>Q3TEI4:CO039_MOUSE Uncharacterized protein C15orf39 homolog - Mus musculus (Mouse)|
          Length = 1023
 Score = 36.6 bits (83), Expect = 0.19
 Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 5/114 (4%)
 Frame = +3

Query: 24  RTSPLPAQATAALHPSLPTPVPATVALRRCAHTPADTHRGSLPVHVHVCTHWRSSSLLHG 203
           RT+P+PA   ++  P+ P PVPA    +   + P      S+PV + + T     +  + 
Sbjct: 640 RTAPVPAAIVSS--PTTPAPVPAPAPAQPVPNPP------SVPVGLQILTQPLPVACFNL 691

Query: 204 CMCEPPQLV-----AGSPPRLRATAQLSAGACSPLRALAQLALPCWRSVLEHFS 350
            +  PP +V     A +PP   A A   A   +P  A    A P   S  +HF+
Sbjct: 692 ALPSPPAIVASPAPASAPPPSPAPAPAPASGPAPSSAQVPTAAPV-DSPEQHFT 744

>O15524:SOCS1_HUMAN Suppressor of cytokine signaling 1 - Homo sapiens (Human)|
          Length = 211

 Score = 35.8 bits (81), Expect = 0.33
 Identities = 27/81 (33%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
 Frame = +3

Query: 18  RRRTSPLPAQATAALHPSLPTPVPATVALRRCAHTPADTHRGSLPVHVHVCTHWRSSSLL 197
           RRR  P  + +++   P+ P P PA       A  P DTH  +   H       R+S+LL
Sbjct: 20  RRRPEPSSSSSSSPAAPARPRPCPAVP-----APAPGDTHFRTFRSHADYRRITRASALL 74

Query: 198 HGC-MCEPPQLVAGSPPRLRA 257
             C     P  V G+  RLRA
Sbjct: 75  DACGFYWGPLSVHGAHERLRA 95

>Q80U40:RIMB2_MOUSE RIM-binding protein 2 - Mus musculus (Mouse)|
          Length = 1072

 Score = 35.0 bits (79), Expect = 0.56
 Identities = 26/73 (35%), Positives = 31/73 (42%), Gaps = 6/73 (8%)
 Frame = +3

Query: 48  ATAALHPSL---PTPVPATVALRRCAHTPADTHRGSLPVHVHVCTHW---RSSSLLHGCM 209
           A AA+ P L   P P P T    +   +  DT    L  HV V   W   RS    HG M
Sbjct: 591 ALAAIPPDLLVPPAPHPRTAPPPKPLASDMDTKDQHLGPHVKVDESWEQSRSPGPAHGHM 650

Query: 210 CEPPQLVAGSPPR 248
            EPP + +  P R
Sbjct: 651 LEPPDMHSAGPGR 663

>Q8N4B1:F109A_HUMAN Protein FAM109A - Homo sapiens (Human)|
          Length = 249

 Score = 33.5 bits (75), Expect = 1.6
 Identities = 28/92 (30%), Positives = 37/92 (40%), Gaps = 5/92 (5%)
 Frame = +3

Query: 3   ALPLARRRTSPLPAQATAALHP-----SLPTPVPATVALRRCAHTPADTHRGSLPVHVHV 167
           ALP  + ++ PLP    +AL P     S P PVPA          P      +LP   + 
Sbjct: 137 ALPQPQPQSLPLPPSLPSALAPVPSLPSAPAPVPA---------LPLPRRPSALPPKENG 187

Query: 168 CTHWRSSSLLHGCMCEPPQLVAGSPPRLRATA 263
           C  W + +        PP      PPR RA+A
Sbjct: 188 CAVWSTEATFRPGPEPPP-----PPPRRRASA 214

>O92530:POLG_HCVVN Genome polyprotein [Contains: Core protein p21 - Hepatitis C virus|
            genotype 6d (isolate VN235) (HCV)
          Length = 3013

 Score = 32.7 bits (73), Expect = 2.8
 Identities = 19/41 (46%), Positives = 22/41 (53%)
 Frame = +3

Query: 192  LLHGCMCEPPQLVAGSPPRLRATAQLSAGACSPLRALAQLA 314
            L+HGC   P  L    PPR +   QL  G  S  RALA+LA
Sbjct: 2309 LVHGCALPPKGLPPVPPPRKKRVVQLDEG--SAKRALAELA 2347

>Q03645:MSA2_PLAFZ Merozoite surface antigen 2 precursor - Plasmodium falciparum|
           (isolate mad71 / Papua New Guinea)
          Length = 300

 Score = 32.3 bits (72), Expect = 3.7
 Identities = 18/41 (43%), Positives = 21/41 (51%)
 Frame = -3

Query: 127 AGVCAHRRRATVAGTGVGKLGWSAAVACAGSGEVRRRASGN 5
           AG  A      VAG+G G +  S A A AGSG V    +GN
Sbjct: 72  AGAVAGSGAGAVAGSGAGAVAGSGAGAVAGSGAVAGSGAGN 112

>Q03644:MSA2_PLAFI Merozoite surface antigen 2 precursor - Plasmodium falciparum|
           (isolate imr143)
          Length = 300

 Score = 32.3 bits (72), Expect = 3.7
 Identities = 18/41 (43%), Positives = 21/41 (51%)
 Frame = -3

Query: 127 AGVCAHRRRATVAGTGVGKLGWSAAVACAGSGEVRRRASGN 5
           AG  A      VAG+G G +  S A A AGSG V    +GN
Sbjct: 72  AGAVAGSGAGAVAGSGAGAVAGSGAGAVAGSGAVAGSGAGN 112

>P03211:EBNA1_EBV Epstein-Barr nuclear antigen 1 - Epstein-Barr virus (strain B95-8)|
           (HHV-4) (Human herpesvirus 4)
          Length = 641

 Score = 32.3 bits (72), Expect = 3.7
 Identities = 27/97 (27%), Positives = 35/97 (36%)
 Frame = -3

Query: 322 QGRASCANARRGEQAPAESCAVARRRGGEPATSCGGSHMHP*SKDELRQCVQTCTCTGNE 143
           +G       RRG           R RGG    + GGS   P  +D +R+  +  +C G  
Sbjct: 24  EGSGGSGPQRRGGDNHGRGRGRGRGRGGGRPGAPGGSGSGPRHRDGVRRPQKRPSCIG-- 81

Query: 142 PRWVSAGVCAHRRRATVAGTGVGKLGWSAAVACAGSG 32
                   C      T AG G G  G   A A  G+G
Sbjct: 82  --------CKGTHGGTGAGAGAGGAGAGGAGAGGGAG 110

>Q8BSN9:FAKD3_MOUSE FAST kinase domain-containing protein 3 - Mus musculus (Mouse)|
          Length = 661

 Score = 31.2 bits (69), Expect = 8.1
 Identities = 20/61 (32%), Positives = 29/61 (47%)
 Frame = +3

Query: 48  ATAALHPSLPTPVPATVALRRCAHTPADTHRGSLPVHVHVCTHWRSSSLLHGCMCEPPQL 227
           A  +L   LP    +++ L   A       RG+L VH H+C    S ++L G  CE  +L
Sbjct: 181 ALQSLLTLLPADPQSSLMLSLVAECQRRLQRGNLEVH-HLCVLGESLAMLQGASCETLKL 239

Query: 228 V 230
           V
Sbjct: 240 V 240

>Q9H4E7:DEFI6_HUMAN Differentially expressed in FDCP 6 - Homo sapiens (Human)|
          Length = 631

 Score = 31.2 bits (69), Expect = 8.1
 Identities = 19/78 (24%), Positives = 38/78 (48%)
 Frame = -2

Query: 353 KREMFQNTSPAGEGELRQCAQGRASTRGELRCRAQAWGRTRDELRWLTHASVKQG*TAPM 174
           +R   +    A EG+LR+  Q RAS + E+  + +   R R  ++ L    ++Q     +
Sbjct: 385 RRSQHRELQQALEGQLREAEQARASMQAEMELKEEEAARQRQRIKEL--EEMQQRLQEAL 442

Query: 173 RADVHMHRQRAAVGISRS 120
           + +V   R   +V I+++
Sbjct: 443 QLEVKARRDEESVRIAQT 460


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 173,281,027
Number of extensions: 3833682
Number of successful extensions: 12905
Number of sequences better than 10.0: 10
Number of HSP's gapped: 12875
Number of HSP's successfully gapped: 10
Length of query: 375
Length of database: 100,686,439
Length adjustment: 115
Effective length of query: 260
Effective length of database: 69,142,514
Effective search space: 17977053640
Effective search space used: 17977053640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)