ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf9h20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_001056419.1| Oryza sativa (japonica cultivar-group) Os03g... 464 e-127
2dbj|AK063714.1| Oryza sativa (japonica cultivar-group) cDNA clon... 464 e-127
3gb|DQ245560.1| Zea mays clone 17480 mRNA sequence 238 3e-59
4gb|AC135908.1| Genomic sequence for Oryza sativa, Nipponbare str... 206 1e-49
5gb|AY972619.1| Hordeum vulgare subsp. vulgare cultivar Morex sub... 206 1e-49
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 206 1e-49
7gb|AY057933.1| Bromus inermis stress-inducible membrane pore pro... 82 5e-12
8gb|U43718.1|TAU43718 Triticum aestivum pMA1951 mRNA, partial cds 74 1e-09
9dbj|AK242170.1| Oryza sativa (japonica cultivar-group) cDNA, clo... 72 5e-09
10ref|NM_001049368.1| Oryza sativa (japonica cultivar-group) Os01g... 72 5e-09
11dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 72 5e-09
12dbj|AP003206.4| Oryza sativa (japonica cultivar-group) genomic D... 72 5e-09
13dbj|AP002871.2| Oryza sativa (japonica cultivar-group) genomic D... 72 5e-09
14gb|AY695110.1| Xerophyta humilis dehydration up-regulated putati... 72 5e-09
15gb|BT017732.1| Zea mays clone EL01N0448C02.c mRNA sequence 70 2e-08
16gb|AY111174.1| Zea mays CL27726_1 mRNA sequence 70 2e-08
17gb|DQ245984.1| Zea mays clone 93911 mRNA sequence 64 1e-06
18emb|BX640416.1| Bordetella pertussis strain Tohama I, complete g... 50 0.017
19gb|CP000458.1| Burkholderia cenocepacia HI2424 chromosome 1, com... 48 0.066
20gb|CP000378.1| Burkholderia cenocepacia AU 1054 chromosome 1, co... 48 0.066
21ref|NM_001062199.1| Oryza sativa (japonica cultivar-group) Os05g... 46 0.26
22gb|CP000113.1| Myxococcus xanthus DK 1622, complete genome 46 0.26
23gb|AC134930.2| Oryza sativa (japonica cultivar-group) chromosome... 46 0.26
24dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.26
25dbj|AK069208.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.26
26gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 44 1.0
27emb|BX572602.1| Rhodopseudomonas palustris CGA009 complete genom... 44 1.0
28gb|CP000482.1| Pelobacter propionicus DSM 2379, complete genome 42 4.1
29emb|CT573213.2| Frankia alni str. ACN14A chromosome, complete se... 42 4.1
30gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 42 4.1
31gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence 42 4.1
32gb|AC150858.4| Bos taurus BAC CH240-431L22 (Children's Hospital... 42 4.1
33gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete ... 42 4.1
34gb|AY423269.1| Streptomyces diastaticus 108 cytochrome P450 mono... 42 4.1
35gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, comple... 42 4.1
36gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 42 4.1
37dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 42 4.1

>ref|NM_001056419.1| Oryza sativa (japonica cultivar-group) Os03g0305600 (Os03g0305600)
           mRNA, complete cds
          Length = 839
 Score =  464 bits (234), Expect = e-127
 Identities = 443/512 (86%), Gaps = 3/512 (0%)
 Strand = Plus / Plus

                                                                       
Query: 98  agcagccacgaggcgcgcaagttcgtggaggaggtgcgcggcctggagaagaactggatg 157
           |||||||  ||| |||||| |||| |||| ||||||||||||||||||||||||||||||
Sbjct: 117 agcagcctggagacgcgcacgttcctggacgaggtgcgcggcctggagaagaactggatg 176

                                                                       
Query: 158 ctcgaactcggccacccgctcctcaaccgcgtcgccgacagcttcgtcaaggccgccggg 217
            |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| 
Sbjct: 177 gtcgacctcggccacccgctcctcaaccgcgtcgccgagagcttcgtcaaggccgccggc 236

                                                                       
Query: 218 atcggcgcgatgcaggccgtcgcgcgggactcctactttatggccatcgaaggcgaatct 277
           ||||||||  | ||||| ||||||||||| || ||||| |||||||| ||||| ||   |
Sbjct: 237 atcggcgcagtccaggcggtcgcgcgggagtcttacttcatggccatggaaggggagggt 296

                                                                       
Query: 278 gggggcaccggagcggtgtctgacgcgaccggcagcaggaaacggacgttcccggacctc 337
           |||||||| ||||| ||||| ||| | ||||||  |||||| ||  |||||||||| |||
Sbjct: 297 gggggcacgggagccgtgtccgactccaccggcgccaggaagcgatcgttcccggatctc 356

                                                                       
Query: 338 aatggagggacgagcaacagcaagtcagcggaggacatggtgaaaagcgtgagcaaggag 397
           || |||||||  ||||   |||||||||| ||||  |||||||||||||||||||| |||
Sbjct: 357 aacggagggaacagca---gcaagtcagctgaggctatggtgaaaagcgtgagcaaagag 413

                                                                       
Query: 398 tcgttccagtgggggctcgcggcagggatgcactccggcctcacctacggactgacggag 457
           ||  ||||||||||||||||||| ||| ||||||| || || |||||||| |||||||||
Sbjct: 414 tctctccagtgggggctcgcggccgggttgcactcggggctgacctacggcctgacggag 473

                                                                       
Query: 458 gtgcgcggggcccacgactggaagaacagcgcgctggcgggcgccgtcaccggcgcggcg 517
           | ||||||| | ||||||||||||||||||| | ||||||||||| ||||||||||||| 
Sbjct: 474 gcgcgcgggacgcacgactggaagaacagcgtggtggcgggcgccctcaccggcgcggcc 533

                                                                       
Query: 518 gtcgcgctgacctcggacaactcatcgcatgagcggattgtgcagtgcgccatcaccggc 577
           |||||||| |||||||||  | | ||||| |||||| | ||||||||||||||| |||||
Sbjct: 534 gtcgcgctcacctcggaccgcgcgtcgcacgagcgggtggtgcagtgcgccatcgccggc 593

                                           
Query: 578 gccgcgctgtccgccgccgccaacgtgctctc 609
           |||||||||||| | |||||||||||||||||
Sbjct: 594 gccgcgctgtccacggccgccaacgtgctctc 625



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>dbj|AK063714.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-120-C03, full
           insert sequence
          Length = 839

 Score =  464 bits (234), Expect = e-127
 Identities = 443/512 (86%), Gaps = 3/512 (0%)
 Strand = Plus / Plus

                                                                       
Query: 98  agcagccacgaggcgcgcaagttcgtggaggaggtgcgcggcctggagaagaactggatg 157
           |||||||  ||| |||||| |||| |||| ||||||||||||||||||||||||||||||
Sbjct: 117 agcagcctggagacgcgcacgttcctggacgaggtgcgcggcctggagaagaactggatg 176

                                                                       
Query: 158 ctcgaactcggccacccgctcctcaaccgcgtcgccgacagcttcgtcaaggccgccggg 217
            |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| 
Sbjct: 177 gtcgacctcggccacccgctcctcaaccgcgtcgccgagagcttcgtcaaggccgccggc 236

                                                                       
Query: 218 atcggcgcgatgcaggccgtcgcgcgggactcctactttatggccatcgaaggcgaatct 277
           ||||||||  | ||||| ||||||||||| || ||||| |||||||| ||||| ||   |
Sbjct: 237 atcggcgcagtccaggcggtcgcgcgggagtcttacttcatggccatggaaggggagggt 296

                                                                       
Query: 278 gggggcaccggagcggtgtctgacgcgaccggcagcaggaaacggacgttcccggacctc 337
           |||||||| ||||| ||||| ||| | ||||||  |||||| ||  |||||||||| |||
Sbjct: 297 gggggcacgggagccgtgtccgactccaccggcgccaggaagcgatcgttcccggatctc 356

                                                                       
Query: 338 aatggagggacgagcaacagcaagtcagcggaggacatggtgaaaagcgtgagcaaggag 397
           || |||||||  ||||   |||||||||| ||||  |||||||||||||||||||| |||
Sbjct: 357 aacggagggaacagca---gcaagtcagctgaggctatggtgaaaagcgtgagcaaagag 413

                                                                       
Query: 398 tcgttccagtgggggctcgcggcagggatgcactccggcctcacctacggactgacggag 457
           ||  ||||||||||||||||||| ||| ||||||| || || |||||||| |||||||||
Sbjct: 414 tctctccagtgggggctcgcggccgggttgcactcggggctgacctacggcctgacggag 473

                                                                       
Query: 458 gtgcgcggggcccacgactggaagaacagcgcgctggcgggcgccgtcaccggcgcggcg 517
           | ||||||| | ||||||||||||||||||| | ||||||||||| ||||||||||||| 
Sbjct: 474 gcgcgcgggacgcacgactggaagaacagcgtggtggcgggcgccctcaccggcgcggcc 533

                                                                       
Query: 518 gtcgcgctgacctcggacaactcatcgcatgagcggattgtgcagtgcgccatcaccggc 577
           |||||||| |||||||||  | | ||||| |||||| | ||||||||||||||| |||||
Sbjct: 534 gtcgcgctcacctcggaccgcgcgtcgcacgagcgggtggtgcagtgcgccatcgccggc 593

                                           
Query: 578 gccgcgctgtccgccgccgccaacgtgctctc 609
           |||||||||||| | |||||||||||||||||
Sbjct: 594 gccgcgctgtccacggccgccaacgtgctctc 625



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>gb|DQ245560.1| Zea mays clone 17480 mRNA sequence
          Length = 896

 Score =  238 bits (120), Expect = 3e-59
 Identities = 219/252 (86%)
 Strand = Plus / Plus

                                                                       
Query: 358 caagtcagcggaggacatggtgaaaagcgtgagcaaggagtcgttccagtgggggctcgc 417
           |||||| || |||| ||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 327 caagtcggcagaggccatggtgaaaagcgtgagcaaagagtcgttacagtgggggctcgc 386

                                                                       
Query: 418 ggcagggatgcactccggcctcacctacggactgacggaggtgcgcggggcccacgactg 477
           ||| ||| |||||||||||||||||||||| ||  ||| |||||||||| | ||||||||
Sbjct: 387 ggctggggtgcactccggcctcacctacggcctcgcgggggtgcgcgggacgcacgactg 446

                                                                       
Query: 478 gaagaacagcgcgctggcgggcgccgtcaccggcgcggcggtcgcgctgacctcggacaa 537
           || |||||||||  |||| |||||| |||| ||||| ||||||||||| || |||||  |
Sbjct: 447 gaggaacagcgccgtggctggcgccatcacgggcgccgcggtcgcgctcacgtcggagca 506

                                                                       
Query: 538 ctcatcgcatgagcggattgtgcagtgcgccatcaccggcgccgcgctgtccgccgccgc 597
           | | ||||| |||| | | ||||||||||||||||||||||||||||| ||| | |||||
Sbjct: 507 cgcgtcgcacgagcaggtcgtgcagtgcgccatcaccggcgccgcgctctccacggccgc 566

                       
Query: 598 caacgtgctctc 609
           ||||||||||||
Sbjct: 567 caacgtgctctc 578



 Score =  121 bits (61), Expect = 6e-24
 Identities = 103/117 (88%)
 Strand = Plus / Plus

                                                                       
Query: 145 gaagaactggatgctcgaactcggccacccgctcctcaaccgcgtcgccgacagcttcgt 204
           ||||||||||||||| || ||||||||||||||||| |||||||||||||| ||||||| 
Sbjct: 117 gaagaactggatgctggacctcggccacccgctcctgaaccgcgtcgccgagagcttcgc 176

                                                                    
Query: 205 caaggccgccgggatcggcgcgatgcaggccgtcgcgcgggactcctactttatggc 261
           ||||||||| |||||||||||  ||||||| |||||  |||| || ||||| |||||
Sbjct: 177 caaggccgcggggatcggcgcagtgcaggcggtcgccagggaatcgtacttcatggc 233



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>gb|AC135908.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1275B08,
             from chromosome 3, complete sequence
          Length = 108833

 Score =  206 bits (104), Expect = 1e-49
 Identities = 176/200 (88%)
 Strand = Plus / Minus

                                                                         
Query: 410   gggctcgcggcagggatgcactccggcctcacctacggactgacggaggtgcgcggggcc 469
             ||||||||||| ||| ||||||| || || |||||||| |||||||||| ||||||| | 
Sbjct: 33526 gggctcgcggccgggttgcactcggggctgacctacggcctgacggaggcgcgcgggacg 33467

                                                                         
Query: 470   cacgactggaagaacagcgcgctggcgggcgccgtcaccggcgcggcggtcgcgctgacc 529
             ||||||||||||||||||| | ||||||||||| ||||||||||||| |||||||| |||
Sbjct: 33466 cacgactggaagaacagcgtggtggcgggcgccctcaccggcgcggccgtcgcgctcacc 33407

                                                                         
Query: 530   tcggacaactcatcgcatgagcggattgtgcagtgcgccatcaccggcgccgcgctgtcc 589
             ||||||  | | ||||| |||||| | ||||||||||||||| |||||||||||||||||
Sbjct: 33406 tcggaccgcgcgtcgcacgagcgggtggtgcagtgcgccatcgccggcgccgcgctgtcc 33347

                                 
Query: 590   gccgccgccaacgtgctctc 609
              | |||||||||||||||||
Sbjct: 33346 acggccgccaacgtgctctc 33327



 Score =  165 bits (83), Expect = 4e-37
 Identities = 110/119 (92%)
 Strand = Plus / Minus

                                                                         
Query: 98    agcagccacgaggcgcgcaagttcgtggaggaggtgcgcggcctggagaagaactggatg 157
             |||||||  ||| |||||| |||| |||| ||||||||||||||||||||||||||||||
Sbjct: 34426 agcagcctggagacgcgcacgttcctggacgaggtgcgcggcctggagaagaactggatg 34367

                                                                        
Query: 158   ctcgaactcggccacccgctcctcaaccgcgtcgccgacagcttcgtcaaggccgccgg 216
              |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 34366 gtcgacctcggccacccgctcctcaaccgcgtcgccgagagcttcgtcaaggccgccgg 34308



 Score = 48.1 bits (24), Expect = 0.066
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                 
Query: 376   ggtgaaaagcgtgagcaaggagtcgttccagtgggg 411
             |||||||||||||||||| |||||  ||||||||||
Sbjct: 33662 ggtgaaaagcgtgagcaaagagtctctccagtgggg 33627



 Score = 46.1 bits (23), Expect = 0.26
 Identities = 47/55 (85%)
 Strand = Plus / Minus

                                                                    
Query: 217   gatcggcgcgatgcaggccgtcgcgcgggactcctactttatggccatcgaaggc 271
             |||||||||  | ||||| ||||||||||| || ||||| |||||||| ||||||
Sbjct: 34179 gatcggcgcagtccaggcggtcgcgcgggagtcttacttcatggccatggaaggc 34125



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>gb|AY972619.1| Hordeum vulgare subsp. vulgare cultivar Morex subclone NRG098 cyclic
            nucleotide-gated ion channel 4 (Nec1) gene, complete cds
          Length = 9090

 Score =  206 bits (104), Expect = 1e-49
 Identities = 223/261 (85%), Gaps = 3/261 (1%)
 Strand = Plus / Plus

                                                                        
Query: 622  ggcctcgtttggttaagggggattgggaaggttttgagagggaggaatttcacgggattg 681
            ||||||||||||||||||||||||||  ||||||||||||||||| |||| | |||||||
Sbjct: 3792 ggcctcgtttggttaagggggattggagaggttttgagagggagggattttaagggattg 3851

                                                                        
Query: 682  ggtgaatccnnnnnnnc-acccaatcctgtcaaatc-ccggggttttgcttccactcctc 739
            |||||||||       | |||||||||| ||||||| |||||| ||||||||||||  ||
Sbjct: 3852 ggtgaatccctttgttccacccaatcctctcaaatctccggggctttgcttccactagtc 3911

                                                                        
Query: 740  ctctgaggagggttttgaaacacatgaataggaatggattaaaggggaacggaggggatt 799
            ||| |||||||||||||||||||||  |||| || ||||| |||| ||||  ||||||||
Sbjct: 3912 ctccgaggagggttttgaaacacattgatagaaagggattgaaggagaacacaggggatt 3971

                                                                        
Query: 800  ggcctaagcaaaccaatcctaccaaatggacgcgcgaggatctgtggggtttctgggtc- 858
            || |||||||||||  ||||||||||||| ||  ||||||||||||||||||||||  | 
Sbjct: 3972 gggctaagcaaacctctcctaccaaatgggcgtccgaggatctgtggggtttctggccct 4031

                                 
Query: 859  ctcggggattttcctctcaaa 879
            | |||||||||| ||||||||
Sbjct: 4032 cccggggatttttctctcaaa 4052



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3
          Length = 36192742

 Score =  206 bits (104), Expect = 1e-49
 Identities = 176/200 (88%)
 Strand = Plus / Plus

                                                                            
Query: 410      gggctcgcggcagggatgcactccggcctcacctacggactgacggaggtgcgcggggcc 469
                ||||||||||| ||| ||||||| || || |||||||| |||||||||| ||||||| | 
Sbjct: 10819462 gggctcgcggccgggttgcactcggggctgacctacggcctgacggaggcgcgcgggacg 10819521

                                                                            
Query: 470      cacgactggaagaacagcgcgctggcgggcgccgtcaccggcgcggcggtcgcgctgacc 529
                ||||||||||||||||||| | ||||||||||| ||||||||||||| |||||||| |||
Sbjct: 10819522 cacgactggaagaacagcgtggtggcgggcgccctcaccggcgcggccgtcgcgctcacc 10819581

                                                                            
Query: 530      tcggacaactcatcgcatgagcggattgtgcagtgcgccatcaccggcgccgcgctgtcc 589
                ||||||  | | ||||| |||||| | ||||||||||||||| |||||||||||||||||
Sbjct: 10819582 tcggaccgcgcgtcgcacgagcgggtggtgcagtgcgccatcgccggcgccgcgctgtcc 10819641

                                    
Query: 590      gccgccgccaacgtgctctc 609
                 | |||||||||||||||||
Sbjct: 10819642 acggccgccaacgtgctctc 10819661



 Score =  165 bits (83), Expect = 4e-37
 Identities = 110/119 (92%)
 Strand = Plus / Plus

                                                                            
Query: 98       agcagccacgaggcgcgcaagttcgtggaggaggtgcgcggcctggagaagaactggatg 157
                |||||||  ||| |||||| |||| |||| ||||||||||||||||||||||||||||||
Sbjct: 10818562 agcagcctggagacgcgcacgttcctggacgaggtgcgcggcctggagaagaactggatg 10818621

                                                                           
Query: 158      ctcgaactcggccacccgctcctcaaccgcgtcgccgacagcttcgtcaaggccgccgg 216
                 |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 10818622 gtcgacctcggccacccgctcctcaaccgcgtcgccgagagcttcgtcaaggccgccgg 10818680



 Score = 48.1 bits (24), Expect = 0.066
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                    
Query: 376      ggtgaaaagcgtgagcaaggagtcgttccagtgggg 411
                |||||||||||||||||| |||||  ||||||||||
Sbjct: 10819326 ggtgaaaagcgtgagcaaagagtctctccagtgggg 10819361



 Score = 46.1 bits (23), Expect = 0.26
 Identities = 47/55 (85%)
 Strand = Plus / Plus

                                                                       
Query: 217      gatcggcgcgatgcaggccgtcgcgcgggactcctactttatggccatcgaaggc 271
                |||||||||  | ||||| ||||||||||| || ||||| |||||||| ||||||
Sbjct: 10818809 gatcggcgcagtccaggcggtcgcgcgggagtcttacttcatggccatggaaggc 10818863



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>gb|AY057933.1| Bromus inermis stress-inducible membrane pore protein (BG15) mRNA,
           complete cds
          Length = 819

 Score = 81.8 bits (41), Expect = 5e-12
 Identities = 44/45 (97%)
 Strand = Plus / Plus

                                                        
Query: 158 ctcgaactcggccacccgctcctcaaccgcgtcgccgacagcttc 202
           ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 140 ctcgacctcggccacccgctcctcaaccgcgtcgccgacagcttc 184



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>gb|U43718.1|TAU43718 Triticum aestivum pMA1951 mRNA, partial cds
          Length = 777

 Score = 73.8 bits (37), Expect = 1e-09
 Identities = 43/45 (95%)
 Strand = Plus / Minus

                                                        
Query: 158 ctcgaactcggccacccgctcctcaaccgcgtcgccgacagcttc 202
           ||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 655 ctcgacctcggccacccgctgctcaaccgcgtcgccgacagcttc 611



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>dbj|AK242170.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J075157P20,
           full insert sequence
          Length = 866

 Score = 71.9 bits (36), Expect = 5e-09
 Identities = 42/44 (95%)
 Strand = Plus / Plus

                                                       
Query: 159 tcgaactcggccacccgctcctcaaccgcgtcgccgacagcttc 202
           |||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 161 tcgacctcggccacccgctcgtcaaccgcgtcgccgacagcttc 204



 Score = 42.1 bits (21), Expect = 4.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 565 cgccatcaccggcgccgcgct 585
           |||||||||||||||||||||
Sbjct: 552 cgccatcaccggcgccgcgct 572



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>ref|NM_001049368.1| Oryza sativa (japonica cultivar-group) Os01g0303300 (Os01g0303300)
           mRNA, complete cds
          Length = 792

 Score = 71.9 bits (36), Expect = 5e-09
 Identities = 42/44 (95%)
 Strand = Plus / Plus

                                                       
Query: 159 tcgaactcggccacccgctcctcaaccgcgtcgccgacagcttc 202
           |||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 344 tcgacctcggccacccgctcgtcaaccgcgtcgccgacagcttc 387



 Score = 42.1 bits (21), Expect = 4.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 565 cgccatcaccggcgccgcgct 585
           |||||||||||||||||||||
Sbjct: 735 cgccatcaccggcgccgcgct 755



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1
          Length = 43261740

 Score = 71.9 bits (36), Expect = 5e-09
 Identities = 42/44 (95%)
 Strand = Plus / Minus

                                                            
Query: 159      tcgaactcggccacccgctcctcaaccgcgtcgccgacagcttc 202
                |||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 11221386 tcgacctcggccacccgctcgtcaaccgcgtcgccgacagcttc 11221343



 Score = 42.1 bits (21), Expect = 4.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 565      cgccatcaccggcgccgcgct 585
                |||||||||||||||||||||
Sbjct: 11220236 cgccatcaccggcgccgcgct 11220216



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>dbj|AP003206.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1146F03
          Length = 137047

 Score = 71.9 bits (36), Expect = 5e-09
 Identities = 42/44 (95%)
 Strand = Plus / Minus

                                                          
Query: 159    tcgaactcggccacccgctcctcaaccgcgtcgccgacagcttc 202
              |||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 113179 tcgacctcggccacccgctcgtcaaccgcgtcgccgacagcttc 113136



 Score = 42.1 bits (21), Expect = 4.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 565    cgccatcaccggcgccgcgct 585
              |||||||||||||||||||||
Sbjct: 112029 cgccatcaccggcgccgcgct 112009



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>dbj|AP002871.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0475H04
          Length = 143337

 Score = 71.9 bits (36), Expect = 5e-09
 Identities = 42/44 (95%)
 Strand = Plus / Minus

                                                        
Query: 159  tcgaactcggccacccgctcctcaaccgcgtcgccgacagcttc 202
            |||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 8791 tcgacctcggccacccgctcgtcaaccgcgtcgccgacagcttc 8748



 Score = 42.1 bits (21), Expect = 4.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 565  cgccatcaccggcgccgcgct 585
            |||||||||||||||||||||
Sbjct: 7641 cgccatcaccggcgccgcgct 7621



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>gb|AY695110.1| Xerophyta humilis dehydration up-regulated putative membrane pore
           protein mRNA, complete cds
          Length = 655

 Score = 71.9 bits (36), Expect = 5e-09
 Identities = 72/84 (85%)
 Strand = Plus / Plus

                                                                       
Query: 151 ctggatgctcgaactcggccacccgctcctcaaccgcgtcgccgacagcttcgtcaaggc 210
           ||||||| |||| ||||| |||||||| ||||| |||||| | || ||||||||||||||
Sbjct: 135 ctggatgttcgatctcggacacccgctgctcaatcgcgtcacggagagcttcgtcaaggc 194

                                   
Query: 211 cgccgggatcggcgcgatgcaggc 234
            |||||||| || ||||| |||||
Sbjct: 195 tgccgggattggggcgattcaggc 218



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>gb|BT017732.1| Zea mays clone EL01N0448C02.c mRNA sequence
          Length = 868

 Score = 69.9 bits (35), Expect = 2e-08
 Identities = 38/39 (97%)
 Strand = Plus / Plus

                                                  
Query: 164 ctcggccacccgctcctcaaccgcgtcgccgacagcttc 202
           |||||||||||||| ||||||||||||||||||||||||
Sbjct: 173 ctcggccacccgctgctcaaccgcgtcgccgacagcttc 211



 Score = 42.1 bits (21), Expect = 4.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 469 ccacgactggaagaacagcgc 489
           |||||||||||||||||||||
Sbjct: 472 ccacgactggaagaacagcgc 492



 Score = 42.1 bits (21), Expect = 4.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 565 cgccatcaccggcgccgcgct 585
           |||||||||||||||||||||
Sbjct: 571 cgccatcaccggcgccgcgct 591



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>gb|AY111174.1| Zea mays CL27726_1 mRNA sequence
          Length = 802

 Score = 69.9 bits (35), Expect = 2e-08
 Identities = 38/39 (97%)
 Strand = Plus / Minus

                                                  
Query: 164 ctcggccacccgctcctcaaccgcgtcgccgacagcttc 202
           |||||||||||||| ||||||||||||||||||||||||
Sbjct: 645 ctcggccacccgctgctcaaccgcgtcgccgacagcttc 607



 Score = 42.1 bits (21), Expect = 4.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 565 cgccatcaccggcgccgcgct 585
           |||||||||||||||||||||
Sbjct: 247 cgccatcaccggcgccgcgct 227



 Score = 42.1 bits (21), Expect = 4.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 469 ccacgactggaagaacagcgc 489
           |||||||||||||||||||||
Sbjct: 346 ccacgactggaagaacagcgc 326



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>gb|DQ245984.1| Zea mays clone 93911 mRNA sequence
          Length = 848

 Score = 63.9 bits (32), Expect = 1e-06
 Identities = 35/36 (97%)
 Strand = Plus / Plus

                                               
Query: 167 ggccacccgctcctcaaccgcgtcgccgacagcttc 202
           ||||||||||| ||||||||||||||||||||||||
Sbjct: 186 ggccacccgctgctcaaccgcgtcgccgacagcttc 221



 Score = 42.1 bits (21), Expect = 4.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 469 ccacgactggaagaacagcgc 489
           |||||||||||||||||||||
Sbjct: 482 ccacgactggaagaacagcgc 502



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>emb|BX640416.1| Bordetella pertussis strain Tohama I, complete genome; segment 6/12
          Length = 349354

 Score = 50.1 bits (25), Expect = 0.017
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                           
Query: 489    cgctggcgggcgccgtcaccggcgcggcg 517
              ||||||||||||||| |||||||||||||
Sbjct: 259157 cgctggcgggcgccggcaccggcgcggcg 259129



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>gb|CP000458.1| Burkholderia cenocepacia HI2424 chromosome 1, complete genome
          Length = 3483902

 Score = 48.1 bits (24), Expect = 0.066
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                               
Query: 493     ggcgggcgccgtcaccggcgcggcggtcgcgc 524
               |||||||||||| ||||||||| |||||||||
Sbjct: 2709902 ggcgggcgccgtgaccggcgcgtcggtcgcgc 2709871



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>gb|CP000378.1| Burkholderia cenocepacia AU 1054 chromosome 1, complete sequence
          Length = 3294563

 Score = 48.1 bits (24), Expect = 0.066
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                               
Query: 493     ggcgggcgccgtcaccggcgcggcggtcgcgc 524
               |||||||||||| ||||||||| |||||||||
Sbjct: 2025532 ggcgggcgccgtgaccggcgcgtcggtcgcgc 2025501



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>ref|NM_001062199.1| Oryza sativa (japonica cultivar-group) Os05g0439200 (Os05g0439200)
           mRNA, partial cds
          Length = 802

 Score = 46.1 bits (23), Expect = 0.26
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 576 gcgccgcgctgtccgccgccgcc 598
           |||||||||||||||||||||||
Sbjct: 248 gcgccgcgctgtccgccgccgcc 226



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>gb|CP000113.1| Myxococcus xanthus DK 1622, complete genome
          Length = 9139763

 Score = 46.1 bits (23), Expect = 0.26
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 571     caccggcgccgcgctgtccgccg 593
               |||||||||||||||||||||||
Sbjct: 1845653 caccggcgccgcgctgtccgccg 1845631



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>gb|AC134930.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0042J17, complete sequence
          Length = 124139

 Score = 46.1 bits (23), Expect = 0.26
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 576   gcgccgcgctgtccgccgccgcc 598
             |||||||||||||||||||||||
Sbjct: 87729 gcgccgcgctgtccgccgccgcc 87707



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5
          Length = 29737217

 Score = 46.1 bits (23), Expect = 0.26
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                       
Query: 576      gcgccgcgctgtccgccgccgcc 598
                |||||||||||||||||||||||
Sbjct: 21370407 gcgccgcgctgtccgccgccgcc 21370385



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>dbj|AK069208.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023009C22, full
           insert sequence
          Length = 803

 Score = 46.1 bits (23), Expect = 0.26
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 576 gcgccgcgctgtccgccgccgcc 598
           |||||||||||||||||||||||
Sbjct: 249 gcgccgcgctgtccgccgccgcc 227



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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 44.1 bits (22), Expect = 1.0
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 160     cgaactcggccacccgctcctc 181
               ||||||||||||||||||||||
Sbjct: 2671198 cgaactcggccacccgctcctc 2671219



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>emb|BX572602.1| Rhodopseudomonas palustris CGA009 complete genome; segment 10/16
          Length = 349981

 Score = 44.1 bits (22), Expect = 1.0
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 491    ctggcgggcgccgtcaccggcg 512
              ||||||||||||||||||||||
Sbjct: 163811 ctggcgggcgccgtcaccggcg 163832



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>gb|CP000482.1| Pelobacter propionicus DSM 2379, complete genome
          Length = 4008000

 Score = 42.1 bits (21), Expect = 4.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 203     gtcaaggccgccgggatcggc 223
               |||||||||||||||||||||
Sbjct: 1600916 gtcaaggccgccgggatcggc 1600936



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>emb|CT573213.2| Frankia alni str. ACN14A chromosome, complete sequence
          Length = 7497934

 Score = 42.1 bits (21), Expect = 4.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 574     cggcgccgcgctgtccgccgc 594
               |||||||||||||||||||||
Sbjct: 7346053 cggcgccgcgctgtccgccgc 7346073



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>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 42.1 bits (21), Expect = 4.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 181     caaccgcgtcgccgacagcttcgtc 205
               |||||||||| ||||||||||||||
Sbjct: 1540348 caaccgcgtcaccgacagcttcgtc 1540372



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>gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence
          Length = 1395069

 Score = 42.1 bits (21), Expect = 4.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 208     ggccgccgggatcggcgcgat 228
               |||||||||||||||||||||
Sbjct: 1323064 ggccgccgggatcggcgcgat 1323044



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>gb|AC150858.4| Bos taurus  BAC CH240-431L22 (Children's Hospital Oakland Research
              Institute Bovine BAC Library (male)) complete sequence
          Length = 166138

 Score = 42.1 bits (21), Expect = 4.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 840    tctgtggggtttctgggtcct 860
              |||||||||||||||||||||
Sbjct: 101358 tctgtggggtttctgggtcct 101378



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>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome
          Length = 2584158

 Score = 42.1 bits (21), Expect = 4.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 506     accggcgcggcggtcgcgctg 526
               |||||||||||||||||||||
Sbjct: 2094361 accggcgcggcggtcgcgctg 2094341



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>gb|AY423269.1| Streptomyces diastaticus 108 cytochrome P450 monooxygenase (mnp1),
            type I polyketide synthase (mnp2), and cytochrome P450
            monooxygenase (mnp3) genes, complete cds
          Length = 13513

 Score = 42.1 bits (21), Expect = 4.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 577  cgccgcgctgtccgccgccgccaac 601
            |||||| ||||||||||||||||||
Sbjct: 1036 cgccgccctgtccgccgccgccaac 1060



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>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome
          Length = 3561584

 Score = 42.1 bits (21), Expect = 4.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 501     ccgtcaccggcgcggcggtcgcgct 525
               |||||||||||| ||||||||||||
Sbjct: 3113731 ccgtcaccggcgaggcggtcgcgct 3113707



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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 42.1 bits (21), Expect = 4.1
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                                
Query: 487     cgcgctggcgggcgccgtcaccggcgcggcggt 519
               |||||||||||||  |||| |||||||||||||
Sbjct: 2224977 cgcgctggcgggcctcgtcgccggcgcggcggt 2225009



 Score = 42.1 bits (21), Expect = 4.1
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                                
Query: 493     ggcgggcgccgtcaccggcgcggcggtcgcgct 525
               |||| |||||| ||||||||||||||| |||||
Sbjct: 3985506 ggcgagcgccgccaccggcgcggcggtggcgct 3985538



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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 42.1 bits (21), Expect = 4.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 160     cgaactcggccacccgctcctcaaccgcg 188
               |||||||||||||||||| ||| ||||||
Sbjct: 2067285 cgaactcggccacccgctgctcgaccgcg 2067257



 Score = 42.1 bits (21), Expect = 4.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 499     cgccgtcaccggcgcggcggt 519
               |||||||||||||||||||||
Sbjct: 3198768 cgccgtcaccggcgcggcggt 3198748



 Score = 42.1 bits (21), Expect = 4.1
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                
Query: 486     gcgcgctggcgggcgccgtcaccggcgcggcgg 518
               ||||||||||||||| || |||||| |||||||
Sbjct: 4261840 gcgcgctggcgggcgacgccaccggggcggcgg 4261808



 Score = 42.1 bits (21), Expect = 4.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 498     gcgccgtcaccggcgcggcgg 518
               |||||||||||||||||||||
Sbjct: 5874669 gcgccgtcaccggcgcggcgg 5874689


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 152,974,724
Number of extensions: 8739303
Number of successful extensions: 185032
Number of sequences better than 10.0: 37
Number of HSP's gapped: 185029
Number of HSP's successfully gapped: 59
Length of query: 1078
Length of database: 18,610,659,111
Length adjustment: 23
Effective length of query: 1055
Effective length of database: 18,503,978,556
Effective search space: 19521697376580
Effective search space used: 19521697376580
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
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