ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf9d05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AK069440:Os04g0499200 161 4e-40
2AK119859: 28 5.4
3AK112094:Os03g0851600 28 5.4
4AK101177:Os03g0851600 28 5.4
5Os09g0455400:Os09g0455400 28 9.2
6Os04g0552000:Os04g0552000 28 9.2

>AK069440:Os04g0499200 |
          Length = 111
 Score =  161 bits (408), Expect = 4e-40
 Identities = 78/111 (70%), Positives = 90/111 (81%), Gaps = 8/111 (7%)
 Frame = +1

Query: 178 MAGRHTIVLMQPSPNKASRTFMDFSSLNQALDG--------ICARYEKKIMDINPLARNF 333
           MAGRHTI+LMQPS N+A+RTFMDF+S+N ALDG        IC  YE+KI DINP+AR+ 
Sbjct: 1   MAGRHTIILMQPSQNRATRTFMDFNSVNHALDGRLLYGMTGICGLYERKIRDINPMARDL 60

Query: 334 TYDITDLYNFIDGLADISALVYDHQLQAFLPYDRQWIKQKMFQHLKNQARQ 486
           TYDI DLYNFIDGL DISALV+D  L AFLPYDR+WIKQ+MFQHLK  A+Q
Sbjct: 61  TYDINDLYNFIDGLTDISALVFDRSLHAFLPYDRRWIKQEMFQHLKRLAQQ 111



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>AK119859: |
          Length = 727

 Score = 28.5 bits (62), Expect = 5.4
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = -2

Query: 170 AQKQKQMQKQGSPAQASVGPKNPRRRDQRPRLSCEKRERSGVEPRRNTAR 21
           A ++K+++KQ    +     K  RRR +R +    ++ER   + RR   R
Sbjct: 173 AVREKELEKQRQIEREERAKKEERRRREREQEEAREKERQAEKERRRKER 222



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>AK112094:Os03g0851600 |
          Length = 476

 Score = 28.5 bits (62), Expect = 5.4
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -2

Query: 137 SPAQASVGPKNPRRRDQRPRLSCEKRERSGV 45
           S + ASV P+ PR  +++P+L  E++E   +
Sbjct: 107 SSSSASVPPERPRALEKKPKLKIEQKEHQNL 137



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>AK101177:Os03g0851600 |
          Length = 561

 Score = 28.5 bits (62), Expect = 5.4
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -2

Query: 137 SPAQASVGPKNPRRRDQRPRLSCEKRERSGV 45
           S + ASV P+ PR  +++P+L  E++E   +
Sbjct: 172 SSSSASVPPERPRALEKKPKLKIEQKEHQNL 202



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>Os09g0455400:Os09g0455400 |
          Length = 511

 Score = 27.7 bits (60), Expect = 9.2
 Identities = 19/66 (28%), Positives = 34/66 (51%)
 Frame = -2

Query: 215 DGCMRTMVCLPAILSAQKQKQMQKQGSPAQASVGPKNPRRRDQRPRLSCEKRERSGVEPR 36
           +G + ++V LP           +++ SP++ S  P+  RRRD+ P     +R+RS   P 
Sbjct: 5   EGRLASVVHLPGRSRVSASPSPRRRRSPSR-SPSPRRNRRRDRSPSPYRSRRDRS-PSPY 62

Query: 35  RNTARR 18
           R+  R+
Sbjct: 63  RDRRRQ 68



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>Os04g0552000:Os04g0552000 |
          Length = 431

 Score = 27.7 bits (60), Expect = 9.2
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -2

Query: 203 RTMVCLPAILSAQKQKQMQKQGSPAQASVGPKNPRRRDQRPRLSCE 66
           +T+V    I S  K        +   A   P+ PRRR +R RLSC+
Sbjct: 240 KTLVASNVIPSGWKPGMSYISTASEAARRRPRQPRRRRRRRRLSCQ 285


  Database: orf_amino.fa.out
    Posted date:  Jul 26, 2007 11:37 AM
  Number of letters in database: 15,399,855
  Number of sequences in database:  40,041
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 40041
Number of Hits to DB: 21,433,576
Number of extensions: 461341
Number of successful extensions: 1436
Number of sequences better than 10.0: 6
Number of HSP's gapped: 1434
Number of HSP's successfully gapped: 6
Length of query: 260
Length of database: 15,399,855
Length adjustment: 99
Effective length of query: 161
Effective length of database: 11,435,796
Effective search space: 1841163156
Effective search space used: 1841163156
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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