ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf9h20 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001056419.1| Oryza sativa (japonica cultivar-group) Os03g0305600 (Os03g0305600) mRNA, complete cds Length = 839 Score = 464 bits (234), Expect = e-127 Identities = 443/512 (86%), Gaps = 3/512 (0%) Strand = Plus / Plus Query: 98 agcagccacgaggcgcgcaagttcgtggaggaggtgcgcggcctggagaagaactggatg 157 ||||||| ||| |||||| |||| |||| |||||||||||||||||||||||||||||| Sbjct: 117 agcagcctggagacgcgcacgttcctggacgaggtgcgcggcctggagaagaactggatg 176 Query: 158 ctcgaactcggccacccgctcctcaaccgcgtcgccgacagcttcgtcaaggccgccggg 217 |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 177 gtcgacctcggccacccgctcctcaaccgcgtcgccgagagcttcgtcaaggccgccggc 236 Query: 218 atcggcgcgatgcaggccgtcgcgcgggactcctactttatggccatcgaaggcgaatct 277 |||||||| | ||||| ||||||||||| || ||||| |||||||| ||||| || | Sbjct: 237 atcggcgcagtccaggcggtcgcgcgggagtcttacttcatggccatggaaggggagggt 296 Query: 278 gggggcaccggagcggtgtctgacgcgaccggcagcaggaaacggacgttcccggacctc 337 |||||||| ||||| ||||| ||| | |||||| |||||| || |||||||||| ||| Sbjct: 297 gggggcacgggagccgtgtccgactccaccggcgccaggaagcgatcgttcccggatctc 356 Query: 338 aatggagggacgagcaacagcaagtcagcggaggacatggtgaaaagcgtgagcaaggag 397 || ||||||| |||| |||||||||| |||| |||||||||||||||||||| ||| Sbjct: 357 aacggagggaacagca---gcaagtcagctgaggctatggtgaaaagcgtgagcaaagag 413 Query: 398 tcgttccagtgggggctcgcggcagggatgcactccggcctcacctacggactgacggag 457 || ||||||||||||||||||| ||| ||||||| || || |||||||| ||||||||| Sbjct: 414 tctctccagtgggggctcgcggccgggttgcactcggggctgacctacggcctgacggag 473 Query: 458 gtgcgcggggcccacgactggaagaacagcgcgctggcgggcgccgtcaccggcgcggcg 517 | ||||||| | ||||||||||||||||||| | ||||||||||| ||||||||||||| Sbjct: 474 gcgcgcgggacgcacgactggaagaacagcgtggtggcgggcgccctcaccggcgcggcc 533 Query: 518 gtcgcgctgacctcggacaactcatcgcatgagcggattgtgcagtgcgccatcaccggc 577 |||||||| ||||||||| | | ||||| |||||| | ||||||||||||||| ||||| Sbjct: 534 gtcgcgctcacctcggaccgcgcgtcgcacgagcgggtggtgcagtgcgccatcgccggc 593 Query: 578 gccgcgctgtccgccgccgccaacgtgctctc 609 |||||||||||| | ||||||||||||||||| Sbjct: 594 gccgcgctgtccacggccgccaacgtgctctc 625
>dbj|AK063714.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-120-C03, full insert sequence Length = 839 Score = 464 bits (234), Expect = e-127 Identities = 443/512 (86%), Gaps = 3/512 (0%) Strand = Plus / Plus Query: 98 agcagccacgaggcgcgcaagttcgtggaggaggtgcgcggcctggagaagaactggatg 157 ||||||| ||| |||||| |||| |||| |||||||||||||||||||||||||||||| Sbjct: 117 agcagcctggagacgcgcacgttcctggacgaggtgcgcggcctggagaagaactggatg 176 Query: 158 ctcgaactcggccacccgctcctcaaccgcgtcgccgacagcttcgtcaaggccgccggg 217 |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 177 gtcgacctcggccacccgctcctcaaccgcgtcgccgagagcttcgtcaaggccgccggc 236 Query: 218 atcggcgcgatgcaggccgtcgcgcgggactcctactttatggccatcgaaggcgaatct 277 |||||||| | ||||| ||||||||||| || ||||| |||||||| ||||| || | Sbjct: 237 atcggcgcagtccaggcggtcgcgcgggagtcttacttcatggccatggaaggggagggt 296 Query: 278 gggggcaccggagcggtgtctgacgcgaccggcagcaggaaacggacgttcccggacctc 337 |||||||| ||||| ||||| ||| | |||||| |||||| || |||||||||| ||| Sbjct: 297 gggggcacgggagccgtgtccgactccaccggcgccaggaagcgatcgttcccggatctc 356 Query: 338 aatggagggacgagcaacagcaagtcagcggaggacatggtgaaaagcgtgagcaaggag 397 || ||||||| |||| |||||||||| |||| |||||||||||||||||||| ||| Sbjct: 357 aacggagggaacagca---gcaagtcagctgaggctatggtgaaaagcgtgagcaaagag 413 Query: 398 tcgttccagtgggggctcgcggcagggatgcactccggcctcacctacggactgacggag 457 || ||||||||||||||||||| ||| ||||||| || || |||||||| ||||||||| Sbjct: 414 tctctccagtgggggctcgcggccgggttgcactcggggctgacctacggcctgacggag 473 Query: 458 gtgcgcggggcccacgactggaagaacagcgcgctggcgggcgccgtcaccggcgcggcg 517 | ||||||| | ||||||||||||||||||| | ||||||||||| ||||||||||||| Sbjct: 474 gcgcgcgggacgcacgactggaagaacagcgtggtggcgggcgccctcaccggcgcggcc 533 Query: 518 gtcgcgctgacctcggacaactcatcgcatgagcggattgtgcagtgcgccatcaccggc 577 |||||||| ||||||||| | | ||||| |||||| | ||||||||||||||| ||||| Sbjct: 534 gtcgcgctcacctcggaccgcgcgtcgcacgagcgggtggtgcagtgcgccatcgccggc 593 Query: 578 gccgcgctgtccgccgccgccaacgtgctctc 609 |||||||||||| | ||||||||||||||||| Sbjct: 594 gccgcgctgtccacggccgccaacgtgctctc 625
>gb|DQ245560.1| Zea mays clone 17480 mRNA sequence Length = 896 Score = 238 bits (120), Expect = 3e-59 Identities = 219/252 (86%) Strand = Plus / Plus Query: 358 caagtcagcggaggacatggtgaaaagcgtgagcaaggagtcgttccagtgggggctcgc 417 |||||| || |||| ||||||||||||||||||||| |||||||| |||||||||||||| Sbjct: 327 caagtcggcagaggccatggtgaaaagcgtgagcaaagagtcgttacagtgggggctcgc 386 Query: 418 ggcagggatgcactccggcctcacctacggactgacggaggtgcgcggggcccacgactg 477 ||| ||| |||||||||||||||||||||| || ||| |||||||||| | |||||||| Sbjct: 387 ggctggggtgcactccggcctcacctacggcctcgcgggggtgcgcgggacgcacgactg 446 Query: 478 gaagaacagcgcgctggcgggcgccgtcaccggcgcggcggtcgcgctgacctcggacaa 537 || ||||||||| |||| |||||| |||| ||||| ||||||||||| || ||||| | Sbjct: 447 gaggaacagcgccgtggctggcgccatcacgggcgccgcggtcgcgctcacgtcggagca 506 Query: 538 ctcatcgcatgagcggattgtgcagtgcgccatcaccggcgccgcgctgtccgccgccgc 597 | | ||||| |||| | | ||||||||||||||||||||||||||||| ||| | ||||| Sbjct: 507 cgcgtcgcacgagcaggtcgtgcagtgcgccatcaccggcgccgcgctctccacggccgc 566 Query: 598 caacgtgctctc 609 |||||||||||| Sbjct: 567 caacgtgctctc 578 Score = 121 bits (61), Expect = 6e-24 Identities = 103/117 (88%) Strand = Plus / Plus Query: 145 gaagaactggatgctcgaactcggccacccgctcctcaaccgcgtcgccgacagcttcgt 204 ||||||||||||||| || ||||||||||||||||| |||||||||||||| ||||||| Sbjct: 117 gaagaactggatgctggacctcggccacccgctcctgaaccgcgtcgccgagagcttcgc 176 Query: 205 caaggccgccgggatcggcgcgatgcaggccgtcgcgcgggactcctactttatggc 261 ||||||||| ||||||||||| ||||||| ||||| |||| || ||||| ||||| Sbjct: 177 caaggccgcggggatcggcgcagtgcaggcggtcgccagggaatcgtacttcatggc 233
>gb|AC135908.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1275B08, from chromosome 3, complete sequence Length = 108833 Score = 206 bits (104), Expect = 1e-49 Identities = 176/200 (88%) Strand = Plus / Minus Query: 410 gggctcgcggcagggatgcactccggcctcacctacggactgacggaggtgcgcggggcc 469 ||||||||||| ||| ||||||| || || |||||||| |||||||||| ||||||| | Sbjct: 33526 gggctcgcggccgggttgcactcggggctgacctacggcctgacggaggcgcgcgggacg 33467 Query: 470 cacgactggaagaacagcgcgctggcgggcgccgtcaccggcgcggcggtcgcgctgacc 529 ||||||||||||||||||| | ||||||||||| ||||||||||||| |||||||| ||| Sbjct: 33466 cacgactggaagaacagcgtggtggcgggcgccctcaccggcgcggccgtcgcgctcacc 33407 Query: 530 tcggacaactcatcgcatgagcggattgtgcagtgcgccatcaccggcgccgcgctgtcc 589 |||||| | | ||||| |||||| | ||||||||||||||| ||||||||||||||||| Sbjct: 33406 tcggaccgcgcgtcgcacgagcgggtggtgcagtgcgccatcgccggcgccgcgctgtcc 33347 Query: 590 gccgccgccaacgtgctctc 609 | ||||||||||||||||| Sbjct: 33346 acggccgccaacgtgctctc 33327 Score = 165 bits (83), Expect = 4e-37 Identities = 110/119 (92%) Strand = Plus / Minus Query: 98 agcagccacgaggcgcgcaagttcgtggaggaggtgcgcggcctggagaagaactggatg 157 ||||||| ||| |||||| |||| |||| |||||||||||||||||||||||||||||| Sbjct: 34426 agcagcctggagacgcgcacgttcctggacgaggtgcgcggcctggagaagaactggatg 34367 Query: 158 ctcgaactcggccacccgctcctcaaccgcgtcgccgacagcttcgtcaaggccgccgg 216 |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 34366 gtcgacctcggccacccgctcctcaaccgcgtcgccgagagcttcgtcaaggccgccgg 34308 Score = 48.1 bits (24), Expect = 0.066 Identities = 33/36 (91%) Strand = Plus / Minus Query: 376 ggtgaaaagcgtgagcaaggagtcgttccagtgggg 411 |||||||||||||||||| ||||| |||||||||| Sbjct: 33662 ggtgaaaagcgtgagcaaagagtctctccagtgggg 33627 Score = 46.1 bits (23), Expect = 0.26 Identities = 47/55 (85%) Strand = Plus / Minus Query: 217 gatcggcgcgatgcaggccgtcgcgcgggactcctactttatggccatcgaaggc 271 ||||||||| | ||||| ||||||||||| || ||||| |||||||| |||||| Sbjct: 34179 gatcggcgcagtccaggcggtcgcgcgggagtcttacttcatggccatggaaggc 34125
>gb|AY972619.1| Hordeum vulgare subsp. vulgare cultivar Morex subclone NRG098 cyclic nucleotide-gated ion channel 4 (Nec1) gene, complete cds Length = 9090 Score = 206 bits (104), Expect = 1e-49 Identities = 223/261 (85%), Gaps = 3/261 (1%) Strand = Plus / Plus Query: 622 ggcctcgtttggttaagggggattgggaaggttttgagagggaggaatttcacgggattg 681 |||||||||||||||||||||||||| ||||||||||||||||| |||| | ||||||| Sbjct: 3792 ggcctcgtttggttaagggggattggagaggttttgagagggagggattttaagggattg 3851 Query: 682 ggtgaatccnnnnnnnc-acccaatcctgtcaaatc-ccggggttttgcttccactcctc 739 ||||||||| | |||||||||| ||||||| |||||| |||||||||||| || Sbjct: 3852 ggtgaatccctttgttccacccaatcctctcaaatctccggggctttgcttccactagtc 3911 Query: 740 ctctgaggagggttttgaaacacatgaataggaatggattaaaggggaacggaggggatt 799 ||| ||||||||||||||||||||| |||| || ||||| |||| |||| |||||||| Sbjct: 3912 ctccgaggagggttttgaaacacattgatagaaagggattgaaggagaacacaggggatt 3971 Query: 800 ggcctaagcaaaccaatcctaccaaatggacgcgcgaggatctgtggggtttctgggtc- 858 || ||||||||||| ||||||||||||| || |||||||||||||||||||||| | Sbjct: 3972 gggctaagcaaacctctcctaccaaatgggcgtccgaggatctgtggggtttctggccct 4031 Query: 859 ctcggggattttcctctcaaa 879 | |||||||||| |||||||| Sbjct: 4032 cccggggatttttctctcaaa 4052
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 206 bits (104), Expect = 1e-49 Identities = 176/200 (88%) Strand = Plus / Plus Query: 410 gggctcgcggcagggatgcactccggcctcacctacggactgacggaggtgcgcggggcc 469 ||||||||||| ||| ||||||| || || |||||||| |||||||||| ||||||| | Sbjct: 10819462 gggctcgcggccgggttgcactcggggctgacctacggcctgacggaggcgcgcgggacg 10819521 Query: 470 cacgactggaagaacagcgcgctggcgggcgccgtcaccggcgcggcggtcgcgctgacc 529 ||||||||||||||||||| | ||||||||||| ||||||||||||| |||||||| ||| Sbjct: 10819522 cacgactggaagaacagcgtggtggcgggcgccctcaccggcgcggccgtcgcgctcacc 10819581 Query: 530 tcggacaactcatcgcatgagcggattgtgcagtgcgccatcaccggcgccgcgctgtcc 589 |||||| | | ||||| |||||| | ||||||||||||||| ||||||||||||||||| Sbjct: 10819582 tcggaccgcgcgtcgcacgagcgggtggtgcagtgcgccatcgccggcgccgcgctgtcc 10819641 Query: 590 gccgccgccaacgtgctctc 609 | ||||||||||||||||| Sbjct: 10819642 acggccgccaacgtgctctc 10819661 Score = 165 bits (83), Expect = 4e-37 Identities = 110/119 (92%) Strand = Plus / Plus Query: 98 agcagccacgaggcgcgcaagttcgtggaggaggtgcgcggcctggagaagaactggatg 157 ||||||| ||| |||||| |||| |||| |||||||||||||||||||||||||||||| Sbjct: 10818562 agcagcctggagacgcgcacgttcctggacgaggtgcgcggcctggagaagaactggatg 10818621 Query: 158 ctcgaactcggccacccgctcctcaaccgcgtcgccgacagcttcgtcaaggccgccgg 216 |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 10818622 gtcgacctcggccacccgctcctcaaccgcgtcgccgagagcttcgtcaaggccgccgg 10818680 Score = 48.1 bits (24), Expect = 0.066 Identities = 33/36 (91%) Strand = Plus / Plus Query: 376 ggtgaaaagcgtgagcaaggagtcgttccagtgggg 411 |||||||||||||||||| ||||| |||||||||| Sbjct: 10819326 ggtgaaaagcgtgagcaaagagtctctccagtgggg 10819361 Score = 46.1 bits (23), Expect = 0.26 Identities = 47/55 (85%) Strand = Plus / Plus Query: 217 gatcggcgcgatgcaggccgtcgcgcgggactcctactttatggccatcgaaggc 271 ||||||||| | ||||| ||||||||||| || ||||| |||||||| |||||| Sbjct: 10818809 gatcggcgcagtccaggcggtcgcgcgggagtcttacttcatggccatggaaggc 10818863
>gb|AY057933.1| Bromus inermis stress-inducible membrane pore protein (BG15) mRNA, complete cds Length = 819 Score = 81.8 bits (41), Expect = 5e-12 Identities = 44/45 (97%) Strand = Plus / Plus Query: 158 ctcgaactcggccacccgctcctcaaccgcgtcgccgacagcttc 202 ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 140 ctcgacctcggccacccgctcctcaaccgcgtcgccgacagcttc 184
>gb|U43718.1|TAU43718 Triticum aestivum pMA1951 mRNA, partial cds Length = 777 Score = 73.8 bits (37), Expect = 1e-09 Identities = 43/45 (95%) Strand = Plus / Minus Query: 158 ctcgaactcggccacccgctcctcaaccgcgtcgccgacagcttc 202 ||||| |||||||||||||| |||||||||||||||||||||||| Sbjct: 655 ctcgacctcggccacccgctgctcaaccgcgtcgccgacagcttc 611
>dbj|AK242170.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J075157P20, full insert sequence Length = 866 Score = 71.9 bits (36), Expect = 5e-09 Identities = 42/44 (95%) Strand = Plus / Plus Query: 159 tcgaactcggccacccgctcctcaaccgcgtcgccgacagcttc 202 |||| ||||||||||||||| ||||||||||||||||||||||| Sbjct: 161 tcgacctcggccacccgctcgtcaaccgcgtcgccgacagcttc 204 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 565 cgccatcaccggcgccgcgct 585 ||||||||||||||||||||| Sbjct: 552 cgccatcaccggcgccgcgct 572
>ref|NM_001049368.1| Oryza sativa (japonica cultivar-group) Os01g0303300 (Os01g0303300) mRNA, complete cds Length = 792 Score = 71.9 bits (36), Expect = 5e-09 Identities = 42/44 (95%) Strand = Plus / Plus Query: 159 tcgaactcggccacccgctcctcaaccgcgtcgccgacagcttc 202 |||| ||||||||||||||| ||||||||||||||||||||||| Sbjct: 344 tcgacctcggccacccgctcgtcaaccgcgtcgccgacagcttc 387 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 565 cgccatcaccggcgccgcgct 585 ||||||||||||||||||||| Sbjct: 735 cgccatcaccggcgccgcgct 755
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 71.9 bits (36), Expect = 5e-09 Identities = 42/44 (95%) Strand = Plus / Minus Query: 159 tcgaactcggccacccgctcctcaaccgcgtcgccgacagcttc 202 |||| ||||||||||||||| ||||||||||||||||||||||| Sbjct: 11221386 tcgacctcggccacccgctcgtcaaccgcgtcgccgacagcttc 11221343 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 565 cgccatcaccggcgccgcgct 585 ||||||||||||||||||||| Sbjct: 11220236 cgccatcaccggcgccgcgct 11220216
>dbj|AP003206.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1146F03 Length = 137047 Score = 71.9 bits (36), Expect = 5e-09 Identities = 42/44 (95%) Strand = Plus / Minus Query: 159 tcgaactcggccacccgctcctcaaccgcgtcgccgacagcttc 202 |||| ||||||||||||||| ||||||||||||||||||||||| Sbjct: 113179 tcgacctcggccacccgctcgtcaaccgcgtcgccgacagcttc 113136 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 565 cgccatcaccggcgccgcgct 585 ||||||||||||||||||||| Sbjct: 112029 cgccatcaccggcgccgcgct 112009
>dbj|AP002871.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0475H04 Length = 143337 Score = 71.9 bits (36), Expect = 5e-09 Identities = 42/44 (95%) Strand = Plus / Minus Query: 159 tcgaactcggccacccgctcctcaaccgcgtcgccgacagcttc 202 |||| ||||||||||||||| ||||||||||||||||||||||| Sbjct: 8791 tcgacctcggccacccgctcgtcaaccgcgtcgccgacagcttc 8748 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 565 cgccatcaccggcgccgcgct 585 ||||||||||||||||||||| Sbjct: 7641 cgccatcaccggcgccgcgct 7621
>gb|AY695110.1| Xerophyta humilis dehydration up-regulated putative membrane pore protein mRNA, complete cds Length = 655 Score = 71.9 bits (36), Expect = 5e-09 Identities = 72/84 (85%) Strand = Plus / Plus Query: 151 ctggatgctcgaactcggccacccgctcctcaaccgcgtcgccgacagcttcgtcaaggc 210 ||||||| |||| ||||| |||||||| ||||| |||||| | || |||||||||||||| Sbjct: 135 ctggatgttcgatctcggacacccgctgctcaatcgcgtcacggagagcttcgtcaaggc 194 Query: 211 cgccgggatcggcgcgatgcaggc 234 |||||||| || ||||| ||||| Sbjct: 195 tgccgggattggggcgattcaggc 218
>gb|BT017732.1| Zea mays clone EL01N0448C02.c mRNA sequence Length = 868 Score = 69.9 bits (35), Expect = 2e-08 Identities = 38/39 (97%) Strand = Plus / Plus Query: 164 ctcggccacccgctcctcaaccgcgtcgccgacagcttc 202 |||||||||||||| |||||||||||||||||||||||| Sbjct: 173 ctcggccacccgctgctcaaccgcgtcgccgacagcttc 211 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 469 ccacgactggaagaacagcgc 489 ||||||||||||||||||||| Sbjct: 472 ccacgactggaagaacagcgc 492 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 565 cgccatcaccggcgccgcgct 585 ||||||||||||||||||||| Sbjct: 571 cgccatcaccggcgccgcgct 591
>gb|AY111174.1| Zea mays CL27726_1 mRNA sequence Length = 802 Score = 69.9 bits (35), Expect = 2e-08 Identities = 38/39 (97%) Strand = Plus / Minus Query: 164 ctcggccacccgctcctcaaccgcgtcgccgacagcttc 202 |||||||||||||| |||||||||||||||||||||||| Sbjct: 645 ctcggccacccgctgctcaaccgcgtcgccgacagcttc 607 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 565 cgccatcaccggcgccgcgct 585 ||||||||||||||||||||| Sbjct: 247 cgccatcaccggcgccgcgct 227 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 469 ccacgactggaagaacagcgc 489 ||||||||||||||||||||| Sbjct: 346 ccacgactggaagaacagcgc 326
>gb|DQ245984.1| Zea mays clone 93911 mRNA sequence Length = 848 Score = 63.9 bits (32), Expect = 1e-06 Identities = 35/36 (97%) Strand = Plus / Plus Query: 167 ggccacccgctcctcaaccgcgtcgccgacagcttc 202 ||||||||||| |||||||||||||||||||||||| Sbjct: 186 ggccacccgctgctcaaccgcgtcgccgacagcttc 221 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 469 ccacgactggaagaacagcgc 489 ||||||||||||||||||||| Sbjct: 482 ccacgactggaagaacagcgc 502
>emb|BX640416.1| Bordetella pertussis strain Tohama I, complete genome; segment 6/12 Length = 349354 Score = 50.1 bits (25), Expect = 0.017 Identities = 28/29 (96%) Strand = Plus / Minus Query: 489 cgctggcgggcgccgtcaccggcgcggcg 517 ||||||||||||||| ||||||||||||| Sbjct: 259157 cgctggcgggcgccggcaccggcgcggcg 259129
>gb|CP000458.1| Burkholderia cenocepacia HI2424 chromosome 1, complete genome Length = 3483902 Score = 48.1 bits (24), Expect = 0.066 Identities = 30/32 (93%) Strand = Plus / Minus Query: 493 ggcgggcgccgtcaccggcgcggcggtcgcgc 524 |||||||||||| ||||||||| ||||||||| Sbjct: 2709902 ggcgggcgccgtgaccggcgcgtcggtcgcgc 2709871
>gb|CP000378.1| Burkholderia cenocepacia AU 1054 chromosome 1, complete sequence Length = 3294563 Score = 48.1 bits (24), Expect = 0.066 Identities = 30/32 (93%) Strand = Plus / Minus Query: 493 ggcgggcgccgtcaccggcgcggcggtcgcgc 524 |||||||||||| ||||||||| ||||||||| Sbjct: 2025532 ggcgggcgccgtgaccggcgcgtcggtcgcgc 2025501
>ref|NM_001062199.1| Oryza sativa (japonica cultivar-group) Os05g0439200 (Os05g0439200) mRNA, partial cds Length = 802 Score = 46.1 bits (23), Expect = 0.26 Identities = 23/23 (100%) Strand = Plus / Minus Query: 576 gcgccgcgctgtccgccgccgcc 598 ||||||||||||||||||||||| Sbjct: 248 gcgccgcgctgtccgccgccgcc 226
>gb|CP000113.1| Myxococcus xanthus DK 1622, complete genome Length = 9139763 Score = 46.1 bits (23), Expect = 0.26 Identities = 23/23 (100%) Strand = Plus / Minus Query: 571 caccggcgccgcgctgtccgccg 593 ||||||||||||||||||||||| Sbjct: 1845653 caccggcgccgcgctgtccgccg 1845631
>gb|AC134930.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0042J17, complete sequence Length = 124139 Score = 46.1 bits (23), Expect = 0.26 Identities = 23/23 (100%) Strand = Plus / Minus Query: 576 gcgccgcgctgtccgccgccgcc 598 ||||||||||||||||||||||| Sbjct: 87729 gcgccgcgctgtccgccgccgcc 87707
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5 Length = 29737217 Score = 46.1 bits (23), Expect = 0.26 Identities = 23/23 (100%) Strand = Plus / Minus Query: 576 gcgccgcgctgtccgccgccgcc 598 ||||||||||||||||||||||| Sbjct: 21370407 gcgccgcgctgtccgccgccgcc 21370385
>dbj|AK069208.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023009C22, full insert sequence Length = 803 Score = 46.1 bits (23), Expect = 0.26 Identities = 23/23 (100%) Strand = Plus / Minus Query: 576 gcgccgcgctgtccgccgccgcc 598 ||||||||||||||||||||||| Sbjct: 249 gcgccgcgctgtccgccgccgcc 227
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 44.1 bits (22), Expect = 1.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 160 cgaactcggccacccgctcctc 181 |||||||||||||||||||||| Sbjct: 2671198 cgaactcggccacccgctcctc 2671219
>emb|BX572602.1| Rhodopseudomonas palustris CGA009 complete genome; segment 10/16 Length = 349981 Score = 44.1 bits (22), Expect = 1.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 491 ctggcgggcgccgtcaccggcg 512 |||||||||||||||||||||| Sbjct: 163811 ctggcgggcgccgtcaccggcg 163832
>gb|CP000482.1| Pelobacter propionicus DSM 2379, complete genome Length = 4008000 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 203 gtcaaggccgccgggatcggc 223 ||||||||||||||||||||| Sbjct: 1600916 gtcaaggccgccgggatcggc 1600936
>emb|CT573213.2| Frankia alni str. ACN14A chromosome, complete sequence Length = 7497934 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 574 cggcgccgcgctgtccgccgc 594 ||||||||||||||||||||| Sbjct: 7346053 cggcgccgcgctgtccgccgc 7346073
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 42.1 bits (21), Expect = 4.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 181 caaccgcgtcgccgacagcttcgtc 205 |||||||||| |||||||||||||| Sbjct: 1540348 caaccgcgtcaccgacagcttcgtc 1540372
>gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence Length = 1395069 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 208 ggccgccgggatcggcgcgat 228 ||||||||||||||||||||| Sbjct: 1323064 ggccgccgggatcggcgcgat 1323044
>gb|AC150858.4| Bos taurus BAC CH240-431L22 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)) complete sequence Length = 166138 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 840 tctgtggggtttctgggtcct 860 ||||||||||||||||||||| Sbjct: 101358 tctgtggggtttctgggtcct 101378
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 506 accggcgcggcggtcgcgctg 526 ||||||||||||||||||||| Sbjct: 2094361 accggcgcggcggtcgcgctg 2094341
>gb|AY423269.1| Streptomyces diastaticus 108 cytochrome P450 monooxygenase (mnp1), type I polyketide synthase (mnp2), and cytochrome P450 monooxygenase (mnp3) genes, complete cds Length = 13513 Score = 42.1 bits (21), Expect = 4.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 577 cgccgcgctgtccgccgccgccaac 601 |||||| |||||||||||||||||| Sbjct: 1036 cgccgccctgtccgccgccgccaac 1060
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 42.1 bits (21), Expect = 4.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 501 ccgtcaccggcgcggcggtcgcgct 525 |||||||||||| |||||||||||| Sbjct: 3113731 ccgtcaccggcgaggcggtcgcgct 3113707
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 4.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 487 cgcgctggcgggcgccgtcaccggcgcggcggt 519 ||||||||||||| |||| ||||||||||||| Sbjct: 2224977 cgcgctggcgggcctcgtcgccggcgcggcggt 2225009 Score = 42.1 bits (21), Expect = 4.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 493 ggcgggcgccgtcaccggcgcggcggtcgcgct 525 |||| |||||| ||||||||||||||| ||||| Sbjct: 3985506 ggcgagcgccgccaccggcgcggcggtggcgct 3985538
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 4.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 160 cgaactcggccacccgctcctcaaccgcg 188 |||||||||||||||||| ||| |||||| Sbjct: 2067285 cgaactcggccacccgctgctcgaccgcg 2067257 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 499 cgccgtcaccggcgcggcggt 519 ||||||||||||||||||||| Sbjct: 3198768 cgccgtcaccggcgcggcggt 3198748 Score = 42.1 bits (21), Expect = 4.1 Identities = 30/33 (90%) Strand = Plus / Minus Query: 486 gcgcgctggcgggcgccgtcaccggcgcggcgg 518 ||||||||||||||| || |||||| ||||||| Sbjct: 4261840 gcgcgctggcgggcgacgccaccggggcggcgg 4261808 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 498 gcgccgtcaccggcgcggcgg 518 ||||||||||||||||||||| Sbjct: 5874669 gcgccgtcaccggcgcggcgg 5874689 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 152,974,724 Number of extensions: 8739303 Number of successful extensions: 185032 Number of sequences better than 10.0: 37 Number of HSP's gapped: 185029 Number of HSP's successfully gapped: 59 Length of query: 1078 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1055 Effective length of database: 18,503,978,556 Effective search space: 19521697376580 Effective search space used: 19521697376580 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
