ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf92h05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1P23920:SYM_BACST Methionyl-tRNA synthetase - Bacillus stearother... 33 6.2
2O70218:HMX1_MOUSE Homeobox protein HMX1 - Mus musculus (Mouse) 32 8.1

>P23920:SYM_BACST Methionyl-tRNA synthetase - Bacillus stearothermophilus (Geobacillus|
            stearothermophilus)
          Length = 649
 Score = 32.7 bits (73), Expect = 6.2
 Identities = 23/98 (23%), Positives = 48/98 (48%)
 Frame = +2

Query: 1157 YGTLNDNNDQYSGMIIFPRINIDADKFDYASKMLETIRALIKRLEKIDPTKMAHEEQLCF 1336
            +G + +  +   G  +FPR++I  +        +E I+A ++  +  +  K   +     
Sbjct: 492  FGLIPEGTNVQKGEPLFPRLDIGVE--------VEYIKAHMQGGKPAEAAKEEKQAARAE 543

Query: 1337 WINIHNALVMHAFMAYGLQDKRMKSSDMILKAAYDVGG 1450
             I+I +   +   +A  +Q +RMK++D +LK   D+GG
Sbjct: 544  EISIDDFAKVDLRVAEVVQPERMKNADKLLKLQLDLGG 581



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>O70218:HMX1_MOUSE Homeobox protein HMX1 - Mus musculus (Mouse)|
          Length = 332

 Score = 32.3 bits (72), Expect = 8.1
 Identities = 19/50 (38%), Positives = 24/50 (48%)
 Frame = -1

Query: 770 LDGAFLDPPDQKHEGRYPGIDQTSPCRAKANAVPFVRLPPQGPLSPKPIL 621
           L+ A L PP  +   R P +   SP  A   A+PF   PP  P  P P+L
Sbjct: 254 LEAASLSPPGAQRLVRVPVLYHESPPAAAGPALPFPLAPP-APAPPPPLL 302


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 356,636,693
Number of extensions: 7630702
Number of successful extensions: 19562
Number of sequences better than 10.0: 2
Number of HSP's gapped: 19553
Number of HSP's successfully gapped: 2
Length of query: 706
Length of database: 100,686,439
Length adjustment: 120
Effective length of query: 586
Effective length of database: 67,771,039
Effective search space: 39713828854
Effective search space used: 39713828854
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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