ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf9h10 |
|---|---|
| Clone Library Name | barley_pub |
>Q6L440:R1A3_SOLDE Putative late blight resistance protein homolog R1A-3 - Solanum| demissum (Wild potato) Length = 775 Score = 43.1 bits (100), Expect = 0.001 Identities = 20/58 (34%), Positives = 40/58 (68%), Gaps = 3/58 (5%) Frame = +3 Query: 114 KKVVLKLDLHDDRQKQRALKAVSTLHGIDQIAVDMNDQKMTVVGTVDPVD---LVGRL 278 KK++L+ D+ D++ A K +++L G+D I++DM ++K+TV G ++ + +VG+L Sbjct: 712 KKMILQFDISHDKEIDNAFKRLASLPGVDSISIDMIEKKLTVGGDMNANEVRLVVGKL 769
>Q6L3Z4:R1B12_SOLDE Putative late blight resistance protein homolog R1B-12 - Solanum| demissum (Wild potato) Length = 1348 Score = 42.4 bits (98), Expect = 0.003 Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 3/58 (5%) Frame = +3 Query: 114 KKVVLKLDLHDDRQKQRALKAVSTLHGIDQIAVDMNDQKMTVVGTVDPVD---LVGRL 278 KK+VLK D ++++ +A + +L GI IAVD N++K V+G +D + +VG+L Sbjct: 1285 KKMVLKFDTSNEKEISKAFDRLLSLPGIQSIAVDSNEKKFIVIGDMDADEVRLVVGKL 1342
>Q6L403:R1B17_SOLDE Putative late blight resistance protein homolog R1B-17 - Solanum| demissum (Wild potato) Length = 1312 Score = 36.6 bits (83), Expect = 0.14 Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 3/61 (4%) Frame = +3 Query: 114 KKVVLKLDLHDDRQKQRALKAVSTLHGIDQIAVDMNDQKMTVVGTVDPVD---LVGRLRS 284 KK++ K+D+ ++ + K ++ L GI +A D N +K+TV G +D + +V +LR Sbjct: 1249 KKMMWKVDVGVNKGRLETFKRLAPLPGIKSVAFDFNKKKLTVTGDMDANEVQLVVSKLRK 1308 Query: 285 K 287 + Sbjct: 1309 R 1309
>Q6L406:R1B19_SOLDE Putative late blight resistance protein homolog R1B-19 - Solanum| demissum (Wild potato) Length = 1326 Score = 36.2 bits (82), Expect = 0.18 Identities = 17/47 (36%), Positives = 27/47 (57%) Frame = +3 Query: 114 KKVVLKLDLHDDRQKQRALKAVSTLHGIDQIAVDMNDQKMTVVGTVD 254 +K LKL+L D +A K + GI+ ++ D ++K+TV G VD Sbjct: 1210 EKKTLKLNLSHDEDIPKAFKRLFLCPGIESVSTDRKEKKLTVTGDVD 1256
>Q9JJ89:CCD86_MOUSE Coiled-coil domain-containing protein 86 - Mus musculus (Mouse)| Length = 426 Score = 34.3 bits (77), Expect = 0.69 Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 1/62 (1%) Frame = +2 Query: 8 SPVSNIKPTFLPSPSPIETPIPFIPRPPTSVIHGGKEGRAEAG-PARRQAEAEGAQGRLH 184 SP S P LPSP P P P PP S+ G + A G P RQ +G+ R Sbjct: 107 SPGSPCPPLSLPSPGPQPETSPGSPCPPLSLPSPGPQPEASPGSPGPRQDADDGSPQRQP 166 Query: 185 SP 190 P Sbjct: 167 EP 168
>Q9JLG8:CAN15_MOUSE Calpain-15 - Mus musculus (Mouse)| Length = 1095 Score = 33.1 bits (74), Expect = 1.5 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 6/54 (11%) Frame = +2 Query: 35 FLPSPSPIETPIPFI----PRPPTSVIHGGKEGRAEAGPARRQ--AEAEGAQGR 178 F P P P +P I P+PPT ++ G+ EAGP R E A+GR Sbjct: 69 FTPEPVPGAPLLPIINGVLPKPPTILVEPKGSGKEEAGPVRTAGLVATEPARGR 122
>Q9UHV7:TR240_HUMAN Thyroid hormone receptor-associated protein complex 240 kDa component| - Homo sapiens (Human) Length = 2174 Score = 32.7 bits (73), Expect = 2.0 Identities = 21/61 (34%), Positives = 25/61 (40%) Frame = +2 Query: 8 SPVSNIKPTFLPSPSPIETPIPFIPRPPTSVIHGGKEGRAEAGPARRQAEAEGAQGRLHS 187 +P SN LPSPS P P PR P + R GPA Q + L+S Sbjct: 991 APPSNSGAGILPSPSTPRFPTPRTPRTP-------RTPRGAGGPASAQGSVKYENSDLYS 1043 Query: 188 P 190 P Sbjct: 1044 P 1044
>Q5T4W7:ARTN_HUMAN Artemin precursor - Homo sapiens (Human)| Length = 220 Score = 32.7 bits (73), Expect = 2.0 Identities = 23/50 (46%), Positives = 28/50 (56%), Gaps = 1/50 (2%) Frame = +2 Query: 41 PSPSPIETPIPFIPRPPTSVIHGGKEGRAEAGPARRQAEAEGAQG-RLHS 187 P P P P P P PP+++ GG+ RA GP R A A GA+G RL S Sbjct: 81 PPPQP-SRPAPPPPAPPSALPRGGRAARA-GGPGSR-ARAAGARGCRLRS 127
>Q9D2G5:SYNJ2_MOUSE Synaptojanin-2 - Mus musculus (Mouse)| Length = 1434 Score = 32.3 bits (72), Expect = 2.6 Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 1/52 (1%) Frame = +2 Query: 38 LPSPSPIE-TPIPFIPRPPTSVIHGGKEGRAEAGPARRQAEAEGAQGRLHSP 190 L +P PI TPIP +P+P T G EGR +G EA G + SP Sbjct: 1215 LETPPPITATPIPPVPKPRTLQPGKGVEGRPSSGKPEPD-EAPSVTGTVESP 1265
>Q9LZX4:FLA10_ARATH Fasciclin-like arabinogalactan protein 10 precursor - Arabidopsis| thaliana (Mouse-ear cress) Length = 422 Score = 32.3 bits (72), Expect = 2.6 Identities = 18/56 (32%), Positives = 24/56 (42%) Frame = +2 Query: 11 PVSNIKPTFLPSPSPIETPIPFIPRPPTSVIHGGKEGRAEAGPARRQAEAEGAQGR 178 PVS PT SPSP+E P P PP + E E P+ +E + + Sbjct: 345 PVSAPTPTPAKSPSPVEAPSPTAASPPAPPV---DESSPEGAPSDSPTSSENSNAK 397
>Q6PRD1:GP179_HUMAN Probable G-protein coupled receptor 179 precursor - Homo sapiens| (Human) Length = 2367 Score = 31.2 bits (69), Expect = 5.8 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 4/61 (6%) Frame = +2 Query: 5 LSPVSNIKPTFLPS----PSPIETPIPFIPRPPTSVIHGGKEGRAEAGPARRQAEAEGAQ 172 LSP S + P LP+ P+P P+P P+ P + + AE + EG Sbjct: 954 LSPTSTLAPALLPALAPTPAPALAPVPVSPQSPNLLTYICPWENAELPAKQENVPQEGPS 1013 Query: 173 G 175 G Sbjct: 1014 G 1014
>P19275:VTP3_TTV1V Viral protein TPX - Thermoproteus tenax virus 1 (strain VT3) (TTV1)| Length = 474 Score = 30.8 bits (68), Expect = 7.6 Identities = 13/31 (41%), Positives = 19/31 (61%) Frame = +2 Query: 2 TLSPVSNIKPTFLPSPSPIETPIPFIPRPPT 94 T++P+S+ PT P+P+P TP P PT Sbjct: 269 TVTPISSPSPTPTPTPTPTPTPTPTPTPTPT 299
>O40955:POLN_RUBVR Non-structural polyprotein p200 - Rubella virus (strain vaccine| RA27/3) (RUBV) Length = 2116 Score = 30.8 bits (68), Expect = 7.6 Identities = 16/41 (39%), Positives = 18/41 (43%) Frame = +2 Query: 41 PSPSPIETPIPFIPRPPTSVIHGGKEGRAEAGPARRQAEAE 163 P P+P P P P PP G AGPA R +AE Sbjct: 746 PPPAPARDPPPPAPSPPAPPRAGDPVPPTSAGPADRARDAE 786
>Q9JIR4:RIMS1_RAT Regulating synaptic membrane exocytosis protein 1 - Rattus| norvegicus (Rat) Length = 1615 Score = 30.4 bits (67), Expect = 9.9 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 2/61 (3%) Frame = +2 Query: 11 PVSNIKPTFLPSPSPIETPIPFIPRPPTSVIHGGKEGRAEAGPA--RRQAEAEGAQGRLH 184 P + P P+P P E P P +P P K+GR + G A R+A+ E A+ L Sbjct: 458 PTEHGPPPPRPAPGPAEPPEPRVPEPLR------KQGRLDPGSAVLLRKAKREKAESMLR 511 Query: 185 S 187 + Sbjct: 512 N 512
>Q6X2U4:POLN_RUBVB Non-structural polyprotein p200 - Rubella virus (strain BRD1)| (RUBV) Length = 2116 Score = 30.4 bits (67), Expect = 9.9 Identities = 15/41 (36%), Positives = 18/41 (43%) Frame = +2 Query: 41 PSPSPIETPIPFIPRPPTSVIHGGKEGRAEAGPARRQAEAE 163 P P+P+ P P P PP G A PA R +AE Sbjct: 746 PPPAPVRDPPPLPPSPPAPRRAGDPASPISAEPADRARDAE 786
>P10474:GUNB_CALSA Endoglucanase/exoglucanase B precursor [Includes: Endoglucanase -| Caldocellum saccharolyticum (Caldicellulosiruptor saccharolyticus) Length = 1039 Score = 30.4 bits (67), Expect = 9.9 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 4/38 (10%) Frame = +2 Query: 2 TLSPVSNIKPTFLPSPSPIETPIP---FIPRP-PTSVI 103 T +P + PT P+P+P +T IP P P PTS I Sbjct: 584 TATPTPTLSPTVTPTPAPTQTAIPTPTLTPNPTPTSSI 621
>Q7RX99:ATG1_NEUCR Serine/threonine-protein kinase atg-1 - Neurospora crassa| Length = 932 Score = 30.4 bits (67), Expect = 9.9 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%) Frame = +2 Query: 41 PSPSPIETPIPFIPRP--PTSVIHGGKEG 121 PSP P+ P P P P PT +I GK+G Sbjct: 618 PSPVPMYNPFPTYPAPNTPTGLISDGKQG 646 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 115,442,665 Number of extensions: 2363078 Number of successful extensions: 8491 Number of sequences better than 10.0: 17 Number of HSP's gapped: 8310 Number of HSP's successfully gapped: 17 Length of query: 296 Length of database: 100,686,439 Length adjustment: 112 Effective length of query: 184 Effective length of database: 69,965,399 Effective search space: 12873633416 Effective search space used: 12873633416 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
