ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf9l05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q8BH65:F116A_MOUSE Protein FAM116A - Mus musculus (Mouse) 34 2.6
2Q6PIJ4:NFRKB_MOUSE Nuclear factor related to kappa-B-binding pro... 33 5.8

>Q8BH65:F116A_MOUSE Protein FAM116A - Mus musculus (Mouse)|
          Length = 605
 Score = 33.9 bits (76), Expect = 2.6
 Identities = 20/43 (46%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +1

Query: 661 LNGPKLFGSGKRTSLD--GGSGRRAARSVLTLVMLEDDMPREG 783
           L GP +FG G R SLD  G  GR AA      V LED+   +G
Sbjct: 3   LPGPAVFGPGSRGSLDEAGAEGREAAALAAAGVALEDEEEDDG 45



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>Q6PIJ4:NFRKB_MOUSE Nuclear factor related to kappa-B-binding protein - Mus musculus|
           (Mouse)
          Length = 1296

 Score = 32.7 bits (73), Expect = 5.8
 Identities = 24/87 (27%), Positives = 33/87 (37%)
 Frame = +1

Query: 169 FRVGLRSSWTTRLVDSGRSKLVDLLKTLRISKVLESRTSLTNQLEGSSQFFAEDLGLILE 348
           F V   S+W   L DS R  L   L       V + R  +     G +  F   L +  +
Sbjct: 50  FDVVSLSTWQEVLSDSQREHLQQFLPRFPADSVEQQRELILALFSGENFRFGNPLHIAQK 109

Query: 349 TLTVSCMIPDVQVYRTACYTSQFCRLL 429
                   P+V  YR  C+ SQ+ R L
Sbjct: 110 LFRDGHFNPEVVKYRQLCFKSQYKRYL 136


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 348,595,703
Number of extensions: 7738642
Number of successful extensions: 18838
Number of sequences better than 10.0: 2
Number of HSP's gapped: 18832
Number of HSP's successfully gapped: 2
Length of query: 668
Length of database: 100,686,439
Length adjustment: 120
Effective length of query: 548
Effective length of database: 67,771,039
Effective search space: 37138529372
Effective search space used: 37138529372
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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