||||| Sbjct: 7007977 cttcgacgacgacgtcgaccaggagc 7008002
>emb|Y12465.1|SBPPSTK2 S.bicolor mRNA for putative protein serine/threonine kinase, clone cSNFL2 Length = 2054 Score = 44.1 bits (22), Expect = 1.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 32 gcagaagcagaagcagagccga 53 |||||||||||||||||||||| Sbjct: 34 gcagaagcagaagcagagccga 55
>emb|AL844497.4|CNS08CAU Oryza sativa chromosome 12, . BAC OSJNBa0085B23 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 158019 Score = 44.1 bits (22), Expect = 1.0 Identities = 67/82 (81%) Strand = Plus / Minus Query: 172 ggtgcaagcactacaggaggcggtgcaggatccgggcgccatgctgcaacgacgtcttcc 231 ||||| |||| ||||||||| | |||| |||| |||||| |||||| ||| || ||| Sbjct: 155343 ggtgcgagcattacaggaggagatgcaagatcgtggcgccctgctgcggcgaggtgttcg 155284 Query: 232 actgccgccattgccacaacga 253 |||||||||||||||||||| Sbjct: 155283 cttgccgccattgccacaacga 155262
>ref|NM_001051294.1| Oryza sativa (japonica cultivar-group) Os01g0840300 (Os01g0840300) mRNA, complete cds Length = 942 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 27 cagcggcagaagcagaagcag 47 ||||||||||||||||||||| Sbjct: 298 cagcggcagaagcagaagcag 318
>ref|NM_001048331.1| Oryza sativa (japonica cultivar-group) Os01g0110200 (Os01g0110200) mRNA, complete cds Length = 970 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 34 agaagcagaagcagagccgaa 54 ||||||||||||||||||||| Sbjct: 1 agaagcagaagcagagccgaa 21
>gb|AC186746.1| Musa acuminata clone MA4_25J11, complete sequence Length = 105019 Score = 42.1 bits (21), Expect = 4.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 27 cagcggcagaagcagaagcagagcc 51 |||| |||||||||||||||||||| Sbjct: 68423 cagcagcagaagcagaagcagagcc 68399
>gb|AC122259.2| Mus musculus BAC clone RP23-183E7 from 17, complete sequence Length = 209695 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 832 agaggaagtgttgccactgcc 852 ||||||||||||||||||||| Sbjct: 173168 agaggaagtgttgccactgcc 173148
>gb|AC109610.25| Mus musculus strain C57BL/6J clone rp23-305g19 map 17, complete sequence Length = 194366 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 832 agaggaagtgttgccactgcc 852 ||||||||||||||||||||| Sbjct: 66698 agaggaagtgttgccactgcc 66718
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 2 gagcgagcgcggcaacggcca 22 ||||||||||||||||||||| Sbjct: 4421259 gagcgagcgcggcaacggcca 4421279
>ref|NM_070384.2| Caenorhabditis elegans Y57G11C.9b (Y57G11C.9) mRNA, complete cds Length = 2537 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 27 cagcggcagaagcagaagcag 47 ||||||||||||||||||||| Sbjct: 1507 cagcggcagaagcagaagcag 1487
>ref|XM_806144.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053503733.30) partial mRNA Length = 1599 Score = 42.1 bits (21), Expect = 4.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 401 cgacgacgacgtcgacaaggagcaa 425 ||||||||||| ||||||||||||| Sbjct: 93 cgacgacgacgacgacaaggagcaa 69
>emb|AJ439998.1|BSP439998 Blattabacterium sp. (Loboptera dicipiens) partial groEL gene Length = 972 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 397 tcttcgacgacgacgtcgaca 417 ||||||||||||||||||||| Sbjct: 182 tcttcgacgacgacgtcgaca 162
>dbj|AP003241.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0408C03 Length = 141273 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 27 cagcggcagaagcagaagcag 47 ||||||||||||||||||||| Sbjct: 65254 cagcggcagaagcagaagcag 65234
>dbj|AK109646.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-138-H09, full insert sequence Length = 970 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 34 agaagcagaagcagagccgaa 54 ||||||||||||||||||||| Sbjct: 1 agaagcagaagcagagccgaa 21
>dbj|AP006136.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT30K08, TM0237, complete sequence Length = 114468 Score = 42.1 bits (21), Expect = 4.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 457 ttggaggcaaggacaacttcttcca 481 ||||||||||||| ||||||||||| Sbjct: 457 ttggaggcaaggataacttcttcca 433
>emb|Z99281.1| Caenorhabditis elegans YAC Y57G11C, complete sequence Length = 313573 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 27 cagcggcagaagcagaagcag 47 ||||||||||||||||||||| Sbjct: 152711 cagcggcagaagcagaagcag 152691
>ref|XM_766295.1| Giardia lamblia ATCC 50803 hypothetical protein (GLP_28_27768_32342) partial mRNA Length = 4575 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 28 agcggcagaagcagaagcaga 48 ||||||||||||||||||||| Sbjct: 1242 agcggcagaagcagaagcaga 1262 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 146,451,475 Number of extensions: 7505538 Number of successful extensions: 147876 Number of sequences better than 10.0: 45 Number of HSP's gapped: 147869 Number of HSP's successfully gapped: 77 Length of query: 1052 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1029 Effective length of database: 18,503,978,556 Effective search space: 19040593934124 Effective search space used: 19040593934124 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
