Clone Name | FLbaf92g05 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_001049369.1| Oryza sativa (japonica cultivar-group) Os01g0303600 (Os01g0303600) mRNA, partial cds Length = 910 Score = 184 bits (93), Expect = 4e-43 Identities = 171/197 (86%) Strand = Plus / Plus Query: 141 atgatgcagtgcaggatctgccacgaggaggaggacgagagctccgcggcaatggagtct 200 |||| |||||||||||||||||| ||||||||||| || | | | | || |||||||| Sbjct: 130 atgaggcagtgcaggatctgccatgaggaggaggaggaagggtgcaccgccatggagtcc 189 Query: 201 ccctgcgcgtgctccggctctctcaagtacgcgcacaggggatgcgtgcagaggtggtgc 260 ||||||| ||||| ||||| |||||||||||||||||||| || |||||||| |||||| Sbjct: 190 ccctgcggatgctctggctccctcaagtacgcgcacagggggtgtgtgcagagatggtgc 249 Query: 261 gacgagaaggggagcaccctctgcgagatttgccttcagggtttcgagccaggctacaca 320 || |||||||||||||| ||||||||||||||||||||| |||||| ||||||||||| Sbjct: 250 gatgagaaggggagcacgctctgcgagatttgccttcagaatttcgaaccaggctacact 309 Query: 321 gtccctcccaagaaagc 337 | |||||||||||||| Sbjct: 310 gctcctcccaagaaagc 326 Score = 44.1 bits (22), Expect = 0.94 Identities = 28/30 (93%) Strand = Plus / Plus Query: 609 atcttgctgccgctctacgccgtcatgagg 638 |||||||||||| |||||| |||||||||| Sbjct: 595 atcttgctgccgttctacgtcgtcatgagg 624
>dbj|AK099496.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013027L08, full insert sequence Length = 912 Score = 176 bits (89), Expect = 1e-40 Identities = 170/197 (86%) Strand = Plus / Plus Query: 141 atgatgcagtgcaggatctgccacgaggaggaggacgagagctccgcggcaatggagtct 200 |||| |||||||||||||||||| ||||||||||| || | | | | || |||||||| Sbjct: 132 atgaggcagtgcaggatctgccatgaggaggaggaggaagggtgcaccgccatggagtcc 191 Query: 201 ccctgcgcgtgctccggctctctcaagtacgcgcacaggggatgcgtgcagaggtggtgc 260 ||||||| ||||| ||||| |||||||||||||||||||| || |||||||| |||||| Sbjct: 192 ccctgcggatgctctggctccctcaagtacgcgcacagggggtgtgtgcagagatggtgc 251 Query: 261 gacgagaaggggagcaccctctgcgagatttgccttcagggtttcgagccaggctacaca 320 || |||||||||||||| ||||||||||||| ||||||| |||||| ||||||||||| Sbjct: 252 gatgagaaggggagcacgctctgcgagatttcccttcagaatttcgaaccaggctacact 311 Query: 321 gtccctcccaagaaagc 337 | |||||||||||||| Sbjct: 312 gctcctcccaagaaagc 328 Score = 44.1 bits (22), Expect = 0.94 Identities = 28/30 (93%) Strand = Plus / Plus Query: 609 atcttgctgccgctctacgccgtcatgagg 638 |||||||||||| |||||| |||||||||| Sbjct: 597 atcttgctgccgttctacgtcgtcatgagg 626
>ref|NM_001061824.1| Oryza sativa (japonica cultivar-group) Os05g0355300 (Os05g0355300) mRNA, complete cds Length = 750 Score = 149 bits (75), Expect = 2e-32 Identities = 162/191 (84%) Strand = Plus / Plus Query: 146 gcagtgcaggatctgccacgaggaggaggacgagagctccgcggcaatggagtctccctg 205 |||||||||||| ||||| ||||||||||| ||| | | ||| ||||| ||||| ||||| Sbjct: 102 gcagtgcaggatttgccatgaggaggaggatgagtggtgcgctgcaattgagtccccctg 161 Query: 206 cgcgtgctccggctctctcaagtacgcgcacaggggatgcgtgcagaggtggtgcgacga 265 | ||||| |||||||||||||| || ||||||||||| |||||||||||||| || || Sbjct: 162 tggatgctctggctctctcaagtatgctcacaggggatgtgtgcagaggtggtgtgatga 221 Query: 266 gaaggggagcaccctctgcgagatttgccttcagggtttcgagccaggctacacagtccc 325 |||||||||||| ||||| ||||||||||| ||| ||| ||| ||| ||||| |||| Sbjct: 222 gaaggggagcacactctgtgagatttgcctccagaattttgagtcagattacaccatccc 281 Query: 326 tcccaagaaag 336 ||||||||||| Sbjct: 282 tcccaagaaag 292 Score = 91.7 bits (46), Expect = 4e-15 Identities = 148/182 (81%) Strand = Plus / Plus Query: 477 tggtgccggccattggcgataacgttcaccatcatcctgctggtgtggcatctcatcgcc 536 |||||||| ||||| |||||||||||||||| || |||||||||||||||||||| || Sbjct: 418 tggtgccgatcattgacgataacgttcaccattatgctgctggtgtggcatctcattgca 477 Query: 537 gtggtgaccatcgaggccgcggagcactgcgcgttcagcctcctcacgatgtaccttctt 596 |||||||| || || || ||||| ||||| || |||||||| |||| || | | | ||| Sbjct: 478 gtggtgacaattgaagcggcggatcactgtgcattcagccttgtcacaatattcttactt 537 Query: 597 cgggccacggggatcttgctgccgctctacgccgtcatgagggtggtccgaatgatccag 656 ||||| | || |||||| ||||| |||| || ||||| || ||||||| ||||| ||| Sbjct: 538 cgggctgctggaatcttgttgccgttctatgctatcatgcggatggtccgcatgattcag 597 Query: 657 ca 658 || Sbjct: 598 ca 599
>gb|DQ245598.1| Zea mays clone 18031 mRNA sequence Length = 964 Score = 123 bits (62), Expect = 1e-24 Identities = 116/134 (86%) Strand = Plus / Plus Query: 213 tccggctctctcaagtacgcgcacaggggatgcgtgcagaggtggtgcgacgagaagggg 272 |||||||||||||||||||| |||||| |||| |||||||| ||||| || ||||||||| Sbjct: 178 tccggctctctcaagtacgctcacaggcgatgtgtgcagagatggtgtgatgagaagggg 237 Query: 273 agcaccctctgcgagatttgccttcagggtttcgagccaggctacacagtccctcccaag 332 | | || |||| ||||||||||||||| |||||||||||| |||||| | ||||| ||| Sbjct: 238 accgccatctgtgagatttgccttcagaatttcgagccagggtacacaatgcctccaaag 297 Query: 333 aaagccccggtggt 346 ||| | |||||||| Sbjct: 298 aaaactccggtggt 311 Score = 42.1 bits (21), Expect = 3.7 Identities = 45/53 (84%) Strand = Plus / Plus Query: 477 tggtgccggccattggcgataacgttcaccatcatcctgctggtgtggcatct 529 ||||||||| | ||||||| ||||||||||| || ||||||| |||||||| Sbjct: 430 tggtgccggtcgctggcgatcacgttcaccattatgctgctggcatggcatct 482
>gb|AY107994.1| Zea mays PCO117356 mRNA sequence Length = 947 Score = 123 bits (62), Expect = 1e-24 Identities = 116/134 (86%) Strand = Plus / Plus Query: 213 tccggctctctcaagtacgcgcacaggggatgcgtgcagaggtggtgcgacgagaagggg 272 |||||||||||||||||||| |||||| |||| |||||||| ||||| || ||||||||| Sbjct: 156 tccggctctctcaagtacgctcacaggcgatgtgtgcagagatggtgtgatgagaagggg 215 Query: 273 agcaccctctgcgagatttgccttcagggtttcgagccaggctacacagtccctcccaag 332 | | || |||| ||||||||||||||| |||||||||||| |||||| | ||||| ||| Sbjct: 216 accgccatctgtgagatttgccttcagaatttcgagccagggtacacaatgcctccaaag 275 Query: 333 aaagccccggtggt 346 ||| | |||||||| Sbjct: 276 aaaactccggtggt 289 Score = 42.1 bits (21), Expect = 3.7 Identities = 45/53 (84%) Strand = Plus / Plus Query: 477 tggtgccggccattggcgataacgttcaccatcatcctgctggtgtggcatct 529 ||||||||| | ||||||| ||||||||||| || ||||||| |||||||| Sbjct: 408 tggtgccggtcgctggcgatcacgttcaccattatgctgctggcatggcatct 460
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 109 bits (55), Expect = 2e-20 Identities = 70/75 (93%) Strand = Plus / Minus Query: 226 agtacgcgcacaggggatgcgtgcagaggtggtgcgacgagaaggggagcaccctctgcg 285 |||||||||||||||| || |||||||| |||||||| |||||||||||||| ||||||| Sbjct: 11232485 agtacgcgcacagggggtgtgtgcagagatggtgcgatgagaaggggagcacgctctgcg 11232426 Query: 286 agatttgccttcagg 300 ||||||||||||||| Sbjct: 11232425 agatttgccttcagg 11232411 Score = 54.0 bits (27), Expect = 0.001 Identities = 33/35 (94%) Strand = Plus / Minus Query: 141 atgatgcagtgcaggatctgccacgaggaggagga 175 |||| |||||||||||||||||| ||||||||||| Sbjct: 11232756 atgaggcagtgcaggatctgccatgaggaggagga 11232722 Score = 44.1 bits (22), Expect = 0.94 Identities = 28/30 (93%) Strand = Plus / Minus Query: 609 atcttgctgccgctctacgccgtcatgagg 638 |||||||||||| |||||| |||||||||| Sbjct: 11230445 atcttgctgccgttctacgtcgtcatgagg 11230416
>dbj|AP003206.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1146F03 Length = 137047 Score = 109 bits (55), Expect = 2e-20 Identities = 70/75 (93%) Strand = Plus / Minus Query: 226 agtacgcgcacaggggatgcgtgcagaggtggtgcgacgagaaggggagcaccctctgcg 285 |||||||||||||||| || |||||||| |||||||| |||||||||||||| ||||||| Sbjct: 124278 agtacgcgcacagggggtgtgtgcagagatggtgcgatgagaaggggagcacgctctgcg 124219 Query: 286 agatttgccttcagg 300 ||||||||||||||| Sbjct: 124218 agatttgccttcagg 124204 Score = 54.0 bits (27), Expect = 0.001 Identities = 33/35 (94%) Strand = Plus / Minus Query: 141 atgatgcagtgcaggatctgccacgaggaggagga 175 |||| |||||||||||||||||| ||||||||||| Sbjct: 124549 atgaggcagtgcaggatctgccatgaggaggagga 124515 Score = 44.1 bits (22), Expect = 0.94 Identities = 28/30 (93%) Strand = Plus / Minus Query: 609 atcttgctgccgctctacgccgtcatgagg 638 |||||||||||| |||||| |||||||||| Sbjct: 122238 atcttgctgccgttctacgtcgtcatgagg 122209
>dbj|AP002871.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0475H04 Length = 143337 Score = 109 bits (55), Expect = 2e-20 Identities = 70/75 (93%) Strand = Plus / Minus Query: 226 agtacgcgcacaggggatgcgtgcagaggtggtgcgacgagaaggggagcaccctctgcg 285 |||||||||||||||| || |||||||| |||||||| |||||||||||||| ||||||| Sbjct: 19890 agtacgcgcacagggggtgtgtgcagagatggtgcgatgagaaggggagcacgctctgcg 19831 Query: 286 agatttgccttcagg 300 ||||||||||||||| Sbjct: 19830 agatttgccttcagg 19816 Score = 54.0 bits (27), Expect = 0.001 Identities = 33/35 (94%) Strand = Plus / Minus Query: 141 atgatgcagtgcaggatctgccacgaggaggagga 175 |||| |||||||||||||||||| ||||||||||| Sbjct: 20161 atgaggcagtgcaggatctgccatgaggaggagga 20127 Score = 44.1 bits (22), Expect = 0.94 Identities = 28/30 (93%) Strand = Plus / Minus Query: 609 atcttgctgccgctctacgccgtcatgagg 638 |||||||||||| |||||| |||||||||| Sbjct: 17850 atcttgctgccgttctacgtcgtcatgagg 17821
>emb|AJ234684.1|HVU234684 Hordeum vulgare genomic DNA fragment; clone MWG0967.rev Length = 91 Score = 93.7 bits (47), Expect = 1e-15 Identities = 62/67 (92%) Strand = Plus / Plus Query: 234 cacaggggatgcgtgcagaggtggtgcgacgagaaggggagcaccctctgcgagatttgc 293 |||||||| ||||||||||| |||||||||||||||||||||||| |||| ||||||||| Sbjct: 7 cacagggggtgcgtgcagagatggtgcgacgagaaggggagcaccgtctgtgagatttgc 66 Query: 294 cttcagg 300 || |||| Sbjct: 67 ctccagg 73
>gb|AC121363.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0036C12, complete sequence Length = 145517 Score = 85.7 bits (43), Expect = 3e-13 Identities = 61/67 (91%) Strand = Plus / Minus Query: 234 cacaggggatgcgtgcagaggtggtgcgacgagaaggggagcaccctctgcgagatttgc 293 ||||||||||| |||||||||||||| || |||||||||||||| ||||| ||||||||| Sbjct: 41703 cacaggggatgtgtgcagaggtggtgtgatgagaaggggagcacactctgtgagatttgc 41644 Query: 294 cttcagg 300 || |||| Sbjct: 41643 ctccagg 41637 Score = 67.9 bits (34), Expect = 6e-08 Identities = 67/78 (85%) Strand = Plus / Minus Query: 500 gttcaccatcatcctgctggtgtggcatctcatcgccgtggtgaccatcgaggccgcgga 559 ||||||||| || |||||||||||||||||||| || |||||||| || || || ||||| Sbjct: 39982 gttcaccattatgctgctggtgtggcatctcattgcagtggtgacaattgaagcggcgga 39923 Query: 560 gcactgcgcgttcagcct 577 ||||| || |||||||| Sbjct: 39922 tcactgtgcattcagcct 39905 Score = 60.0 bits (30), Expect = 2e-05 Identities = 69/82 (84%) Strand = Plus / Minus Query: 146 gcagtgcaggatctgccacgaggaggaggacgagagctccgcggcaatggagtctccctg 205 |||||||||||| ||||| ||||||||||| ||| | | ||| ||||| ||||| ||||| Sbjct: 41962 gcagtgcaggatttgccatgaggaggaggatgagtggtgcgctgcaattgagtccccctg 41903 Query: 206 cgcgtgctccggctctctcaag 227 | ||||| |||||||||||| Sbjct: 41902 tggatgctctggctctctcaag 41881
>gb|AC104281.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1537_B05, complete sequence Length = 129890 Score = 85.7 bits (43), Expect = 3e-13 Identities = 61/67 (91%) Strand = Plus / Minus Query: 234 cacaggggatgcgtgcagaggtggtgcgacgagaaggggagcaccctctgcgagatttgc 293 ||||||||||| |||||||||||||| || |||||||||||||| ||||| ||||||||| Sbjct: 127209 cacaggggatgtgtgcagaggtggtgtgatgagaaggggagcacactctgtgagatttgc 127150 Query: 294 cttcagg 300 || |||| Sbjct: 127149 ctccagg 127143 Score = 67.9 bits (34), Expect = 6e-08 Identities = 67/78 (85%) Strand = Plus / Minus Query: 500 gttcaccatcatcctgctggtgtggcatctcatcgccgtggtgaccatcgaggccgcgga 559 ||||||||| || |||||||||||||||||||| || |||||||| || || || ||||| Sbjct: 125488 gttcaccattatgctgctggtgtggcatctcattgcagtggtgacaattgaagcggcgga 125429 Query: 560 gcactgcgcgttcagcct 577 ||||| || |||||||| Sbjct: 125428 tcactgtgcattcagcct 125411 Score = 60.0 bits (30), Expect = 2e-05 Identities = 69/82 (84%) Strand = Plus / Minus Query: 146 gcagtgcaggatctgccacgaggaggaggacgagagctccgcggcaatggagtctccctg 205 |||||||||||| ||||| ||||||||||| ||| | | ||| ||||| ||||| ||||| Sbjct: 127468 gcagtgcaggatttgccatgaggaggaggatgagtggtgcgctgcaattgagtccccctg 127409 Query: 206 cgcgtgctccggctctctcaag 227 | ||||| |||||||||||| Sbjct: 127408 tggatgctctggctctctcaag 127387
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5 Length = 29737217 Score = 85.7 bits (43), Expect = 3e-13 Identities = 61/67 (91%) Strand = Plus / Minus Query: 234 cacaggggatgcgtgcagaggtggtgcgacgagaaggggagcaccctctgcgagatttgc 293 ||||||||||| |||||||||||||| || |||||||||||||| ||||| ||||||||| Sbjct: 16717593 cacaggggatgtgtgcagaggtggtgtgatgagaaggggagcacactctgtgagatttgc 16717534 Query: 294 cttcagg 300 || |||| Sbjct: 16717533 ctccagg 16717527 Score = 67.9 bits (34), Expect = 6e-08 Identities = 67/78 (85%) Strand = Plus / Minus Query: 500 gttcaccatcatcctgctggtgtggcatctcatcgccgtggtgaccatcgaggccgcgga 559 ||||||||| || |||||||||||||||||||| || |||||||| || || || ||||| Sbjct: 16715872 gttcaccattatgctgctggtgtggcatctcattgcagtggtgacaattgaagcggcgga 16715813 Query: 560 gcactgcgcgttcagcct 577 ||||| || |||||||| Sbjct: 16715812 tcactgtgcattcagcct 16715795 Score = 60.0 bits (30), Expect = 2e-05 Identities = 69/82 (84%) Strand = Plus / Minus Query: 146 gcagtgcaggatctgccacgaggaggaggacgagagctccgcggcaatggagtctccctg 205 |||||||||||| ||||| ||||||||||| ||| | | ||| ||||| ||||| ||||| Sbjct: 16717852 gcagtgcaggatttgccatgaggaggaggatgagtggtgcgctgcaattgagtccccctg 16717793 Query: 206 cgcgtgctccggctctctcaag 227 | ||||| |||||||||||| Sbjct: 16717792 tggatgctctggctctctcaag 16717771 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 855 gaaaattacacttgctgcagt 875 ||||||||||||||||||||| Sbjct: 23757552 gaaaattacacttgctgcagt 23757572
>emb|AL731853.9| Mouse DNA sequence from clone RP23-128G5 on chromosome 11 Contains the 5' end of the Osbp2 gene for oxysterol binding protein 2, a novel pseudogene, two novel genes, the Dusp18 gene for dual specificity phosphatase 18 and five CpG islands, complete sequence Length = 205509 Score = 46.1 bits (23), Expect = 0.24 Identities = 23/23 (100%) Strand = Plus / Minus Query: 933 taagagtgattatttatttattt 955 ||||||||||||||||||||||| Sbjct: 166462 taagagtgattatttatttattt 166440
>gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome Length = 3665893 Score = 44.1 bits (22), Expect = 0.94 Identities = 22/22 (100%) Strand = Plus / Minus Query: 674 ccagttgcaacagctgctggag 695 |||||||||||||||||||||| Sbjct: 364229 ccagttgcaacagctgctggag 364208
>gb|AC163683.4| Mus musculus BAC clone RP23-8L20 from chromosome 6, complete sequence Length = 218138 Score = 44.1 bits (22), Expect = 0.94 Identities = 22/22 (100%) Strand = Plus / Plus Query: 935 agagtgattatttatttatttt 956 |||||||||||||||||||||| Sbjct: 129486 agagtgattatttatttatttt 129507
>ref|XM_588485.2| PREDICTED: Bos taurus similar to zinc finger protein 366 (LOC539632), mRNA Length = 2229 Score = 44.1 bits (22), Expect = 0.94 Identities = 22/22 (100%) Strand = Plus / Plus Query: 158 ctgccacgaggaggaggacgag 179 |||||||||||||||||||||| Sbjct: 1851 ctgccacgaggaggaggacgag 1872
>gb|AC163747.4| Mus musculus BAC clone RP23-403P6 from chromosome 6, complete sequence Length = 185160 Score = 44.1 bits (22), Expect = 0.94 Identities = 22/22 (100%) Strand = Plus / Plus Query: 935 agagtgattatttatttatttt 956 |||||||||||||||||||||| Sbjct: 36457 agagtgattatttatttatttt 36478
>gb|AC073359.12| Homo sapiens 3 BAC RP11-439C8 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 178336 Score = 44.1 bits (22), Expect = 0.94 Identities = 25/26 (96%) Strand = Plus / Minus Query: 931 aataagagtgattatttatttatttt 956 ||||||| |||||||||||||||||| Sbjct: 148631 aataagaatgattatttatttatttt 148606
>gb|AC157375.2| Medicago truncatula chromosome 2 BAC clone mth2-55b12, complete sequence Length = 125311 Score = 44.1 bits (22), Expect = 0.94 Identities = 22/22 (100%) Strand = Plus / Minus Query: 817 aaattattcacataaataaata 838 |||||||||||||||||||||| Sbjct: 75188 aaattattcacataaataaata 75167
>gb|AC191600.2| Medicago truncatula chromosome 2 BAC clone mth4-39h3, complete sequence Length = 70997 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 826 acataaataaatatttatata 846 ||||||||||||||||||||| Sbjct: 30903 acataaataaatatttatata 30923
>emb|CR759896.12| Zebrafish DNA sequence from clone DKEY-192J17 in linkage group 24, complete sequence Length = 140575 Score = 42.1 bits (21), Expect = 3.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 814 tgtaaattattcacataaataaatattta 842 ||||||||||| | ||||||||||||||| Sbjct: 18927 tgtaaattatttaaataaataaatattta 18955
>gb|AE013599.4| Drosophila melanogaster chromosome 2R, complete sequence Length = 21146708 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 941 attatttatttattttgtaat 961 ||||||||||||||||||||| Sbjct: 15339854 attatttatttattttgtaat 15339834
>gb|CP000246.1| Clostridium perfringens ATCC 13124, complete genome Length = 3256683 Score = 42.1 bits (21), Expect = 3.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 829 taaataaatatttatatagtaaagt 853 ||||||||||||||| ||||||||| Sbjct: 585505 taaataaatatttatttagtaaagt 585529
>emb|CR384055.4| Zebrafish DNA sequence from clone CH211-236C15 in linkage group 25, complete sequence Length = 90680 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 941 attatttatttattttgtaat 961 ||||||||||||||||||||| Sbjct: 34707 attatttatttattttgtaat 34727
>emb|CR392353.6| Zebrafish DNA sequence from clone CH211-9D19 in linkage group 11, complete sequence Length = 183599 Score = 42.1 bits (21), Expect = 3.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 813 ctgtaaattattcacataaataaat 837 |||||||||||||| |||||||||| Sbjct: 71388 ctgtaaattattcaaataaataaat 71412
>gb|AC115691.8| Mus musculus chromosome 18, clone RP24-286B14, complete sequence Length = 175016 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 28 gcagccagcaaagggtagcca 48 ||||||||||||||||||||| Sbjct: 142420 gcagccagcaaagggtagcca 142440
>gb|AC150162.1| Solanum demissum chromosome 5 clone PGEC160O2, complete sequence Length = 125813 Score = 42.1 bits (21), Expect = 3.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 148 agtgcaggatctgccacgaggagga 172 |||||||||||||||| |||||||| Sbjct: 66909 agtgcaggatctgccaggaggagga 66933
>gb|AC093952.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1004_E02, complete sequence Length = 127642 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 855 gaaaattacacttgctgcagt 875 ||||||||||||||||||||| Sbjct: 38373 gaaaattacacttgctgcagt 38393
>gb|AC101796.8| Mus musculus chromosome 1, clone RP24-206P18, complete sequence Length = 171181 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 825 cacataaataaatatttatat 845 ||||||||||||||||||||| Sbjct: 146934 cacataaataaatatttatat 146914
>gb|AC125157.4| Mus musculus BAC clone RP24-390G17 from chromosome 18, complete sequence Length = 207265 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 28 gcagccagcaaagggtagcca 48 ||||||||||||||||||||| Sbjct: 195288 gcagccagcaaagggtagcca 195308
>gb|AC104373.4| Homo sapiens chromosome 8, clone RP11-1144P22, complete sequence Length = 89086 Score = 42.1 bits (21), Expect = 3.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 818 aattattcacataaataaatatttatata 846 ||||||||| ||||||| ||||||||||| Sbjct: 74521 aattattcatataaatatatatttatata 74549
>gb|AE014302.1| Homo sapiens chromosome 13q34 schizophrenia region contig 2 section 2 of 3 of the complete sequence Length = 277196 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 829 taaataaatatttatatagta 849 ||||||||||||||||||||| Sbjct: 71322 taaataaatatttatatagta 71342
>gb|AC104012.11| Homo sapiens chromosome 8, clone RP11-281N10, complete sequence Length = 170668 Score = 42.1 bits (21), Expect = 3.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 818 aattattcacataaataaatatttatata 846 ||||||||| ||||||| ||||||||||| Sbjct: 19031 aattattcatataaatatatatttatata 19059
>gb|AC021070.24| Homo sapiens 12 BAC RP11-460N10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 162978 Score = 42.1 bits (21), Expect = 3.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 822 attcacataaataaatatttatata 846 ||||||||| ||||||||||||||| Sbjct: 147024 attcacatatataaatatttatata 147048
>ref|NG_001723.1| Mus musculus olfactory receptor GA_x5J8B7W3UM0-970645-971221 (GA_x5J8B7W3UM0-970645-971221) pseudogene on chromosome 11 gb|AF500659.1| Mus musculus olfactory receptor GA_x5J8B7W3UM0-970645-971221 pseudogene, complete sequence Length = 577 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 725 ccaggaggagcagcaacagct 745 ||||||||||||||||||||| Sbjct: 264 ccaggaggagcagcaacagct 244
>emb|CR513783.5| Zebrafish DNA sequence from clone DKEY-246P3 in linkage group 25, complete sequence Length = 170681 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 941 attatttatttattttgtaat 961 ||||||||||||||||||||| Sbjct: 75083 attatttatttattttgtaat 75063
>emb|BX927144.24| Zebrafish DNA sequence from clone CH211-216K22 in linkage group 8, complete sequence Length = 168503 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 941 attatttatttattttgtaat 961 ||||||||||||||||||||| Sbjct: 38855 attatttatttattttgtaat 38875
>gb|AC099013.1| Drosophila melanogaster, chromosome 2R, region 56D-56E, BAC clone BACR25K02, complete sequence Length = 173347 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 941 attatttatttattttgtaat 961 ||||||||||||||||||||| Sbjct: 77473 attatttatttattttgtaat 77453
>emb|Z99707.1|ATAP21 Arabidopsis thaliana DNA chromosome 4, ESSA I AP2 contig fragment No. 1 Length = 206420 Score = 42.1 bits (21), Expect = 3.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 913 aatcaaggctcaaattcaaataaga 937 |||||| |||||||||||||||||| Sbjct: 140086 aatcaatgctcaaattcaaataaga 140110
>emb|X79060.2|NSDHDPSR1 Nicotiana sylvestris dhdps-r1 gene for dihydrodipicolinate synthase Length = 1773 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 913 aatcaaggctcaaattcaaat 933 ||||||||||||||||||||| Sbjct: 1261 aatcaaggctcaaattcaaat 1281
>emb|CR848661.5| Zebrafish DNA sequence from clone CH211-187B9 in linkage group 15, complete sequence Length = 149649 Score = 42.1 bits (21), Expect = 3.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 813 ctgtaaattattcacataaataaat 837 |||||||||||||| |||||||||| Sbjct: 137153 ctgtaaattattcaaataaataaat 137129
>emb|AL161590.2|ATCHRIV86 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 86 Length = 198780 Score = 42.1 bits (21), Expect = 3.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 913 aatcaaggctcaaattcaaataaga 937 |||||| |||||||||||||||||| Sbjct: 115148 aatcaatgctcaaattcaaataaga 115124
>emb|AL161515.2|ATCHRIV27 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 27 Length = 197394 Score = 42.1 bits (21), Expect = 3.7 Identities = 33/37 (89%) Strand = Plus / Plus Query: 815 gtaaattattcacataaataaatatttatatagtaaa 851 ||||||||||| | |||||| ||||||||||| |||| Sbjct: 158250 gtaaattattctcttaaatagatatttatataataaa 158286
>emb|AL049482.1|ATF17A8 Arabidopsis thaliana DNA chromosome 4, BAC clone F17A8 (ESSA project) Length = 128071 Score = 42.1 bits (21), Expect = 3.7 Identities = 33/37 (89%) Strand = Plus / Plus Query: 815 gtaaattattcacataaataaatatttatatagtaaa 851 ||||||||||| | |||||| ||||||||||| |||| Sbjct: 38949 gtaaattattctcttaaatagatatttatataataaa 38985
>emb|BX000436.5| Mouse DNA sequence from clone RP23-182F17 on chromosome 11, complete sequence Length = 64667 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 826 acataaataaatatttatata 846 ||||||||||||||||||||| Sbjct: 57043 acataaataaatatttatata 57023
>emb|AL592522.12| Mouse DNA sequence from clone RP23-210M6 on chromosome 11 Contains the genes for two novel 7 transmembrane receptor (rhodopsin family) domain-containing proteins, a high mobility group box 1 (Hmgb1) pseudogene, the Cias1 gene for cold autoinflammatory syndrome 1 homolog (human), a novel gene (4933439C10Rik), the gene for a novel protein (D130067D09), a ribosomal protein L18 (Rpl18) pseudogene, an ariadne homolog 2 (Drosophila) (Arih2) pseudogene, the gene for a novel zinc finger domain-containing protein, the 3' end of the gene for a novel protein and one CpG island, complete sequence Length = 157300 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 725 ccaggaggagcagcaacagct 745 ||||||||||||||||||||| Sbjct: 6794 ccaggaggagcagcaacagct 6774
>gb|AC097717.3| Homo sapiens BAC clone RP11-650N19 from 2, complete sequence Length = 142978 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 700 aaagaaggaatgcatccaggc 720 ||||||||||||||||||||| Sbjct: 67449 aaagaaggaatgcatccaggc 67429
>emb|BX649301.3| Zebrafish DNA sequence from clone DKEY-208D13 in linkage group 10, complete sequence Length = 149467 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 936 gagtgattatttatttatttt 956 ||||||||||||||||||||| Sbjct: 135054 gagtgattatttatttatttt 135034
>emb|BX530098.6| Zebrafish DNA sequence from clone RP71-1G9, complete sequence Length = 156637 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 941 attatttatttattttgtaat 961 ||||||||||||||||||||| Sbjct: 30274 attatttatttattttgtaat 30254
>emb|BX324119.5| Zebrafish DNA sequence from clone DKEYP-114G10 in linkage group 7, complete sequence Length = 60037 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 936 gagtgattatttatttatttt 956 ||||||||||||||||||||| Sbjct: 6440 gagtgattatttatttatttt 6420
>dbj|AK219837.1| Mus musculus cDNA, clone:Y2G0149M20, strand:unspecified Length = 572 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1 gggaaaggggggaggaaaggc 21 ||||||||||||||||||||| Sbjct: 481 gggaaaggggggaggaaaggc 461
>gb|AC010896.15| Homo sapiens BAC clone RP11-499P9 from 2, complete sequence Length = 188780 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 941 attatttatttattttgtaat 961 ||||||||||||||||||||| Sbjct: 39948 attatttatttattttgtaat 39928
>gb|AC079193.10| Homo sapiens chromosome 8, clone RP11-468H14, complete sequence Length = 169041 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 816 taaattattcacataaataaa 836 ||||||||||||||||||||| Sbjct: 47979 taaattattcacataaataaa 47959
>gb|AC136305.6| Homo sapiens chromosome 8, clone RP11-104K22, complete sequence Length = 156524 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 816 taaattattcacataaataaa 836 ||||||||||||||||||||| Sbjct: 44819 taaattattcacataaataaa 44839
>emb|BX936338.11| Mouse DNA sequence from clone RP23-402O17 on chromosome 4, complete sequence Length = 66155 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 821 tattcacataaataaatattt 841 ||||||||||||||||||||| Sbjct: 12425 tattcacataaataaatattt 12405
>dbj|AK105683.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-B07, full insert sequence Length = 2509 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 855 gaaaattacacttgctgcagt 875 ||||||||||||||||||||| Sbjct: 623 gaaaattacacttgctgcagt 603
>gb|CP000033.1| Lactobacillus acidophilus NCFM, complete genome Length = 1993564 Score = 42.1 bits (21), Expect = 3.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 923 caaattcaaataagagtgattattt 947 |||||| |||||||||||||||||| Sbjct: 102385 caaattgaaataagagtgattattt 102361
>emb|BX648265.1|HSM808413 Homo sapiens mRNA; cDNA DKFZp686M13115 (from clone DKFZp686M13115) Length = 6542 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 700 aaagaaggaatgcatccaggc 720 ||||||||||||||||||||| Sbjct: 1846 aaagaaggaatgcatccaggc 1866
>dbj|AP001024.6| Homo sapiens genomic DNA, chromosome 11 clone:RP11-832N8, complete sequence Length = 183444 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 937 agtgattatttatttattttg 957 ||||||||||||||||||||| Sbjct: 153423 agtgattatttatttattttg 153443
>dbj|AP006207.1| Homo sapiens genomic DNA, chromosome 8, clone:RP11-702B3, complete sequence Length = 170015 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 816 taaattattcacataaataaa 836 ||||||||||||||||||||| Sbjct: 17303 taaattattcacataaataaa 17283
>emb|BX927343.16| Zebrafish DNA sequence from clone CH211-57L21 in linkage group 16, complete sequence Length = 166820 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 831 aataaatatttatatagtaaa 851 ||||||||||||||||||||| Sbjct: 138530 aataaatatttatatagtaaa 138510
>gb|AC153562.2| Mus musculus 10 BAC RP23-143D12 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 212486 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 935 agagtgattatttatttattt 955 ||||||||||||||||||||| Sbjct: 63635 agagtgattatttatttattt 63615
>gb|AC004299.1|AC004299 Drosophila melanogaster DNA sequence (P1 DS07982 (D185)), complete sequence Length = 87585 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 941 attatttatttattttgtaat 961 ||||||||||||||||||||| Sbjct: 68088 attatttatttattttgtaat 68068
>gb|AC148011.3| Mus musculus BAC clone RP23-202I21 from 18, complete sequence Length = 220253 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 28 gcagccagcaaagggtagcca 48 ||||||||||||||||||||| Sbjct: 61883 gcagccagcaaagggtagcca 61903
>emb|AL844894.14| Zebrafish DNA sequence from clone DKEY-44K1, complete sequence Length = 220237 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 938 gtgattatttatttattttgt 958 ||||||||||||||||||||| Sbjct: 127065 gtgattatttatttattttgt 127085
>emb|AL731565.17| Mouse DNA sequence from clone RP23-83D8 on chromosome 4, complete sequence Length = 185273 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 821 tattcacataaataaatattt 841 ||||||||||||||||||||| Sbjct: 96863 tattcacataaataaatattt 96883
>dbj|AB020858.1| Homo sapiens genomic DNA of 8p21.3-p22 anti-oncogene of hepatocellular colorectal and non-small cell lung cancer , segment 1/11 Length = 100000 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 816 taaattattcacataaataaa 836 ||||||||||||||||||||| Sbjct: 78136 taaattattcacataaataaa 78116 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 161,464,029 Number of extensions: 12678242 Number of successful extensions: 1046846 Number of sequences better than 10.0: 67 Number of HSP's gapped: 1046846 Number of HSP's successfully gapped: 88 Length of query: 979 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 956 Effective length of database: 18,503,978,556 Effective search space: 17689803499536 Effective search space used: 17689803499536 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)