ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf92h01 |
|---|---|
| Clone Library Name | barley_pub |
>emb|CT830534.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA121J18, full insert sequence Length = 1483 Score = 1235 bits (623), Expect = 0.0 Identities = 1028/1155 (89%), Gaps = 6/1155 (0%) Strand = Plus / Plus Query: 121 gatggagctgtggagcaagctgaggagcctcgacgcctacccgaaggtgaacgaggactt 180 |||||| ||||||| ||||||| ||||||||||||||||||| ||||||||||||||||| Sbjct: 88 gatggatctgtggaacaagctgcggagcctcgacgcctaccccaaggtgaacgaggactt 147 Query: 181 ctacagccgcaccctctccggcgggctcatcaccatcgtctcctccctcgctatcctcct 240 |||||||||||||||||||||||| ||||||||||||| |||||| ||||| |||||||| Sbjct: 148 ctacagccgcaccctctccggcggcctcatcaccatcgcctcctcgctcgccatcctcct 207 Query: 241 ccccttcttctcagagatccggttgtatctatatgctgccacagagagtaagctcacagt 300 || |||| |||| ||||||||| ||||||||||| |||| ||||| |||||||||||||| Sbjct: 208 cctcttcctctccgagatccggctgtatctatattctgctacagatagtaagctcacagt 267 Query: 301 tgatacctcaagaggggaaaggttacatattaattttgatgttacattccccgcccttcc 360 ||||||||||||||||||||| |||| || |||||||||||||| ||||| || ||||| Sbjct: 268 cgatacctcaagaggggaaaggctacacatcaattttgatgttacgttcccagctcttcc 327 Query: 361 ttgttctcttgttgctattgatactatggatgttagtggagagcaacattatgatataag 420 |||||| ||||||||| ||||||| |||||||| ||||||||||| || ||||||||||| Sbjct: 328 ttgttcacttgttgctgttgatacaatggatgtcagtggagagcagcactatgatataag 387 Query: 421 acacgacataatgaagaaaagaatcgatcaccttggtaatgtaattgaatcaagaaaaga 480 ||| |||||||| ||||||||||| ||| | ||||||||||||||||||||||||||||| Sbjct: 388 acatgacataataaagaaaagaattgataatcttggtaatgtaattgaatcaagaaaaga 447 Query: 481 tggagttggttcccctaagattgaaagaccattgcagaatcatggtggaaggcttgacca 540 |||||||||| |||||||||||||||||||| ||||||| ||||||||||| |||||||| Sbjct: 448 tggagttggtgcccctaagattgaaagaccactgcagaaacatggtggaagacttgacca 507 Query: 541 caatgaggtttactgtgggtcttgttatggttccgaagagtcagatgaccagtgttgtaa 600 ||| || ||||||||||| |||||||||||||| |||||||||||||| ||||| ||||| Sbjct: 508 caacgaagtttactgtggatcttgttatggttctgaagagtcagatgatcagtgctgtaa 567 Query: 601 ctcctgtgaagaagttcgtgatgcctatcggaagaaaggttgggcactcactaacgtaga 660 |||||||||||| || ||||||||||||||||| ||||| ||||||||||| || |||| Sbjct: 568 ctcctgtgaagacgtccgtgatgcctatcggaaaaaagggtgggcactcaccaatataga 627 Query: 661 atcaattgatcagtgcaagagagagggcttcgttcaaaggttaaaagacgaacaaggcga 720 | ||||||||||| ||| |||||||||| ||||||||||||||||| |||||||| || Sbjct: 628 agagattgatcagtgtaagcgagagggctttgttcaaaggttaaaagatgaacaaggaga 687 Query: 721 aggttgcaacattcatggatttgtagatgtcaataaagttgctggaaattttcactttgc 780 |||||||| |||||||||||||||| ||||||| ||||| |||||||||||||||||||| Sbjct: 688 aggttgcagcattcatggatttgtaaatgtcaacaaagtagctggaaattttcactttgc 747 Query: 781 cccaggaaaaagcttggaccatgcattcaacttccttcaagatatgttgaacttccagcc 840 ||| || |||||||||||||| |||||||||||||||||||| | ||||||||||| | Sbjct: 748 ccctgg-gaaagcttggaccat-cattcaacttccttcaagatctcttgaacttccaaac 805 Query: 841 agaaaattacaatataagccacaagataaacaaattgtcctttgggaaagagttccctgg 900 |||||||||||||||||| |||||||||||||| ||||||||| ||| |||||||| Sbjct: 806 agaaaattacaatataagtcacaagataaacaagccttcctttggggtaga-ttccctgg 864 Query: 901 tgttgtcaatcctcttgatggtgtagagtggaaacaggagcagacaactggattgacagg 960 || |||||||||||||||| ||| ||||||| ||||||||| |||| |||||| ||||| Sbjct: 865 tg-tgtcaatcctcttgat-gtggagagtgg-aacaggagcccacaaatggattaacagg 921 Query: 961 gatgtaccagtattttgtgaaggttgtccctactatctatacagatatcagggggcgaaa 1020 |||| ||| | |||| ||||||||||| | |||||||| | || || || || || Sbjct: 922 aatgtcccaatcctttggcaaggttgtccccccaatctatacggccattagaggacggaa 981 Query: 1021 gattcactcaaatcagttttctgtgacggagcactttagagaagcaattggccttccaag 1080 || ||||||||||||||||||||||||||||||||||||||||||||||| ||| || Sbjct: 982 aatcaactcaaatcagttttctgtgacggagcactttagagaagcaattggctatcccag 1041 Query: 1081 gcccccgcccggtgtatatttcttctacgaattttcgccaattcaggttgattttactga 1140 ||| ||||| ||||||||||||||||| |||||||| |||||| |||||||||||||||| Sbjct: 1042 gcctccgcctggtgtatatttcttctatgaattttctccaattaaggttgattttactga 1101 Query: 1141 agaaaacacatcgcttcttcacttcttgacaaacatatgtgcgattgttggaggaatatt 1200 |||||| |||||||||||||||||| |||||||||||||||| ||||||||||| || || Sbjct: 1102 agaaaatacatcgcttcttcacttcctgacaaacatatgtgctattgttggagggatttt 1161 Query: 1201 caccgtggctggcatcatagattcatttgtgtaccatggtcatcgtgcaatcaagaagaa 1260 ||| || ||||||||||||||||| ||||| | ||||||||||||||| || ||||| || Sbjct: 1162 cactgttgctggcatcatagattcttttgtctcccatggtcatcgtgctataaagaaaaa 1221 Query: 1261 gatggagatcggaaa 1275 ||||||||||||||| Sbjct: 1222 gatggagatcggaaa 1236
>gb|AY112254.1| Zea mays CL9004_1 mRNA sequence Length = 649 Score = 367 bits (185), Expect = 8e-98 Identities = 358/416 (86%), Gaps = 1/416 (0%) Strand = Plus / Minus Query: 840 cagaaaattacaatataagccacaagataaacaaattgtcctttgggaaagagttccctg 899 |||||| |||||||||||||| ||||||||| || ||||||||||| |||||||||| | Sbjct: 627 cagaaacttacaatataagcc-caagataaataagctgtcctttggggaagagttcccag 569 Query: 900 gtgttgtcaatcctcttgatggtgtagagtggaaacaggagcagacaactggattgacag 959 |||| ||||||||||||||||| || ||||||| |||||| | | | |||||| || | Sbjct: 568 gtgtagtcaatcctcttgatggagttgagtggatacaggataactccaatggattaacgg 509 Query: 960 ggatgtaccagtattttgtgaaggttgtccctactatctatacagatatcagggggcgaa 1019 ||||||||||||||||||| |||||||| || || ||||| |||||||||| || | Sbjct: 508 ggatgtaccagtattttgtaaaggttgttccaacaatctacacagatatcannnnncgca 449 Query: 1020 agattcactcaaatcagttttctgtgacggagcactttagagaagcaattggccttccaa 1079 |||||||||||||||||||||||||||| |||||||| ||||| ||||||||| ||| | Sbjct: 448 agattcactcaaatcagttttctgtgacagagcacttcagagaggcaattggctatccta 389 Query: 1080 ggcccccgcccggtgtatatttcttctacgaattttcgccaattcaggttgattttactg 1139 |||| || || |||||||||||||||||||||||||| ||||| ||||||||||||||| Sbjct: 388 ggcctccacctggtgtatatttcttctacgaattttcaccaatcaaggttgattttactg 329 Query: 1140 aagaaaacacatcgcttcttcacttcttgacaaacatatgtgcgattgttggaggaatat 1199 | ||||| || ||||| ||||||||| |||| ||||||||||| ||||||||||| || | Sbjct: 328 aggaaaatacgtcgctccttcacttcctgacgaacatatgtgctattgttggaggtatct 269 Query: 1200 tcaccgtggctggcatcatagattcatttgtgtaccatggtcatcgtgcaatcaag 1255 |||| || ||||||||||||||||| || |||||||||||||| || || |||||| Sbjct: 268 tcacggttgctggcatcatagattctttcgtgtaccatggtcaccgcgccatcaag 213
>dbj|AK059138.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-H09, full insert sequence Length = 518 Score = 323 bits (163), Expect = 1e-84 Identities = 223/243 (91%) Strand = Plus / Plus Query: 1033 tcagttttctgtgacggagcactttagagaagcaattggccttccaaggcccccgcccgg 1092 |||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||| || Sbjct: 1 tcagttttctgtgacggagcactttagagaagcaattggctatcccaggcctccgcctgg 60 Query: 1093 tgtatatttcttctacgaattttcgccaattcaggttgattttactgaagaaaacacatc 1152 ||||||||||||||| |||||||| |||||| |||||||||||||||||||||| ||||| Sbjct: 61 tgtatatttcttctatgaattttctccaattaaggttgattttactgaagaaaatacatc 120 Query: 1153 gcttcttcacttcttgacaaacatatgtgcgattgttggaggaatattcaccgtggctgg 1212 ||||||||||||| |||||||||||||||| ||||||||||| || ||||| || ||||| Sbjct: 121 gcttcttcacttcctgacaaacatatgtgctattgttggagggattttcactgttgctgg 180 Query: 1213 catcatagattcatttgtgtaccatggtcatcgtgcaatcaagaagaagatggagatcgg 1272 |||||||||||| ||||| ||||||||||||||||| || ||||| |||||||||||||| Sbjct: 181 catcatagattcttttgtctaccatggtcatcgtgctataaagaaaaagatggagatcgg 240 Query: 1273 aaa 1275 ||| Sbjct: 241 aaa 243
>ref|NM_001056495.1| Oryza sativa (japonica cultivar-group) Os03g0321400 (Os03g0321400) mRNA, partial cds Length = 517 Score = 321 bits (162), Expect = 4e-84 Identities = 222/242 (91%) Strand = Plus / Plus Query: 1034 cagttttctgtgacggagcactttagagaagcaattggccttccaaggcccccgcccggt 1093 ||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||| ||| Sbjct: 1 cagttttctgtgacggagcactttagagaagcaattggctatcccaggcctccgcctggt 60 Query: 1094 gtatatttcttctacgaattttcgccaattcaggttgattttactgaagaaaacacatcg 1153 |||||||||||||| |||||||| |||||| |||||||||||||||||||||| |||||| Sbjct: 61 gtatatttcttctatgaattttctccaattaaggttgattttactgaagaaaatacatcg 120 Query: 1154 cttcttcacttcttgacaaacatatgtgcgattgttggaggaatattcaccgtggctggc 1213 |||||||||||| |||||||||||||||| ||||||||||| || ||||| || |||||| Sbjct: 121 cttcttcacttcctgacaaacatatgtgctattgttggagggattttcactgttgctggc 180 Query: 1214 atcatagattcatttgtgtaccatggtcatcgtgcaatcaagaagaagatggagatcgga 1273 ||||||||||| ||||| ||||||||||||||||| || ||||| ||||||||||||||| Sbjct: 181 atcatagattcttttgtctaccatggtcatcgtgctataaagaaaaagatggagatcgga 240 Query: 1274 aa 1275 || Sbjct: 241 aa 242
>gb|AC119748.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0042L15, from chromosome 3, complete sequence Length = 172475 Score = 228 bits (115), Expect = 5e-56 Identities = 166/183 (90%) Strand = Plus / Minus Query: 671 cagtgcaagagagagggcttcgttcaaaggttaaaagacgaacaaggcgaaggttgcaac 730 ||||| ||| |||||||||| ||||||||||||||||| |||||||| |||||||||| | Sbjct: 147408 cagtgtaagcgagagggctttgttcaaaggttaaaagatgaacaaggagaaggttgcagc 147349 Query: 731 attcatggatttgtagatgtcaataaagttgctggaaattttcactttgccccaggaaaa 790 ||||||||||||||| ||||||| ||||| ||||||||||||||||||||||| || ||| Sbjct: 147348 attcatggatttgtaaatgtcaacaaagtagctggaaattttcactttgcccctgggaaa 147289 Query: 791 agcttggaccatgcattcaacttccttcaagatatgttgaacttccagccagaaaattac 850 ||||||||||| |||||||||||||||||||| | ||||||||||| | |||||||||| Sbjct: 147288 agcttggaccaatcattcaacttccttcaagatctcttgaacttccaacaagaaaattac 147229 Query: 851 aat 853 ||| Sbjct: 147228 aat 147226 Score = 192 bits (97), Expect = 3e-45 Identities = 130/141 (92%) Strand = Plus / Minus Query: 121 gatggagctgtggagcaagctgaggagcctcgacgcctacccgaaggtgaacgaggactt 180 |||||| ||||||| ||||||| ||||||||||||||||||| ||||||||||||||||| Sbjct: 151429 gatggatctgtggaacaagctgcggagcctcgacgcctaccccaaggtgaacgaggactt 151370 Query: 181 ctacagccgcaccctctccggcgggctcatcaccatcgtctcctccctcgctatcctcct 240 |||||||||||||||||||||||| ||||||||||||| |||||| ||||| |||||||| Sbjct: 151369 ctacagccgcaccctctccggcggcctcatcaccatcgcctcctcgctcgccatcctcct 151310 Query: 241 ccccttcttctcagagatccg 261 || |||| |||| |||||||| Sbjct: 151309 cctcttcctctccgagatccg 151289 Score = 125 bits (63), Expect = 5e-25 Identities = 87/95 (91%) Strand = Plus / Minus Query: 1034 cagttttctgtgacggagcactttagagaagcaattggccttccaaggcccccgcccggt 1093 ||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||| ||| Sbjct: 146649 cagttttctgtgacggagcactttagagaagcaattggctatcccaggcctccgcctggt 146590 Query: 1094 gtatatttcttctacgaattttcgccaattcaggt 1128 |||||||||||||| |||||||| |||||| |||| Sbjct: 146589 gtatatttcttctatgaattttctccaattaaggt 146555 Score = 117 bits (59), Expect = 1e-22 Identities = 68/71 (95%) Strand = Plus / Minus Query: 1124 caggttgattttactgaagaaaacacatcgcttcttcacttcttgacaaacatatgtgcg 1183 ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| Sbjct: 146166 caggttgattttactgaagaaaatacatcgcttcttcacttcctgacaaacatatgtgct 146107 Query: 1184 attgttggagg 1194 ||||||||||| Sbjct: 146106 attgttggagg 146096 Score = 113 bits (57), Expect = 2e-21 Identities = 75/81 (92%) Strand = Plus / Minus Query: 419 agacacgacataatgaagaaaagaatcgatcaccttggtaatgtaattgaatcaagaaaa 478 ||||| |||||||| ||||||||||| ||| | ||||||||||||||||||||||||||| Sbjct: 149082 agacatgacataataaagaaaagaattgataatcttggtaatgtaattgaatcaagaaaa 149023 Query: 479 gatggagttggttcccctaag 499 |||||||||||| |||||||| Sbjct: 149022 gatggagttggtgcccctaag 149002 Score = 109 bits (55), Expect = 3e-20 Identities = 76/83 (91%) Strand = Plus / Minus Query: 498 agattgaaagaccattgcagaatcatggtggaaggcttgaccacaatgaggtttactgtg 557 |||||||||||||| ||||||| ||||||||||| ||||||||||| || |||||||||| Sbjct: 148404 agattgaaagaccactgcagaaacatggtggaagacttgaccacaacgaagtttactgtg 148345 Query: 558 ggtcttgttatggttccgaagag 580 | |||||||||||||| |||||| Sbjct: 148344 gatcttgttatggttctgaagag 148322 Score = 97.6 bits (49), Expect = 1e-16 Identities = 70/77 (90%) Strand = Plus / Minus Query: 1199 ttcaccgtggctggcatcatagattcatttgtgtaccatggtcatcgtgcaatcaagaag 1258 ||||| || ||||||||||||||||| ||||| ||||||||||||||||| || ||||| Sbjct: 145975 ttcactgttgctggcatcatagattcttttgtctaccatggtcatcgtgctataaagaaa 145916 Query: 1259 aagatggagatcggaaa 1275 ||||||||||||||||| Sbjct: 145915 aagatggagatcggaaa 145899 Score = 97.6 bits (49), Expect = 1e-16 Identities = 67/73 (91%) Strand = Plus / Minus Query: 579 agtcagatgaccagtgttgtaactcctgtgaagaagttcgtgatgcctatcggaagaaag 638 |||||||||| ||||| ||||||||||||||||| || ||||||||||||||||| |||| Sbjct: 148160 agtcagatgatcagtgctgtaactcctgtgaagacgtccgtgatgcctatcggaaaaaag 148101 Query: 639 gttgggcactcac 651 | ||||||||||| Sbjct: 148100 ggtgggcactcac 148088 Score = 95.6 bits (48), Expect = 5e-16 Identities = 75/84 (89%) Strand = Plus / Minus Query: 335 tttgatgttacattccccgcccttccttgttctcttgttgctattgatactatggatgtt 394 ||||||||||| ||||| || ||||||||||| ||||||||| ||||||| |||||||| Sbjct: 149293 tttgatgttacgttcccagctcttccttgttcacttgttgctgttgatacaatggatgtc 149234 Query: 395 agtggagagcaacattatgatata 418 ||||||||||| || ||||||||| Sbjct: 149233 agtggagagcagcactatgatata 149210 Score = 87.7 bits (44), Expect = 1e-13 Identities = 59/64 (92%) Strand = Plus / Minus Query: 264 tgtatctatatgctgccacagagagtaagctcacagttgatacctcaagaggggaaaggt 323 ||||||||||| |||| ||||| |||||||||||||| ||||||||||||||||||||| Sbjct: 150648 tgtatctatattctgctacagatagtaagctcacagtcgatacctcaagaggggaaaggc 150589 Query: 324 taca 327 |||| Sbjct: 150588 taca 150585 Score = 79.8 bits (40), Expect = 3e-11 Identities = 61/68 (89%) Strand = Plus / Minus Query: 854 ataagccacaagataaacaaattgtcctttgggaaagagttccctggtgttgtcaatcct 913 ||||| |||||||||||||| | ||||||||| ||| ||||||||||||||||||||| Sbjct: 147128 ataagtcacaagataaacaagctttcctttggggtagaattccctggtgttgtcaatcct 147069 Query: 914 cttgatgg 921 |||||||| Sbjct: 147068 cttgatgg 147061 Score = 63.9 bits (32), Expect = 2e-06 Identities = 56/64 (87%) Strand = Plus / Minus Query: 921 gtgtagagtggaaacaggagcagacaactggattgacagggatgtaccagtattttgtga 980 |||||||||||| ||||||||| |||| |||||| ||||| |||||||| || ||||| | Sbjct: 146979 gtgtagagtggatacaggagcacacaaatggattaacaggaatgtaccaatactttgtca 146920 Query: 981 aggt 984 |||| Sbjct: 146919 aggt 146916
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 228 bits (115), Expect = 5e-56 Identities = 166/183 (90%) Strand = Plus / Minus Query: 671 cagtgcaagagagagggcttcgttcaaaggttaaaagacgaacaaggcgaaggttgcaac 730 ||||| ||| |||||||||| ||||||||||||||||| |||||||| |||||||||| | Sbjct: 11593599 cagtgtaagcgagagggctttgttcaaaggttaaaagatgaacaaggagaaggttgcagc 11593540 Query: 731 attcatggatttgtagatgtcaataaagttgctggaaattttcactttgccccaggaaaa 790 ||||||||||||||| ||||||| ||||| ||||||||||||||||||||||| || ||| Sbjct: 11593539 attcatggatttgtaaatgtcaacaaagtagctggaaattttcactttgcccctgggaaa 11593480 Query: 791 agcttggaccatgcattcaacttccttcaagatatgttgaacttccagccagaaaattac 850 ||||||||||| |||||||||||||||||||| | ||||||||||| | |||||||||| Sbjct: 11593479 agcttggaccaatcattcaacttccttcaagatctcttgaacttccaacaagaaaattac 11593420 Query: 851 aat 853 ||| Sbjct: 11593419 aat 11593417 Score = 192 bits (97), Expect = 3e-45 Identities = 130/141 (92%) Strand = Plus / Minus Query: 121 gatggagctgtggagcaagctgaggagcctcgacgcctacccgaaggtgaacgaggactt 180 |||||| ||||||| ||||||| ||||||||||||||||||| ||||||||||||||||| Sbjct: 11597620 gatggatctgtggaacaagctgcggagcctcgacgcctaccccaaggtgaacgaggactt 11597561 Query: 181 ctacagccgcaccctctccggcgggctcatcaccatcgtctcctccctcgctatcctcct 240 |||||||||||||||||||||||| ||||||||||||| |||||| ||||| |||||||| Sbjct: 11597560 ctacagccgcaccctctccggcggcctcatcaccatcgcctcctcgctcgccatcctcct 11597501 Query: 241 ccccttcttctcagagatccg 261 || |||| |||| |||||||| Sbjct: 11597500 cctcttcctctccgagatccg 11597480 Score = 125 bits (63), Expect = 5e-25 Identities = 87/95 (91%) Strand = Plus / Minus Query: 1034 cagttttctgtgacggagcactttagagaagcaattggccttccaaggcccccgcccggt 1093 ||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||| ||| Sbjct: 11592840 cagttttctgtgacggagcactttagagaagcaattggctatcccaggcctccgcctggt 11592781 Query: 1094 gtatatttcttctacgaattttcgccaattcaggt 1128 |||||||||||||| |||||||| |||||| |||| Sbjct: 11592780 gtatatttcttctatgaattttctccaattaaggt 11592746 Score = 117 bits (59), Expect = 1e-22 Identities = 68/71 (95%) Strand = Plus / Minus Query: 1124 caggttgattttactgaagaaaacacatcgcttcttcacttcttgacaaacatatgtgcg 1183 ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| Sbjct: 11592357 caggttgattttactgaagaaaatacatcgcttcttcacttcctgacaaacatatgtgct 11592298 Query: 1184 attgttggagg 1194 ||||||||||| Sbjct: 11592297 attgttggagg 11592287 Score = 113 bits (57), Expect = 2e-21 Identities = 75/81 (92%) Strand = Plus / Minus Query: 419 agacacgacataatgaagaaaagaatcgatcaccttggtaatgtaattgaatcaagaaaa 478 ||||| |||||||| ||||||||||| ||| | ||||||||||||||||||||||||||| Sbjct: 11595273 agacatgacataataaagaaaagaattgataatcttggtaatgtaattgaatcaagaaaa 11595214 Query: 479 gatggagttggttcccctaag 499 |||||||||||| |||||||| Sbjct: 11595213 gatggagttggtgcccctaag 11595193 Score = 109 bits (55), Expect = 3e-20 Identities = 76/83 (91%) Strand = Plus / Minus Query: 498 agattgaaagaccattgcagaatcatggtggaaggcttgaccacaatgaggtttactgtg 557 |||||||||||||| ||||||| ||||||||||| ||||||||||| || |||||||||| Sbjct: 11594595 agattgaaagaccactgcagaaacatggtggaagacttgaccacaacgaagtttactgtg 11594536 Query: 558 ggtcttgttatggttccgaagag 580 | |||||||||||||| |||||| Sbjct: 11594535 gatcttgttatggttctgaagag 11594513 Score = 97.6 bits (49), Expect = 1e-16 Identities = 70/77 (90%) Strand = Plus / Minus Query: 1199 ttcaccgtggctggcatcatagattcatttgtgtaccatggtcatcgtgcaatcaagaag 1258 ||||| || ||||||||||||||||| ||||| ||||||||||||||||| || ||||| Sbjct: 11592166 ttcactgttgctggcatcatagattcttttgtctaccatggtcatcgtgctataaagaaa 11592107 Query: 1259 aagatggagatcggaaa 1275 ||||||||||||||||| Sbjct: 11592106 aagatggagatcggaaa 11592090 Score = 97.6 bits (49), Expect = 1e-16 Identities = 67/73 (91%) Strand = Plus / Minus Query: 579 agtcagatgaccagtgttgtaactcctgtgaagaagttcgtgatgcctatcggaagaaag 638 |||||||||| ||||| ||||||||||||||||| || ||||||||||||||||| |||| Sbjct: 11594351 agtcagatgatcagtgctgtaactcctgtgaagacgtccgtgatgcctatcggaaaaaag 11594292 Query: 639 gttgggcactcac 651 | ||||||||||| Sbjct: 11594291 ggtgggcactcac 11594279 Score = 95.6 bits (48), Expect = 5e-16 Identities = 75/84 (89%) Strand = Plus / Minus Query: 335 tttgatgttacattccccgcccttccttgttctcttgttgctattgatactatggatgtt 394 ||||||||||| ||||| || ||||||||||| ||||||||| ||||||| |||||||| Sbjct: 11595484 tttgatgttacgttcccagctcttccttgttcacttgttgctgttgatacaatggatgtc 11595425 Query: 395 agtggagagcaacattatgatata 418 ||||||||||| || ||||||||| Sbjct: 11595424 agtggagagcagcactatgatata 11595401 Score = 87.7 bits (44), Expect = 1e-13 Identities = 59/64 (92%) Strand = Plus / Minus Query: 264 tgtatctatatgctgccacagagagtaagctcacagttgatacctcaagaggggaaaggt 323 ||||||||||| |||| ||||| |||||||||||||| ||||||||||||||||||||| Sbjct: 11596839 tgtatctatattctgctacagatagtaagctcacagtcgatacctcaagaggggaaaggc 11596780 Query: 324 taca 327 |||| Sbjct: 11596779 taca 11596776 Score = 79.8 bits (40), Expect = 3e-11 Identities = 61/68 (89%) Strand = Plus / Minus Query: 854 ataagccacaagataaacaaattgtcctttgggaaagagttccctggtgttgtcaatcct 913 ||||| |||||||||||||| | ||||||||| ||| ||||||||||||||||||||| Sbjct: 11593319 ataagtcacaagataaacaagctttcctttggggtagaattccctggtgttgtcaatcct 11593260 Query: 914 cttgatgg 921 |||||||| Sbjct: 11593259 cttgatgg 11593252 Score = 63.9 bits (32), Expect = 2e-06 Identities = 56/64 (87%) Strand = Plus / Minus Query: 921 gtgtagagtggaaacaggagcagacaactggattgacagggatgtaccagtattttgtga 980 |||||||||||| ||||||||| |||| |||||| ||||| |||||||| || ||||| | Sbjct: 11593170 gtgtagagtggatacaggagcacacaaatggattaacaggaatgtaccaatactttgtca 11593111 Query: 981 aggt 984 |||| Sbjct: 11593110 aggt 11593107
>ref|NM_001059500.1| Oryza sativa (japonica cultivar-group) Os04g0455900 (Os04g0455900) mRNA, complete cds Length = 1985 Score = 109 bits (55), Expect = 3e-20 Identities = 109/127 (85%) Strand = Plus / Plus Query: 144 ggagcctcgacgcctacccgaaggtgaacgaggacttctacagccgcaccctctccggcg 203 ||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct: 194 ggagcctggacgcctaccccaaggtgaacgaggacttctacagccgcacgctctccggcg 253 Query: 204 ggctcatcaccatcgtctcctccctcgctatcctcctccccttcttctcagagatccggt 263 | ||||||| ||| ||||||| ||| || ||||||| |||| |||| ||| |||| | Sbjct: 254 gcatcatcacgctcgcctcctccgtcgtcatgctcctcctcttcgtctccgagctccgat 313 Query: 264 tgtatct 270 | ||||| Sbjct: 314 tatatct 320 Score = 79.8 bits (40), Expect = 3e-11 Identities = 103/124 (83%) Strand = Plus / Plus Query: 521 catggtggaaggcttgaccacaatgaggtttactgtgggtcttgttatggttccgaagag 580 ||||| || |||||||| ||||||||| || ||||| |||||||||||| | ||||| Sbjct: 571 catggcggcaggcttgaacacaatgagacctattgtggctcttgttatggtgcggaagaa 630 Query: 581 tcagatgaccagtgttgtaactcctgtgaagaagttcgtgatgcctatcggaagaaaggt 640 || ||||| |||||||||||||| |||||||| ||||| || || || |||| |||||| Sbjct: 631 tctgatgagcagtgttgtaactcgtgtgaagatgttcgagaagcatacaggaaaaaaggt 690 Query: 641 tggg 644 |||| Sbjct: 691 tggg 694 Score = 77.8 bits (39), Expect = 1e-10 Identities = 60/67 (89%) Strand = Plus / Plus Query: 1209 ctggcatcatagattcatttgtgtaccatggtcatcgtgcaatcaagaagaagatggaga 1268 |||| ||||||||||||||||| |||||||| || | |||||||||||||||||||| | Sbjct: 1253 ctggaatcatagattcatttgtataccatggccagagagcaatcaagaagaagatggaaa 1312 Query: 1269 tcggaaa 1275 ||||||| Sbjct: 1313 tcggaaa 1319 Score = 52.0 bits (26), Expect = 0.006 Identities = 35/38 (92%) Strand = Plus / Plus Query: 758 gttgctggaaattttcactttgccccaggaaaaagctt 795 |||||||||||||| |||||||| ||||| |||||||| Sbjct: 808 gttgctggaaatttccactttgctccagggaaaagctt 845 Score = 44.1 bits (22), Expect = 1.5 Identities = 28/30 (93%) Strand = Plus / Plus Query: 1031 aatcagttttctgtgacggagcactttaga 1060 |||||||||||||||||||| || |||||| Sbjct: 1072 aatcagttttctgtgacggaacattttaga 1101
>dbj|AK121783.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033094A05, full insert sequence Length = 2103 Score = 109 bits (55), Expect = 3e-20 Identities = 109/127 (85%) Strand = Plus / Plus Query: 144 ggagcctcgacgcctacccgaaggtgaacgaggacttctacagccgcaccctctccggcg 203 ||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct: 195 ggagcctggacgcctaccccaaggtgaacgaggacttctacagccgcacgctctccggcg 254 Query: 204 ggctcatcaccatcgtctcctccctcgctatcctcctccccttcttctcagagatccggt 263 | ||||||| ||| ||||||| ||| || ||||||| |||| |||| ||| |||| | Sbjct: 255 gcatcatcacgctcgcctcctccgtcgtcatgctcctcctcttcgtctccgagctccgat 314 Query: 264 tgtatct 270 | ||||| Sbjct: 315 tatatct 321 Score = 77.8 bits (39), Expect = 1e-10 Identities = 60/67 (89%) Strand = Plus / Plus Query: 1209 ctggcatcatagattcatttgtgtaccatggtcatcgtgcaatcaagaagaagatggaga 1268 |||| ||||||||||||||||| |||||||| || | |||||||||||||||||||| | Sbjct: 1370 ctggaatcatagattcatttgtataccatggccagagagcaatcaagaagaagatggaaa 1429 Query: 1269 tcggaaa 1275 ||||||| Sbjct: 1430 tcggaaa 1436 Score = 71.9 bits (36), Expect = 7e-09 Identities = 102/124 (82%) Strand = Plus / Plus Query: 521 catggtggaaggcttgaccacaatgaggtttactgtgggtcttgttatggttccgaagag 580 ||||| || |||||||| ||||||||| || ||||| |||||||||||| | || || Sbjct: 570 catggcggcaggcttgaacacaatgagacctattgtggctcttgttatggtgcggaggaa 629 Query: 581 tcagatgaccagtgttgtaactcctgtgaagaagttcgtgatgcctatcggaagaaaggt 640 || ||||| |||||||||||||| |||||||| ||||| || || || |||| |||||| Sbjct: 630 tctgatgagcagtgttgtaactcgtgtgaagatgttcgagaagcatacaggaaaaaaggt 689 Query: 641 tggg 644 |||| Sbjct: 690 tggg 693 Score = 52.0 bits (26), Expect = 0.006 Identities = 35/38 (92%) Strand = Plus / Plus Query: 758 gttgctggaaattttcactttgccccaggaaaaagctt 795 |||||||||||||| |||||||| ||||| |||||||| Sbjct: 807 gttgctggaaatttccactttgctccagggaaaagctt 844 Score = 44.1 bits (22), Expect = 1.5 Identities = 28/30 (93%) Strand = Plus / Plus Query: 1031 aatcagttttctgtgacggagcactttaga 1060 |||||||||||||||||||| || |||||| Sbjct: 1189 aatcagttttctgtgacggaacattttaga 1218
>emb|CR855164.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0523F07, complete sequence Length = 111824 Score = 107 bits (54), Expect = 1e-19 Identities = 102/118 (86%) Strand = Plus / Minus Query: 144 ggagcctcgacgcctacccgaaggtgaacgaggacttctacagccgcaccctctccggcg 203 ||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct: 33379 ggagcctggacgcctaccccaaggtgaacgaggacttctacagccgcacgctctccggcg 33320 Query: 204 ggctcatcaccatcgtctcctccctcgctatcctcctccccttcttctcagagatccg 261 | ||||||| ||| ||||||| ||| || ||||||| |||| |||| ||| |||| Sbjct: 33319 gcatcatcacgctcgcctcctccgtcgtcatgctcctcctcttcgtctccgagctccg 33262 Score = 77.8 bits (39), Expect = 1e-10 Identities = 60/67 (89%) Strand = Plus / Minus Query: 1209 ctggcatcatagattcatttgtgtaccatggtcatcgtgcaatcaagaagaagatggaga 1268 |||| ||||||||||||||||| |||||||| || | |||||||||||||||||||| | Sbjct: 28867 ctggaatcatagattcatttgtataccatggccagagagcaatcaagaagaagatggaaa 28808 Query: 1269 tcggaaa 1275 ||||||| Sbjct: 28807 tcggaaa 28801 Score = 52.0 bits (26), Expect = 0.006 Identities = 35/38 (92%) Strand = Plus / Minus Query: 758 gttgctggaaattttcactttgccccaggaaaaagctt 795 |||||||||||||| |||||||| ||||| |||||||| Sbjct: 30387 gttgctggaaatttccactttgctccagggaaaagctt 30350 Score = 52.0 bits (26), Expect = 0.006 Identities = 56/66 (84%) Strand = Plus / Minus Query: 579 agtcagatgaccagtgttgtaactcctgtgaagaagttcgtgatgcctatcggaagaaag 638 |||| ||||| |||||||||||||| |||||||| ||||| || || || |||| |||| Sbjct: 30697 agtctgatgagcagtgttgtaactcgtgtgaagatgttcgagaagcatacaggaaaaaag 30638 Query: 639 gttggg 644 |||||| Sbjct: 30637 gttggg 30632
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 107 bits (54), Expect = 1e-19 Identities = 102/118 (86%) Strand = Plus / Minus Query: 144 ggagcctcgacgcctacccgaaggtgaacgaggacttctacagccgcaccctctccggcg 203 ||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct: 22786618 ggagcctggacgcctaccccaaggtgaacgaggacttctacagccgcacgctctccggcg 22786559 Query: 204 ggctcatcaccatcgtctcctccctcgctatcctcctccccttcttctcagagatccg 261 | ||||||| ||| ||||||| ||| || ||||||| |||| |||| ||| |||| Sbjct: 22786558 gcatcatcacgctcgcctcctccgtcgtcatgctcctcctcttcgtctccgagctccg 22786501 Score = 77.8 bits (39), Expect = 1e-10 Identities = 60/67 (89%) Strand = Plus / Minus Query: 1209 ctggcatcatagattcatttgtgtaccatggtcatcgtgcaatcaagaagaagatggaga 1268 |||| ||||||||||||||||| |||||||| || | |||||||||||||||||||| | Sbjct: 22782107 ctggaatcatagattcatttgtataccatggccagagagcaatcaagaagaagatggaaa 22782048 Query: 1269 tcggaaa 1275 ||||||| Sbjct: 22782047 tcggaaa 22782041 Score = 52.0 bits (26), Expect = 0.006 Identities = 35/38 (92%) Strand = Plus / Minus Query: 758 gttgctggaaattttcactttgccccaggaaaaagctt 795 |||||||||||||| |||||||| ||||| |||||||| Sbjct: 22783627 gttgctggaaatttccactttgctccagggaaaagctt 22783590 Score = 52.0 bits (26), Expect = 0.006 Identities = 56/66 (84%) Strand = Plus / Minus Query: 579 agtcagatgaccagtgttgtaactcctgtgaagaagttcgtgatgcctatcggaagaaag 638 |||| ||||| |||||||||||||| |||||||| ||||| || || || |||| |||| Sbjct: 22783937 agtctgatgagcagtgttgtaactcgtgtgaagatgttcgagaagcatacaggaaaaaag 22783878 Query: 639 gttggg 644 |||||| Sbjct: 22783877 gttggg 22783872
>emb|AL731584.3|OSJN00224 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0006M15, complete sequence Length = 143109 Score = 107 bits (54), Expect = 1e-19 Identities = 102/118 (86%) Strand = Plus / Minus Query: 144 ggagcctcgacgcctacccgaaggtgaacgaggacttctacagccgcaccctctccggcg 203 ||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct: 123814 ggagcctggacgcctaccccaaggtgaacgaggacttctacagccgcacgctctccggcg 123755 Query: 204 ggctcatcaccatcgtctcctccctcgctatcctcctccccttcttctcagagatccg 261 | ||||||| ||| ||||||| ||| || ||||||| |||| |||| ||| |||| Sbjct: 123754 gcatcatcacgctcgcctcctccgtcgtcatgctcctcctcttcgtctccgagctccg 123697 Score = 77.8 bits (39), Expect = 1e-10 Identities = 60/67 (89%) Strand = Plus / Minus Query: 1209 ctggcatcatagattcatttgtgtaccatggtcatcgtgcaatcaagaagaagatggaga 1268 |||| ||||||||||||||||| |||||||| || | |||||||||||||||||||| | Sbjct: 119303 ctggaatcatagattcatttgtataccatggccagagagcaatcaagaagaagatggaaa 119244 Query: 1269 tcggaaa 1275 ||||||| Sbjct: 119243 tcggaaa 119237 Score = 52.0 bits (26), Expect = 0.006 Identities = 35/38 (92%) Strand = Plus / Minus Query: 758 gttgctggaaattttcactttgccccaggaaaaagctt 795 |||||||||||||| |||||||| ||||| |||||||| Sbjct: 120823 gttgctggaaatttccactttgctccagggaaaagctt 120786 Score = 52.0 bits (26), Expect = 0.006 Identities = 56/66 (84%) Strand = Plus / Minus Query: 579 agtcagatgaccagtgttgtaactcctgtgaagaagttcgtgatgcctatcggaagaaag 638 |||| ||||| |||||||||||||| |||||||| ||||| || || || |||| |||| Sbjct: 121133 agtctgatgagcagtgttgtaactcgtgtgaagatgttcgagaagcatacaggaaaaaag 121074 Query: 639 gttggg 644 |||||| Sbjct: 121073 gttggg 121068
>dbj|AK063763.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-121-B02, full insert sequence Length = 1565 Score = 79.8 bits (40), Expect = 3e-11 Identities = 103/124 (83%) Strand = Plus / Plus Query: 521 catggtggaaggcttgaccacaatgaggtttactgtgggtcttgttatggttccgaagag 580 ||||| || |||||||| ||||||||| || ||||| |||||||||||| | ||||| Sbjct: 144 catggcggcaggcttgaacacaatgagacctattgtggctcttgttatggtgcggaagaa 203 Query: 581 tcagatgaccagtgttgtaactcctgtgaagaagttcgtgatgcctatcggaagaaaggt 640 || ||||| |||||||||||||| |||||||| ||||| || || || |||| |||||| Sbjct: 204 tctgatgagcagtgttgtaactcgtgtgaagatgttcgagaagcatacaggaaaaaaggt 263 Query: 641 tggg 644 |||| Sbjct: 264 tggg 267 Score = 77.8 bits (39), Expect = 1e-10 Identities = 60/67 (89%) Strand = Plus / Plus Query: 1209 ctggcatcatagattcatttgtgtaccatggtcatcgtgcaatcaagaagaagatggaga 1268 |||| ||||||||||||||||| |||||||| || | |||||||||||||||||||| | Sbjct: 826 ctggaatcatagattcatttgtataccatggccagagagcaatcaagaagaagatggaaa 885 Query: 1269 tcggaaa 1275 ||||||| Sbjct: 886 tcggaaa 892 Score = 52.0 bits (26), Expect = 0.006 Identities = 35/38 (92%) Strand = Plus / Plus Query: 758 gttgctggaaattttcactttgccccaggaaaaagctt 795 |||||||||||||| |||||||| ||||| |||||||| Sbjct: 381 gttgctggaaatttccactttgctccagggaaaagctt 418 Score = 44.1 bits (22), Expect = 1.5 Identities = 28/30 (93%) Strand = Plus / Plus Query: 1031 aatcagttttctgtgacggagcactttaga 1060 |||||||||||||||||||| || |||||| Sbjct: 645 aatcagttttctgtgacggaacattttaga 674
>gb|BT017531.1| Zea mays clone EL01N0421H02.c mRNA sequence Length = 615 Score = 73.8 bits (37), Expect = 2e-09 Identities = 76/89 (85%) Strand = Plus / Plus Query: 1184 attgttggaggaatattcaccgtggctggcatcatagattcatttgtgtaccatggtcat 1243 ||||||||||| | |||||||| |||| ||||||||||| ||||| |||||| |||| Sbjct: 91 attgttggaggtgtgttcaccgtttctggaatcatagattcgtttgtataccatagtcaa 150 Query: 1244 cgtgcaatcaagaagaagatggagatcgg 1272 | |||||||||||||||||||| ||||| Sbjct: 151 agagcaatcaagaagaagatggaaatcgg 179
>ref|XM_417322.2| PREDICTED: Gallus gallus ERGIC and golgi 3 (ERGIC3), mRNA Length = 2200 Score = 69.9 bits (35), Expect = 3e-08 Identities = 44/47 (93%) Strand = Plus / Plus Query: 749 gtcaataaagttgctggaaattttcactttgccccaggaaaaagctt 795 |||||||| || |||||||||||||||||||| |||||||||||||| Sbjct: 538 gtcaataaggtagctggaaattttcactttgcaccaggaaaaagctt 584
>emb|BX935829.1| Gallus gallus finished cDNA, clone ChEST165e2 Length = 1870 Score = 69.9 bits (35), Expect = 3e-08 Identities = 44/47 (93%) Strand = Plus / Plus Query: 749 gtcaataaagttgctggaaattttcactttgccccaggaaaaagctt 795 |||||||| || |||||||||||||||||||| |||||||||||||| Sbjct: 547 gtcaataaggtagctggaaattttcactttgcaccaggaaaaagctt 593
>emb|BX930991.1| Gallus gallus finished cDNA, clone ChEST67n24 Length = 1951 Score = 69.9 bits (35), Expect = 3e-08 Identities = 44/47 (93%) Strand = Plus / Plus Query: 749 gtcaataaagttgctggaaattttcactttgccccaggaaaaagctt 795 |||||||| || |||||||||||||||||||| |||||||||||||| Sbjct: 631 gtcaataaggtagctggaaattttcactttgcaccaggaaaaagctt 677
>gb|AY106972.1| Zea mays PCO143041 mRNA sequence Length = 1001 Score = 69.9 bits (35), Expect = 3e-08 Identities = 71/83 (85%) Strand = Plus / Plus Query: 1184 attgttggaggaatattcaccgtggctggcatcatagattcatttgtgtaccatggtcat 1243 ||||||||||| | |||||||| |||| ||||||||||| ||||| |||||| |||| Sbjct: 445 attgttggaggtgtgttcaccgtttctggaatcatagattcgtttgtataccatagtcaa 504 Query: 1244 cgtgcaatcaagaagaagatgga 1266 | |||||||||||||||||||| Sbjct: 505 agagcaatcaagaagaagatgga 527
>ref|NM_001062433.1| Oryza sativa (japonica cultivar-group) Os05g0490200 (Os05g0490200) mRNA, complete cds Length = 1874 Score = 63.9 bits (32), Expect = 2e-06 Identities = 56/64 (87%) Strand = Plus / Plus Query: 860 cacaagataaacaaattgtcctttgggaaagagttccctggtgttgtcaatcctcttgat 919 ||||| ||||| ||| |||| ||||||| ||| |||||||||||||| ||||| |||||| Sbjct: 950 cacaaaataaataaactgtcttttgggacagaattccctggtgttgttaatccacttgat 1009 Query: 920 ggtg 923 |||| Sbjct: 1010 ggtg 1013 Score = 58.0 bits (29), Expect = 1e-04 Identities = 47/53 (88%) Strand = Plus / Plus Query: 152 gacgcctacccgaaggtgaacgaggacttctacagccgcaccctctccggcgg 204 ||||| ||||| |||||||||||||||||||||| || || ||||||||||| Sbjct: 245 gacgcgtaccccaaggtgaacgaggacttctacaagcggacgctctccggcgg 297 Score = 42.1 bits (21), Expect = 6.0 Identities = 33/37 (89%) Strand = Plus / Plus Query: 378 ttgatactatggatgttagtggagagcaacattatga 414 ||||||| |||||| ||||||||||||| ||| |||| Sbjct: 471 ttgataccatggatattagtggagagcagcatcatga 507
>ref|NM_102070.2| Arabidopsis thaliana unknown protein (AT1G22200) mRNA, complete cds Length = 1576 Score = 63.9 bits (32), Expect = 2e-06 Identities = 182/232 (78%) Strand = Plus / Plus Query: 495 ctaagattgaaagaccattgcagaatcatggtggaaggcttgaccacaatgaggtttact 554 |||||||||||| ||| || || || |||||||||||| | || |||||||| |||| Sbjct: 534 ctaagattgaaaaacctttacaaaaacatggtggaaggttggaacacaatgaaacatact 593 Query: 555 gtgggtcttgttatggttccgaagagtcagatgaccagtgttgtaactcctgtgaagaag 614 |||| || |||| ||| | |||| ||||||||| |||||||| || ||||| |||| Sbjct: 594 gtggttcctgttttggagcagaagcgtcagatgatgcttgttgtaattcatgtgaggaag 653 Query: 615 ttcgtgatgcctatcggaagaaaggttgggcactcactaacgtagaatcaattgatcagt 674 |||| || || || || |||||||||||||| ||| | || |||||||| || |||| Sbjct: 654 ttcgcgaagcttaccgaaagaaaggttgggccctctcggaccctgaatcaatcgaccagt 713 Query: 675 gcaagagagagggcttcgttcaaaggttaaaagacgaacaaggcgaaggttg 726 | || ||||| ||||| || |||| | ||||||| ||| |||| |||||||| Sbjct: 714 gtaaaagagaaggctttgtgcaaaaggtaaaagatgaagaaggtgaaggttg 765 Score = 50.1 bits (25), Expect = 0.025 Identities = 46/53 (86%) Strand = Plus / Plus Query: 299 gttgatacctcaagaggggaaaggttacatattaattttgatgttacattccc 351 |||||||| |||||||| || | | ||| ||||||||||||||||||||||| Sbjct: 338 gttgatacatcaagaggagagaagctacggattaattttgatgttacattccc 390
>ref|NM_001036000.1| Arabidopsis thaliana unknown protein (AT1G22200) mRNA, complete cds Length = 1617 Score = 63.9 bits (32), Expect = 2e-06 Identities = 182/232 (78%) Strand = Plus / Plus Query: 495 ctaagattgaaagaccattgcagaatcatggtggaaggcttgaccacaatgaggtttact 554 |||||||||||| ||| || || || |||||||||||| | || |||||||| |||| Sbjct: 563 ctaagattgaaaaacctttacaaaaacatggtggaaggttggaacacaatgaaacatact 622 Query: 555 gtgggtcttgttatggttccgaagagtcagatgaccagtgttgtaactcctgtgaagaag 614 |||| || |||| ||| | |||| ||||||||| |||||||| || ||||| |||| Sbjct: 623 gtggttcctgttttggagcagaagcgtcagatgatgcttgttgtaattcatgtgaggaag 682 Query: 615 ttcgtgatgcctatcggaagaaaggttgggcactcactaacgtagaatcaattgatcagt 674 |||| || || || || |||||||||||||| ||| | || |||||||| || |||| Sbjct: 683 ttcgcgaagcttaccgaaagaaaggttgggccctctcggaccctgaatcaatcgaccagt 742 Query: 675 gcaagagagagggcttcgttcaaaggttaaaagacgaacaaggcgaaggttg 726 | || ||||| ||||| || |||| | ||||||| ||| |||| |||||||| Sbjct: 743 gtaaaagagaaggctttgtgcaaaaggtaaaagatgaagaaggtgaaggttg 794 Score = 50.1 bits (25), Expect = 0.025 Identities = 46/53 (86%) Strand = Plus / Plus Query: 299 gttgatacctcaagaggggaaaggttacatattaattttgatgttacattccc 351 |||||||| |||||||| || | | ||| ||||||||||||||||||||||| Sbjct: 367 gttgatacatcaagaggagagaagctacggattaattttgatgttacattccc 419
>gb|AY113908.1| Arabidopsis thaliana unknown protein (At1g22200) mRNA, complete cds Length = 1192 Score = 63.9 bits (32), Expect = 2e-06 Identities = 182/232 (78%) Strand = Plus / Plus Query: 495 ctaagattgaaagaccattgcagaatcatggtggaaggcttgaccacaatgaggtttact 554 |||||||||||| ||| || || || |||||||||||| | || |||||||| |||| Sbjct: 377 ctaagattgaaaaacctttacaaaaacatggtggaaggttggaacacaatgaaacatact 436 Query: 555 gtgggtcttgttatggttccgaagagtcagatgaccagtgttgtaactcctgtgaagaag 614 |||| || |||| ||| | |||| ||||||||| |||||||| || ||||| |||| Sbjct: 437 gtggttcctgttttggagcagaagcgtcagatgatgcttgttgtaattcatgtgaggaag 496 Query: 615 ttcgtgatgcctatcggaagaaaggttgggcactcactaacgtagaatcaattgatcagt 674 |||| || || || || |||||||||||||| ||| | || |||||||| || |||| Sbjct: 497 ttcgcgaagcttaccgaaagaaaggttgggccctctcggaccctgaatcaatcgaccagt 556 Query: 675 gcaagagagagggcttcgttcaaaggttaaaagacgaacaaggcgaaggttg 726 | || ||||| ||||| || |||| | ||||||| ||| |||| |||||||| Sbjct: 557 gtaaaagagaaggctttgtgcaaaaggtaaaagatgaagaaggtgaaggttg 608 Score = 50.1 bits (25), Expect = 0.025 Identities = 46/53 (86%) Strand = Plus / Plus Query: 299 gttgatacctcaagaggggaaaggttacatattaattttgatgttacattccc 351 |||||||| |||||||| || | | ||| ||||||||||||||||||||||| Sbjct: 181 gttgatacatcaagaggagagaagctacggattaattttgatgttacattccc 233
>gb|AF370338.1| Arabidopsis thaliana unknown protein (At1g22200) mRNA, complete cds Length = 1522 Score = 63.9 bits (32), Expect = 2e-06 Identities = 182/232 (78%) Strand = Plus / Plus Query: 495 ctaagattgaaagaccattgcagaatcatggtggaaggcttgaccacaatgaggtttact 554 |||||||||||| ||| || || || |||||||||||| | || |||||||| |||| Sbjct: 534 ctaagattgaaaaacctttacaaaaacatggtggaaggttggaacacaatgaaacatact 593 Query: 555 gtgggtcttgttatggttccgaagagtcagatgaccagtgttgtaactcctgtgaagaag 614 |||| || |||| ||| | |||| ||||||||| |||||||| || ||||| |||| Sbjct: 594 gtggttcctgttttggagcagaagcgtcagatgatgcttgttgtaattcatgtgaggaag 653 Query: 615 ttcgtgatgcctatcggaagaaaggttgggcactcactaacgtagaatcaattgatcagt 674 |||| || || || || |||||||||||||| ||| | || |||||||| || |||| Sbjct: 654 ttcgcgaagcttaccgaaagaaaggttgggccctctcggaccctgaatcaatcgaccagt 713 Query: 675 gcaagagagagggcttcgttcaaaggttaaaagacgaacaaggcgaaggttg 726 | || ||||| ||||| || |||| | ||||||| ||| |||| |||||||| Sbjct: 714 gtaaaagagaaggctttgtgcaaaaggtaaaagatgaagaaggtgaaggttg 765 Score = 50.1 bits (25), Expect = 0.025 Identities = 46/53 (86%) Strand = Plus / Plus Query: 299 gttgatacctcaagaggggaaaggttacatattaattttgatgttacattccc 351 |||||||| |||||||| || | | ||| ||||||||||||||||||||||| Sbjct: 338 gttgatacatcaagaggagagaagctacggattaattttgatgttacattccc 390
>gb|AY085626.1| Arabidopsis thaliana clone 16380 mRNA, complete sequence Length = 1540 Score = 63.9 bits (32), Expect = 2e-06 Identities = 182/232 (78%) Strand = Plus / Plus Query: 495 ctaagattgaaagaccattgcagaatcatggtggaaggcttgaccacaatgaggtttact 554 |||||||||||| ||| || || || |||||||||||| | || |||||||| |||| Sbjct: 517 ctaagattgaaaaacctttacaaaaacatggtggaaggttggaacacaatgaaacatact 576 Query: 555 gtgggtcttgttatggttccgaagagtcagatgaccagtgttgtaactcctgtgaagaag 614 |||| || |||| ||| | |||| ||||||||| |||||||| || ||||| |||| Sbjct: 577 gtggttcctgttttggagcagaagcgtcagatgatgcttgttgtaattcatgtgaggaag 636 Query: 615 ttcgtgatgcctatcggaagaaaggttgggcactcactaacgtagaatcaattgatcagt 674 |||| || || || || |||||||||||||| ||| | || |||||||| || |||| Sbjct: 637 ttcgcgaagcttaccgaaagaaaggttgggccctctcggaccctgaatcaatcgaccagt 696 Query: 675 gcaagagagagggcttcgttcaaaggttaaaagacgaacaaggcgaaggttg 726 | || ||||| ||||| || |||| | ||||||| ||| |||| |||||||| Sbjct: 697 gtaaaagagaaggctttgtgcaaaaggtaaaagatgaagaaggtgaaggttg 748 Score = 50.1 bits (25), Expect = 0.025 Identities = 46/53 (86%) Strand = Plus / Plus Query: 299 gttgatacctcaagaggggaaaggttacatattaattttgatgttacattccc 351 |||||||| |||||||| || | | ||| ||||||||||||||||||||||| Sbjct: 321 gttgatacatcaagaggagagaagctacggattaattttgatgttacattccc 373
>dbj|AK101147.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033026P06, full insert sequence Length = 1874 Score = 63.9 bits (32), Expect = 2e-06 Identities = 56/64 (87%) Strand = Plus / Plus Query: 860 cacaagataaacaaattgtcctttgggaaagagttccctggtgttgtcaatcctcttgat 919 ||||| ||||| ||| |||| ||||||| ||| |||||||||||||| ||||| |||||| Sbjct: 950 cacaaaataaataaactgtcttttgggacagaattccctggtgttgttaatccacttgat 1009 Query: 920 ggtg 923 |||| Sbjct: 1010 ggtg 1013 Score = 58.0 bits (29), Expect = 1e-04 Identities = 47/53 (88%) Strand = Plus / Plus Query: 152 gacgcctacccgaaggtgaacgaggacttctacagccgcaccctctccggcgg 204 ||||| ||||| |||||||||||||||||||||| || || ||||||||||| Sbjct: 246 gacgcgtaccccaaggtgaacgaggacttctacaagcggacgctctccggcgg 298 Score = 42.1 bits (21), Expect = 6.0 Identities = 33/37 (89%) Strand = Plus / Plus Query: 378 ttgatactatggatgttagtggagagcaacattatga 414 ||||||| |||||| ||||||||||||| ||| |||| Sbjct: 472 ttgataccatggatattagtggagagcagcatcatga 508
>dbj|AK073984.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033072O04, full insert sequence Length = 3048 Score = 63.9 bits (32), Expect = 2e-06 Identities = 56/64 (87%) Strand = Plus / Plus Query: 860 cacaagataaacaaattgtcctttgggaaagagttccctggtgttgtcaatcctcttgat 919 ||||| ||||| ||| |||| ||||||| ||| |||||||||||||| ||||| |||||| Sbjct: 1426 cacaaaataaataaactgtcttttgggacagaattccctggtgttgttaatccacttgat 1485 Query: 920 ggtg 923 |||| Sbjct: 1486 ggtg 1489 Score = 42.1 bits (21), Expect = 6.0 Identities = 33/37 (89%) Strand = Plus / Plus Query: 378 ttgatactatggatgttagtggagagcaacattatga 414 ||||||| |||||| ||||||||||||| ||| |||| Sbjct: 947 ttgataccatggatattagtggagagcagcatcatga 983
>gb|AC189414.1| Brassica rapa subsp. pekinensis clone KBrB061K11, complete sequence Length = 158635 Score = 61.9 bits (31), Expect = 6e-06 Identities = 58/67 (86%) Strand = Plus / Minus Query: 579 agtcagatgaccagtgttgtaactcctgtgaagaagttcgtgatgcctatcggaagaaag 638 |||||||||| ||||||||||||| ||||| |||||||| || || ||| | ||||||| Sbjct: 98729 agtcagatgatgagtgttgtaactcttgtgaggaagttcgggaagcttatagaaagaaag 98670 Query: 639 gttgggc 645 ||||||| Sbjct: 98669 gttgggc 98663 Score = 58.0 bits (29), Expect = 1e-04 Identities = 47/53 (88%) Strand = Plus / Minus Query: 152 gacgcctacccgaaggtgaacgaggacttctacagccgcaccctctccggcgg 204 ||||| ||||| ||| | ||||| ||||||||||||||||| ||||||||||| Sbjct: 99522 gacgcttaccccaagatcaacgacgacttctacagccgcactctctccggcgg 99470 Score = 50.1 bits (25), Expect = 0.025 Identities = 61/73 (83%) Strand = Plus / Minus Query: 498 agattgaaagaccattgcagaatcatggtggaaggcttgaccacaatgaggtttactgtg 557 ||||||||| ||||||||||| |||||||| ||||| || || ||||| ||| |||| Sbjct: 98881 agattgaaaatccattgcagaaacatggtgggaggctagagcataatgaaacttattgtg 98822 Query: 558 ggtcttgttatgg 570 | ||||||||||| Sbjct: 98821 gttcttgttatgg 98809 Score = 42.1 bits (21), Expect = 6.0 Identities = 51/61 (83%) Strand = Plus / Minus Query: 1209 ctggcatcatagattcatttgtgtaccatggtcatcgtgcaatcaagaagaagatggaga 1268 |||| ||||| ||||||||||| || ||||| || || || || ||||| |||||||||| Sbjct: 97293 ctggaatcattgattcatttgtatatcatggacaacgggcgataaagaaaaagatggaga 97234 Query: 1269 t 1269 | Sbjct: 97233 t 97233
>gb|AC173211.3| Gallus gallus BAC clone CH261-2F13 from chromosome ul, complete sequence Length = 204791 Score = 61.9 bits (31), Expect = 6e-06 Identities = 34/35 (97%) Strand = Plus / Plus Query: 761 gctggaaattttcactttgccccaggaaaaagctt 795 |||||||||||||||||||| |||||||||||||| Sbjct: 20028 gctggaaattttcactttgcaccaggaaaaagctt 20062
>gb|AC161469.3| Gallus gallus BAC clone CH261-69M17 from chromosome ul, complete sequence Length = 186443 Score = 61.9 bits (31), Expect = 6e-06 Identities = 34/35 (97%) Strand = Plus / Minus Query: 761 gctggaaattttcactttgccccaggaaaaagctt 795 |||||||||||||||||||| |||||||||||||| Sbjct: 88823 gctggaaattttcactttgcaccaggaaaaagctt 88789
>gb|AC129718.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0088I06, complete sequence Length = 187651 Score = 60.0 bits (30), Expect = 3e-05 Identities = 54/62 (87%) Strand = Plus / Plus Query: 860 cacaagataaacaaattgtcctttgggaaagagttccctggtgttgtcaatcctcttgat 919 ||||| ||||| ||| |||| ||||||| ||| |||||||||||||| ||||| |||||| Sbjct: 7849 cacaaaataaataaactgtcttttgggacagaattccctggtgttgttaatccacttgat 7908 Query: 920 gg 921 || Sbjct: 7909 gg 7910 Score = 58.0 bits (29), Expect = 1e-04 Identities = 47/53 (88%) Strand = Plus / Plus Query: 152 gacgcctacccgaaggtgaacgaggacttctacagccgcaccctctccggcgg 204 ||||| ||||| |||||||||||||||||||||| || || ||||||||||| Sbjct: 4648 gacgcgtaccccaaggtgaacgaggacttctacaagcggacgctctccggcgg 4700 Score = 42.1 bits (21), Expect = 6.0 Identities = 33/37 (89%) Strand = Plus / Plus Query: 378 ttgatactatggatgttagtggagagcaacattatga 414 ||||||| |||||| ||||||||||||| ||| |||| Sbjct: 5870 ttgataccatggatattagtggagagcagcatcatga 5906
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5 Length = 29737217 Score = 60.0 bits (30), Expect = 3e-05 Identities = 54/62 (87%) Strand = Plus / Plus Query: 860 cacaagataaacaaattgtcctttgggaaagagttccctggtgttgtcaatcctcttgat 919 ||||| ||||| ||| |||| ||||||| ||| |||||||||||||| ||||| |||||| Sbjct: 23939360 cacaaaataaataaactgtcttttgggacagaattccctggtgttgttaatccacttgat 23939419 Query: 920 gg 921 || Sbjct: 23939420 gg 23939421 Score = 58.0 bits (29), Expect = 1e-04 Identities = 47/53 (88%) Strand = Plus / Plus Query: 152 gacgcctacccgaaggtgaacgaggacttctacagccgcaccctctccggcgg 204 ||||| ||||| |||||||||||||||||||||| || || ||||||||||| Sbjct: 23936159 gacgcgtaccccaaggtgaacgaggacttctacaagcggacgctctccggcgg 23936211 Score = 42.1 bits (21), Expect = 6.0 Identities = 33/37 (89%) Strand = Plus / Plus Query: 378 ttgatactatggatgttagtggagagcaacattatga 414 ||||||| |||||| ||||||||||||| ||| |||| Sbjct: 23937381 ttgataccatggatattagtggagagcagcatcatga 23937417
>dbj|AK105601.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-A06, full insert sequence Length = 1630 Score = 58.0 bits (29), Expect = 1e-04 Identities = 47/53 (88%) Strand = Plus / Plus Query: 152 gacgcctacccgaaggtgaacgaggacttctacagccgcaccctctccggcgg 204 ||||| ||||| |||||||||||||||||||||| || || ||||||||||| Sbjct: 233 gacgcgtaccccaaggtgaacgaggacttctacaagcggacgctctccggcgg 285 Score = 56.0 bits (28), Expect = 4e-04 Identities = 55/64 (85%) Strand = Plus / Plus Query: 860 cacaagataaacaaattgtcctttgggaaagagttccctggtgttgtcaatcctcttgat 919 ||||| ||||| ||| |||| ||||||| ||| |||||||||||||| ||||| | |||| Sbjct: 938 cacaaaataaataaactgtcttttgggacagaattccctggtgttgttaatccacctgat 997 Query: 920 ggtg 923 |||| Sbjct: 998 ggtg 1001 Score = 42.1 bits (21), Expect = 6.0 Identities = 33/37 (89%) Strand = Plus / Plus Query: 378 ttgatactatggatgttagtggagagcaacattatga 414 ||||||| |||||| ||||||||||||| ||| |||| Sbjct: 459 ttgataccatggatattagtggagagcagcatcatga 495
>gb|AY108562.1| Zea mays PCO098370 mRNA sequence Length = 835 Score = 52.0 bits (26), Expect = 0.006 Identities = 32/34 (94%) Strand = Plus / Plus Query: 152 gacgcctacccgaaggtgaacgaggacttctaca 185 ||||| ||||| |||||||||||||||||||||| Sbjct: 265 gacgcgtaccccaaggtgaacgaggacttctaca 298
>gb|AY486730.1| Hevea brasiliensis clone gHbCIRA2489 microsatellite sequence Length = 704 Score = 50.1 bits (25), Expect = 0.025 Identities = 61/73 (83%) Strand = Plus / Minus Query: 579 agtcagatgaccagtgttgtaactcctgtgaagaagttcgtgatgcctatcggaagaaag 638 |||||||||| | ||||||||||| |||||| |||||||||| || || || || |||| Sbjct: 110 agtcagatgatgattgttgtaactcatgtgaacaagttcgtgaagcataccgtaaaaaag 51 Query: 639 gttgggcactcac 651 | ||| ||||||| Sbjct: 50 ggtggtcactcac 38
>ref|XM_395190.3| PREDICTED: Apis mellifera similar to PTX1 protein, transcript variant 1 (LOC411722), mRNA Length = 1450 Score = 48.1 bits (24), Expect = 0.098 Identities = 27/28 (96%) Strand = Plus / Plus Query: 747 atgtcaataaagttgctggaaattttca 774 |||| ||||||||||||||||||||||| Sbjct: 711 atgttaataaagttgctggaaattttca 738
>dbj|AK228108.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-58-O14 Length = 1540 Score = 48.1 bits (24), Expect = 0.098 Identities = 63/76 (82%) Strand = Plus / Plus Query: 495 ctaagattgaaagaccattgcagaatcatggtggaaggcttgaccacaatgaggtttact 554 |||||||||||| ||| ||||||| |||||||| ||||| | || |||||| ||||| Sbjct: 640 ctaagattgaaaacccactgcagaaacatggtggcaggctgggacataatgagacttact 699 Query: 555 gtgggtcttgttatgg 570 |||| ||||| ||||| Sbjct: 700 gtggttcttgctatgg 715
>ref|NM_103301.2| Arabidopsis thaliana unknown protein (AT1G36050) mRNA, complete cds Length = 1611 Score = 48.1 bits (24), Expect = 0.098 Identities = 63/76 (82%) Strand = Plus / Plus Query: 495 ctaagattgaaagaccattgcagaatcatggtggaaggcttgaccacaatgaggtttact 554 |||||||||||| ||| ||||||| |||||||| ||||| | || |||||| ||||| Sbjct: 640 ctaagattgaaaacccactgcagaaacatggtggcaggctgggacataatgagacttact 699 Query: 555 gtgggtcttgttatgg 570 |||| ||||| ||||| Sbjct: 700 gtggttcttgctatgg 715
>gb|BT003147.1| Arabidopsis thaliana At1g36050 mRNA, complete cds Length = 1161 Score = 48.1 bits (24), Expect = 0.098 Identities = 63/76 (82%) Strand = Plus / Plus Query: 495 ctaagattgaaagaccattgcagaatcatggtggaaggcttgaccacaatgaggtttact 554 |||||||||||| ||| ||||||| |||||||| ||||| | || |||||| ||||| Sbjct: 377 ctaagattgaaaacccactgcagaaacatggtggcaggctgggacataatgagacttact 436 Query: 555 gtgggtcttgttatgg 570 |||| ||||| ||||| Sbjct: 437 gtggttcttgctatgg 452
>emb|BX816168.1|CNS0AE9B Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH31ZG10 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1097 Score = 48.1 bits (24), Expect = 0.098 Identities = 63/76 (82%) Strand = Plus / Plus Query: 495 ctaagattgaaagaccattgcagaatcatggtggaaggcttgaccacaatgaggtttact 554 |||||||||||| ||| ||||||| |||||||| ||||| | || |||||| ||||| Sbjct: 160 ctaagattgaaaacccactgcagaaacatggtggcaggctgggacataatgagacttact 219 Query: 555 gtgggtcttgttatgg 570 |||| ||||| ||||| Sbjct: 220 gtggttcttgctatgg 235
>emb|CR388082.3| Mouse DNA sequence from clone RP23-330O23 on chromosome 4, complete sequence Length = 14619 Score = 46.1 bits (23), Expect = 0.39 Identities = 23/23 (100%) Strand = Plus / Minus Query: 235 cctcctccccttcttctcagaga 257 ||||||||||||||||||||||| Sbjct: 1383 cctcctccccttcttctcagaga 1361
>emb|AL954382.3| Mouse DNA sequence from clone RP23-214G6 on chromosome 4, complete sequence Length = 109456 Score = 46.1 bits (23), Expect = 0.39 Identities = 23/23 (100%) Strand = Plus / Minus Query: 235 cctcctccccttcttctcagaga 257 ||||||||||||||||||||||| Sbjct: 108839 cctcctccccttcttctcagaga 108817
>gb|AE005122.1| Halobacterium sp. NRC-1 section 153 of 170 of the complete genome Length = 10655 Score = 46.1 bits (23), Expect = 0.39 Identities = 23/23 (100%) Strand = Plus / Plus Query: 38 gcggcggcgacggcgagcgcgac 60 ||||||||||||||||||||||| Sbjct: 10061 gcggcggcgacggcgagcgcgac 10083
>gb|AC102045.14| Mus musculus chromosome 1, clone RP23-335P21, complete sequence Length = 190825 Score = 46.1 bits (23), Expect = 0.39 Identities = 23/23 (100%) Strand = Plus / Minus Query: 235 cctcctccccttcttctcagaga 257 ||||||||||||||||||||||| Sbjct: 90111 cctcctccccttcttctcagaga 90089
>dbj|AB278269.1| Mesechthistatus binodosus mitochondrial COI gene for cytochrome oxidase subunit I, partial cds, isolate: BIN-tho-2 Length = 1144 Score = 44.1 bits (22), Expect = 1.5 Identities = 25/26 (96%) Strand = Plus / Minus Query: 1475 aggcttcttttttcttactctcttgt 1500 ||||||||||||| |||||||||||| Sbjct: 398 aggcttcttttttattactctcttgt 373
>dbj|AB278268.1| Mesechthistatus binodosus mitochondrial COI gene for cytochrome oxidase subunit I, partial cds, isolate: BIN-tho-1 Length = 1144 Score = 44.1 bits (22), Expect = 1.5 Identities = 25/26 (96%) Strand = Plus / Minus Query: 1475 aggcttcttttttcttactctcttgt 1500 ||||||||||||| |||||||||||| Sbjct: 398 aggcttcttttttattactctcttgt 373
>gb|BC080394.1| Xenopus laevis MGC83277 protein, mRNA (cDNA clone MGC:83277 IMAGE:6862802), complete cds Length = 4277 Score = 44.1 bits (22), Expect = 1.5 Identities = 25/26 (96%) Strand = Plus / Plus Query: 770 tttcactttgccccaggaaaaagctt 795 |||||||||||||| ||||||||||| Sbjct: 705 tttcactttgcccctggaaaaagctt 730
>emb|AL513327.34| Human DNA sequence from clone RP11-415J8 on chromosome 1 Contains the gene for a novel protein (FLJ35476), the gene for a novel protein similar to ABO family protein, two novel genes, the PHC2 gene for polyhomeotic-like 2 (Drosophila) and two CpG islands, complete sequence Length = 188665 Score = 44.1 bits (22), Expect = 1.5 Identities = 22/22 (100%) Strand = Plus / Plus Query: 38 gcggcggcgacggcgagcgcga 59 |||||||||||||||||||||| Sbjct: 54016 gcggcggcgacggcgagcgcga 54037
>gb|AC140344.3| Mus musculus BAC clone RP23-237M10 from chromosome 12, complete sequence Length = 205862 Score = 44.1 bits (22), Expect = 1.5 Identities = 22/22 (100%) Strand = Plus / Minus Query: 236 ctcctccccttcttctcagaga 257 |||||||||||||||||||||| Sbjct: 132084 ctcctccccttcttctcagaga 132063
>gb|AC021513.9| Homo sapiens chromosome 17, clone RP11-281G10, complete sequence Length = 176169 Score = 44.1 bits (22), Expect = 1.5 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1393 agaatactatattattgtaatg 1414 |||||||||||||||||||||| Sbjct: 118351 agaatactatattattgtaatg 118372
>emb|BX323870.13| Zebrafish DNA sequence from clone DKEYP-70G1 in linkage group 5, complete sequence Length = 187646 Score = 44.1 bits (22), Expect = 1.5 Identities = 25/26 (96%) Strand = Plus / Plus Query: 323 ttacatattaattttgatgttacatt 348 |||||||||| ||||||||||||||| Sbjct: 107915 ttacatattatttttgatgttacatt 107940
>emb|BX323563.10| Zebrafish DNA sequence from clone DKEY-20J10 in linkage group 5, complete sequence Length = 97393 Score = 44.1 bits (22), Expect = 1.5 Identities = 25/26 (96%) Strand = Plus / Minus Query: 323 ttacatattaattttgatgttacatt 348 |||||||||| ||||||||||||||| Sbjct: 25812 ttacatattatttttgatgttacatt 25787
>gb|AC006079.1|AC006079 Homo sapiens chromosome 17, clone hRPK.855_D_21, complete sequence Length = 178109 Score = 44.1 bits (22), Expect = 1.5 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1393 agaatactatattattgtaatg 1414 |||||||||||||||||||||| Sbjct: 123797 agaatactatattattgtaatg 123818
>gb|DQ245976.1| Zea mays clone 93816 mRNA sequence Length = 970 Score = 42.1 bits (21), Expect = 6.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 203 gggctcatcaccatcgtctcctccc 227 ||||||||||||| ||||||||||| Sbjct: 164 gggctcatcaccaccgtctcctccc 140
>gb|CP000463.1| Rhodopseudomonas palustris BisA53, complete genome Length = 5505494 Score = 42.1 bits (21), Expect = 6.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 35 gtcgcggcggcgacggcgagcgcga 59 |||||||||||||||| |||||||| Sbjct: 734564 gtcgcggcggcgacggtgagcgcga 734588
>ref|NM_001067356.1| Oryza sativa (japonica cultivar-group) Os08g0110600 (Os08g0110600) mRNA, complete cds Length = 750 Score = 42.1 bits (21), Expect = 6.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 37 cgcggcggcgacggcgagcgcgaca 61 ||||||||||| ||||||||||||| Sbjct: 231 cgcggcggcgatggcgagcgcgaca 207
>emb|CR391947.13| Zebrafish DNA sequence from clone DKEYP-88A4 in linkage group 1, complete sequence Length = 167207 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 236 ctcctccccttcttctcagag 256 ||||||||||||||||||||| Sbjct: 84148 ctcctccccttcttctcagag 84128
>ref|NM_001033105.1| Danio rerio zgc:113959 (zgc:113959), mRNA gb|BC100125.1| Danio rerio zgc:113959, mRNA (cDNA clone MGC:113959 IMAGE:5604959), complete cds Length = 2011 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 961 gatgtaccagtattttgtgaa 981 ||||||||||||||||||||| Sbjct: 885 gatgtaccagtattttgtgaa 905
>gb|AC124362.3| Mus musculus BAC clone RP24-528N1 from chromosome 13, complete sequence Length = 173382 Score = 42.1 bits (21), Expect = 6.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 233 atcctcctccccttcttctcagaga 257 |||||||||||||||||||| |||| Sbjct: 79719 atcctcctccccttcttctctgaga 79743
>gb|AC124752.4| Mus musculus BAC clone RP23-283G18 from 13, complete sequence Length = 215435 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 237 tcctccccttcttctcagaga 257 ||||||||||||||||||||| Sbjct: 96752 tcctccccttcttctcagaga 96772
>gb|AC080005.24| Homo sapiens 3 BAC RP11-475N22 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 169583 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1373 ctcaggaggaattttggtcaa 1393 ||||||||||||||||||||| Sbjct: 133947 ctcaggaggaattttggtcaa 133967
>gb|AC004673.1| Homo sapiens X BAC GSHB-590J15 (Genome Systems Human BAC library) complete sequence Length = 236281 Score = 42.1 bits (21), Expect = 6.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 324 tacatattaattttgatgttacatt 348 |||| |||||||||||||||||||| Sbjct: 39081 tacacattaattttgatgttacatt 39105
>emb|CR730968.2|CNS0GQYL Tetraodon nigroviridis full-length cDNA Length = 1301 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1247 gcaatcaagaagaagatggag 1267 ||||||||||||||||||||| Sbjct: 230 gcaatcaagaagaagatggag 250
>emb|CR709871.2|CNS0GAOR Tetraodon nigroviridis full-length cDNA Length = 515 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 117 gagagatggagctgtggagca 137 ||||||||||||||||||||| Sbjct: 52 gagagatggagctgtggagca 72
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8 Length = 28434780 Score = 42.1 bits (21), Expect = 6.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 37 cgcggcggcgacggcgagcgcgaca 61 ||||||||||| ||||||||||||| Sbjct: 551697 cgcggcggcgatggcgagcgcgaca 551721
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 37 cgcggcggcgacggcgagcgc 57 ||||||||||||||||||||| Sbjct: 3566612 cgcggcggcgacggcgagcgc 3566592 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 38 gcggcggcgacggcgagcgcg 58 ||||||||||||||||||||| Sbjct: 7550816 gcggcggcgacggcgagcgcg 7550796
>ref|XM_703705.1| PREDICTED: Danio rerio similar to Serologically defined breast cancer antigen 84, transcript variant 3 (LOC573369), mRNA Length = 1991 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 961 gatgtaccagtattttgtgaa 981 ||||||||||||||||||||| Sbjct: 895 gatgtaccagtattttgtgaa 915
>ref|XM_703704.1| PREDICTED: Danio rerio similar to Serologically defined breast cancer antigen 84, transcript variant 2 (LOC573369), mRNA Length = 2033 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 961 gatgtaccagtattttgtgaa 981 ||||||||||||||||||||| Sbjct: 937 gatgtaccagtattttgtgaa 957
>ref|XM_682440.1| PREDICTED: Danio rerio similar to Serologically defined breast cancer antigen 84, transcript variant 1 (LOC573369), mRNA Length = 1976 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 961 gatgtaccagtattttgtgaa 981 ||||||||||||||||||||| Sbjct: 880 gatgtaccagtattttgtgaa 900
>emb|CR762396.8| Zebrafish DNA sequence from clone DKEY-262O12 in linkage group 1, complete sequence Length = 163635 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 236 ctcctccccttcttctcagag 256 ||||||||||||||||||||| Sbjct: 65302 ctcctccccttcttctcagag 65282
>ref|NM_201015.1| Danio rerio ERGIC and golgi 3 (ergic3), mRNA gb|BC044474.1| Danio rerio ERGIC and golgi 3, mRNA (cDNA clone MGC:55762 IMAGE:3816665), complete cds Length = 1989 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 961 gatgtaccagtattttgtgaa 981 ||||||||||||||||||||| Sbjct: 870 gatgtaccagtattttgtgaa 890
>emb|AL669915.8| Mouse DNA sequence from clone RP23-13B21 on chromosome 11 no genes, complete sequence Length = 193440 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 754 taaagttgctggaaattttca 774 ||||||||||||||||||||| Sbjct: 191161 taaagttgctggaaattttca 191141
>dbj|BA000001.2| Pyrococcus horikoshii OT3 DNA, complete genome Length = 1738505 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 223 ctccctcgctatcctcctccc 243 ||||||||||||||||||||| Sbjct: 1214429 ctccctcgctatcctcctccc 1214449
>dbj|AP004070.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1705_E12 Length = 191416 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 38 gcggcggcgacggcgagcgcg 58 ||||||||||||||||||||| Sbjct: 144522 gcggcggcgacggcgagcgcg 144502
>dbj|AP004863.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0023I17 Length = 141852 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 37 cgcggcggcgacggcgagcgc 57 ||||||||||||||||||||| Sbjct: 111407 cgcggcggcgacggcgagcgc 111387
>dbj|AP005804.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0085K21 Length = 180714 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 37 cgcggcggcgacggcgagcgc 57 ||||||||||||||||||||| Sbjct: 47902 cgcggcggcgacggcgagcgc 47882
>dbj|AP004584.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0007D08 Length = 183142 Score = 42.1 bits (21), Expect = 6.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 37 cgcggcggcgacggcgagcgcgaca 61 ||||||||||| ||||||||||||| Sbjct: 141657 cgcggcggcgatggcgagcgcgaca 141681
>gb|AC073942.2|F16L1 Sequence of BAC F16L1 from Arabidopsis thaliana chromosome 1, complete sequence Length = 36030 Score = 42.1 bits (21), Expect = 6.0 Identities = 45/53 (84%) Strand = Plus / Plus Query: 593 tgttgtaactcctgtgaagaagttcgtgatgcctatcggaagaaaggttgggc 645 |||||||| || ||||| |||||||| || || || || |||||||||||||| Sbjct: 20853 tgttgtaattcatgtgaggaagttcgcgaagcttaccgaaagaaaggttgggc 20905
>gb|AF096871.1|AF096871 Zea mays calcium ATPase (cap1) mRNA, complete cds Length = 3310 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 40 ggcggcgacggcgagcgcgac 60 ||||||||||||||||||||| Sbjct: 906 ggcggcgacggcgagcgcgac 886
>emb|BX649289.11| Zebrafish DNA sequence from clone DKEY-231H5 in linkage group 20, complete sequence Length = 124708 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 961 gatgtaccagtattttgtgaa 981 ||||||||||||||||||||| Sbjct: 66458 gatgtaccagtattttgtgaa 66438
>gb|AC153975.4| Mus musculus 10 BAC RP24-186L12 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 145072 Score = 42.1 bits (21), Expect = 6.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 850 caatataagccacaagataaacaaa 874 ||||||||||||||| ||||||||| Sbjct: 78554 caatataagccacaatataaacaaa 78530
>emb|BX649240.1| Sminthopsis DNA sequence from clone RZPD668-284I24, complete sequence Length = 42474 Score = 42.1 bits (21), Expect = 6.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 869 aacaaattgtcctttgggaaagagt 893 |||||||||||| |||||||||||| Sbjct: 16491 aacaaattgtcccttgggaaagagt 16515
>emb|AL117204.1|CEY116A8C Caenorhabditis elegans YAC Y116A8C, complete sequence Length = 260341 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 458 aatgtaattgaatcaagaaaa 478 ||||||||||||||||||||| Sbjct: 72312 aatgtaattgaatcaagaaaa 72332
>gb|AC140406.3| Mus musculus BAC clone RP23-141L18 from 14, complete sequence Length = 213612 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 945 caactggattgacagggatgt 965 ||||||||||||||||||||| Sbjct: 82879 caactggattgacagggatgt 82859
>gb|AC133510.3| Mus musculus BAC clone RP23-409B11 from 8, complete sequence Length = 195449 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 238 cctccccttcttctcagagat 258 ||||||||||||||||||||| Sbjct: 28800 cctccccttcttctcagagat 28820
>gb|AF008191.1|AF008191 Homo sapiens putative G6 protein (GR6) gene, complete cds Length = 24903 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1373 ctcaggaggaattttggtcaa 1393 ||||||||||||||||||||| Sbjct: 1106 ctcaggaggaattttggtcaa 1126 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 309,504,719 Number of extensions: 16914944 Number of successful extensions: 389864 Number of sequences better than 10.0: 84 Number of HSP's gapped: 389852 Number of HSP's successfully gapped: 147 Length of query: 1583 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1560 Effective length of database: 18,503,978,556 Effective search space: 28866206547360 Effective search space used: 28866206547360 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
