ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf9b15 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001064312.1| Oryza sativa (japonica cultivar-group) Os06g0530200 (Os06g0530200) mRNA, complete cds Length = 606 Score = 196 bits (99), Expect = 7e-47 Identities = 245/296 (82%), Gaps = 9/296 (3%) Strand = Plus / Plus Query: 114 agatgccgcgcattccaatgatcagattccccaagaggcatctcaaagtcccatccccac 173 |||||||||| ||||| |||||| |||||||||||| ||||||| |||||||||||| Sbjct: 97 agatgccgcggattccgctgatcaagttccccaagaggaatctcaagatcccatccccac 156 Query: 174 c------agcggcgcagcctgcagatcagcacgcgaccctcatgtcccgattgggagcta 227 | ||||||||| |||||||||||||||||| ||||| ||||||||||||||| || Sbjct: 157 ccccaccagcggcgcaacctgcagatcagcacgcgtccctcttgtcccgattgggagtta 216 Query: 228 aagtagatgcaccatcttct---ggagagnnnnnnnnttaccgctttagatcagatgtgc 284 || ||| |||||||||||| || ||| ||||||||||||||||||||||| Sbjct: 217 aatcagaggcaccatcttcttccggggagattaaaaattaccgctttagatcagatgtgc 276 Query: 285 cacccgcaccttctcataatgctgttggagggccagcttcacaacttcccaagcgcaaac 344 | || |||||||| ||| |||||||||||||||||||||| ||||| || ||||| | Sbjct: 277 cttccccaccttcttatacggctgttggagggccagcttcactccttcctaaacgcaagc 336 Query: 345 cactctctgaggaagagattgaagctatcatgcaaggcggtgtcttctgatattgc 400 |||| || |||||||| ||||| |||||||||||||| ||| ||| |||||||||| Sbjct: 337 cactgtcagaggaagaaattgaggctatcatgcaaggtggtatctactgatattgc 392
>dbj|AK104077.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-028-D06, full insert sequence Length = 600 Score = 196 bits (99), Expect = 7e-47 Identities = 245/296 (82%), Gaps = 9/296 (3%) Strand = Plus / Plus Query: 114 agatgccgcgcattccaatgatcagattccccaagaggcatctcaaagtcccatccccac 173 |||||||||| ||||| |||||| |||||||||||| ||||||| |||||||||||| Sbjct: 71 agatgccgcggattccgctgatcaagttccccaagaggaatctcaagatcccatccccac 130 Query: 174 c------agcggcgcagcctgcagatcagcacgcgaccctcatgtcccgattgggagcta 227 | ||||||||| |||||||||||||||||| ||||| ||||||||||||||| || Sbjct: 131 ccccaccagcggcgcaacctgcagatcagcacgcgtccctcttgtcccgattgggagtta 190 Query: 228 aagtagatgcaccatcttct---ggagagnnnnnnnnttaccgctttagatcagatgtgc 284 || ||| |||||||||||| || ||| ||||||||||||||||||||||| Sbjct: 191 aatcagaggcaccatcttcttccggggagattaaaaattaccgctttagatcagatgtgc 250 Query: 285 cacccgcaccttctcataatgctgttggagggccagcttcacaacttcccaagcgcaaac 344 | || |||||||| ||| |||||||||||||||||||||| ||||| || ||||| | Sbjct: 251 cttccccaccttcttatacggctgttggagggccagcttcactccttcctaaacgcaagc 310 Query: 345 cactctctgaggaagagattgaagctatcatgcaaggcggtgtcttctgatattgc 400 |||| || |||||||| ||||| |||||||||||||| ||| ||| |||||||||| Sbjct: 311 cactgtcagaggaagaaattgaggctatcatgcaaggtggtatctactgatattgc 366
>dbj|AK073116.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033020J17, full insert sequence Length = 609 Score = 196 bits (99), Expect = 7e-47 Identities = 245/296 (82%), Gaps = 9/296 (3%) Strand = Plus / Plus Query: 114 agatgccgcgcattccaatgatcagattccccaagaggcatctcaaagtcccatccccac 173 |||||||||| ||||| |||||| |||||||||||| ||||||| |||||||||||| Sbjct: 98 agatgccgcggattccgctgatcaagttccccaagaggaatctcaagatcccatccccac 157 Query: 174 c------agcggcgcagcctgcagatcagcacgcgaccctcatgtcccgattgggagcta 227 | ||||||||| |||||||||||||||||| ||||| ||||||||||||||| || Sbjct: 158 ccccaccagcggcgcaacctgcagatcagcacgcgtccctcttgtcccgattgggagtta 217 Query: 228 aagtagatgcaccatcttct---ggagagnnnnnnnnttaccgctttagatcagatgtgc 284 || ||| |||||||||||| || ||| ||||||||||||||||||||||| Sbjct: 218 aatcagaggcaccatcttcttccggggagattaaaaattaccgctttagatcagatgtgc 277 Query: 285 cacccgcaccttctcataatgctgttggagggccagcttcacaacttcccaagcgcaaac 344 | || |||||||| ||| |||||||||||||||||||||| ||||| || ||||| | Sbjct: 278 cttccccaccttcttatacggctgttggagggccagcttcactccttcctaaacgcaagc 337 Query: 345 cactctctgaggaagagattgaagctatcatgcaaggcggtgtcttctgatattgc 400 |||| || |||||||| ||||| |||||||||||||| ||| ||| |||||||||| Sbjct: 338 cactgtcagaggaagaaattgaggctatcatgcaaggtggtatctactgatattgc 393
>emb|CT828193.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI013E09, full insert sequence Length = 631 Score = 172 bits (87), Expect = 1e-39 Identities = 201/241 (83%), Gaps = 3/241 (1%) Strand = Plus / Plus Query: 163 cccatccccaccagcggcgcagcctgcagatcagcacgcgaccctcatgtcccgattggg 222 |||| ||||||| |||||||| |||||||||||||| ||| ||||| |||| |||||||| Sbjct: 165 cccacccccacctgcggcgcaacctgcagatcagcatgcgtccctcctgtctcgattggg 224 Query: 223 agctaaagtagatgcaccatcttct---ggagagnnnnnnnnttaccgctttagatcaga 279 || |||| ||| |||||||||||| || ||| |||||||||||||||||| Sbjct: 225 agttaaatcagaggcaccatcttcttccggggagattaagaattaccgctttagatcaga 284 Query: 280 tgtgccacccgcaccttctcataatgctgttggagggccagcttcacaacttcccaagcg 339 |||||| || |||||||| ||| |||||||||||||||||||||| ||||| || || Sbjct: 285 tgtgccttccccaccttcttatacggctgttggagggccagcttcactccttcctaaacg 344 Query: 340 caaaccactctctgaggaagagattgaagctatcatgcaaggcggtgtcttctgatattg 399 ||| ||||| || |||||||| ||||| |||||||||||||||||| ||| ||||||||| Sbjct: 345 caagccactgtcagaggaagaaattgaggctatcatgcaaggcggtatctactgatattg 404 Query: 400 c 400 | Sbjct: 405 c 405 Score = 48.1 bits (24), Expect = 0.042 Identities = 48/56 (85%) Strand = Plus / Plus Query: 114 agatgccgcgcattccaatgatcagattccccaagaggcatctcaaagtcccatcc 169 |||||||||| ||||| |||||| |||||||||||| ||||||| |||||||| Sbjct: 104 agatgccgcggattccgctgatcaagttccccaagaggaatctcaagctcccatcc 159
>emb|CT828192.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA018L20, full insert sequence Length = 634 Score = 172 bits (87), Expect = 1e-39 Identities = 201/241 (83%), Gaps = 3/241 (1%) Strand = Plus / Plus Query: 163 cccatccccaccagcggcgcagcctgcagatcagcacgcgaccctcatgtcccgattggg 222 |||| ||||||| |||||||| |||||||||||||| ||| ||||| |||| |||||||| Sbjct: 163 cccacccccacctgcggcgcaacctgcagatcagcatgcgtccctcctgtctcgattggg 222 Query: 223 agctaaagtagatgcaccatcttct---ggagagnnnnnnnnttaccgctttagatcaga 279 || |||| ||| |||||||||||| || ||| |||||||||||||||||| Sbjct: 223 agttaaatcagaggcaccatcttcttccggggagattaagaattaccgctttagatcaga 282 Query: 280 tgtgccacccgcaccttctcataatgctgttggagggccagcttcacaacttcccaagcg 339 |||||| || |||||||| ||| |||||||||||||||||||||| ||||| || || Sbjct: 283 tgtgccttccccaccttcttatacggctgttggagggccagcttcactccttcctaaacg 342 Query: 340 caaaccactctctgaggaagagattgaagctatcatgcaaggcggtgtcttctgatattg 399 ||| ||||| || |||||||| ||||| |||||||||||||||||| ||| ||||||||| Sbjct: 343 caagccactgtcagaggaagaaattgaggctatcatgcaaggcggtatctactgatattg 402 Query: 400 c 400 | Sbjct: 403 c 403 Score = 48.1 bits (24), Expect = 0.042 Identities = 48/56 (85%) Strand = Plus / Plus Query: 114 agatgccgcgcattccaatgatcagattccccaagaggcatctcaaagtcccatcc 169 |||||||||| ||||| |||||| |||||||||||| ||||||| |||||||| Sbjct: 102 agatgccgcggattccgctgatcaagttccccaagaggaatctcaagctcccatcc 157
>emb|CT828191.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA006G15, full insert sequence Length = 768 Score = 172 bits (87), Expect = 1e-39 Identities = 201/241 (83%), Gaps = 3/241 (1%) Strand = Plus / Plus Query: 163 cccatccccaccagcggcgcagcctgcagatcagcacgcgaccctcatgtcccgattggg 222 |||| ||||||| |||||||| |||||||||||||| ||| ||||| |||| |||||||| Sbjct: 161 cccacccccacctgcggcgcaacctgcagatcagcatgcgtccctcctgtctcgattggg 220 Query: 223 agctaaagtagatgcaccatcttct---ggagagnnnnnnnnttaccgctttagatcaga 279 || |||| ||| |||||||||||| || ||| |||||||||||||||||| Sbjct: 221 agttaaatcagaggcaccatcttcttccggggagattaagaattaccgctttagatcaga 280 Query: 280 tgtgccacccgcaccttctcataatgctgttggagggccagcttcacaacttcccaagcg 339 |||||| || |||||||| ||| |||||||||||||||||||||| ||||| || || Sbjct: 281 tgtgccttccccaccttcttatacggctgttggagggccagcttcactccttcctaaacg 340 Query: 340 caaaccactctctgaggaagagattgaagctatcatgcaaggcggtgtcttctgatattg 399 ||| ||||| || |||||||| ||||| |||||||||||||||||| ||| ||||||||| Sbjct: 341 caagccactgtcagaggaagaaattgaggctatcatgcaaggcggtatctactgatattg 400 Query: 400 c 400 | Sbjct: 401 c 401 Score = 48.1 bits (24), Expect = 0.042 Identities = 48/56 (85%) Strand = Plus / Plus Query: 114 agatgccgcgcattccaatgatcagattccccaagaggcatctcaaagtcccatcc 169 |||||||||| ||||| |||||| |||||||||||| ||||||| |||||||| Sbjct: 100 agatgccgcggattccgctgatcaagttccccaagaggaatctcaagctcccatcc 155
>gb|AY105657.1| Zea mays PCO062824 mRNA sequence Length = 817 Score = 137 bits (69), Expect = 6e-29 Identities = 216/267 (80%), Gaps = 3/267 (1%) Strand = Plus / Plus Query: 114 agatgccgcgcattccaatgatcagattccccaagaggcatctcaaagtcccatccccac 173 |||||||||| || || |||||| ||||||||| || |||| |||| ||||||| | | Sbjct: 252 agatgccgcggatccctctgatcaagttccccaagcggaatctgaaagccccatccgcgc 311 Query: 174 cag---cggcgcagcctgcagatcagcacgcgaccctcatgtcccgattgggagctaaag 230 ||| || |||| || ||||||||||||||||||||||||||||| ||||| ||||||| Sbjct: 312 cagtgccgtcgcaacccgcagatcagcacgcgaccctcatgtcccggttgggggctaaag 371 Query: 231 tagatgcaccatcttctggagagnnnnnnnnttaccgctttagatcagatgtgccacccg 290 ||| |||||||||||||||| | |||||||||||| ||||||||||| || Sbjct: 372 cagaggcaccatcttctggagggattaaaaattaccgctttagttcagatgtgccttccc 431 Query: 291 caccttctcataatgctgttggagggccagcttcacaacttcccaagcgcaaaccactct 350 |||| || |||| |||||| ||||| | |||||||| ||||| ||||| ||||| || Sbjct: 432 caccgtcgcatactgctgtaggaggtcaagcttcactccttcctaagcgtaaacctctga 491 Query: 351 ctgaggaagagattgaagctatcatgc 377 |||| ||||||||||| ||||| |||| Sbjct: 492 ctgaagaagagattgaggctattatgc 518
>gb|AY105583.1| Zea mays PCO062823 mRNA sequence Length = 567 Score = 131 bits (66), Expect = 4e-27 Identities = 157/190 (82%) Strand = Plus / Plus Query: 188 gcagatcagcacgcgaccctcatgtcccgattgggagctaaagtagatgcaccatcttct 247 ||||| ||||||||||||||||||| ||| || || ||||||| ||| |||||||||||| Sbjct: 232 gcagaccagcacgcgaccctcatgttccggttaggggctaaagcagaggcaccatcttct 291 Query: 248 ggagagnnnnnnnnttaccgctttagatcagatgtgccacccgcaccttctcataatgct 307 |||||| ||||||||||||||| |||||||| | |||||||||||| ||| Sbjct: 292 ggagagattaaaaattaccgctttagatctgatgtgccttgcccaccttctcatactgcc 351 Query: 308 gttggagggccagcttcacaacttcccaagcgcaaaccactctctgaggaagagattgaa 367 || ||||| |||||||||| ||||| ||||||||||| || |||| ||||||||||| Sbjct: 352 gtaggaggtccagcttcactccttcctaagcgcaaacccctgactgaagaagagattgag 411 Query: 368 gctatcatgc 377 ||||| |||| Sbjct: 412 gctattatgc 421
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6 Length = 30731886 Score = 109 bits (55), Expect = 1e-20 Identities = 100/115 (86%) Strand = Plus / Plus Query: 262 ttaccgctttagatcagatgtgccacccgcaccttctcataatgctgttggagggccagc 321 |||||||||||||||||||||||| || |||||||| ||| ||||||||||||||||| Sbjct: 19385168 ttaccgctttagatcagatgtgccttccccaccttcttatacggctgttggagggccagc 19385227 Query: 322 ttcacaacttcccaagcgcaaaccactctctgaggaagagattgaagctatcatg 376 ||||| ||||| || ||||| ||||| || |||||||| ||||| ||||||||| Sbjct: 19385228 ttcactccttcctaaacgcaagccactgtcagaggaagaaattgaggctatcatg 19385282 Score = 73.8 bits (37), Expect = 7e-10 Identities = 46/49 (93%) Strand = Plus / Plus Query: 174 cagcggcgcagcctgcagatcagcacgcgaccctcatgtcccgattggg 222 |||||||||| |||||||||||||||||| ||||| ||||||||||||| Sbjct: 19383143 cagcggcgcaacctgcagatcagcacgcgtccctcttgtcccgattggg 19383191 Score = 58.0 bits (29), Expect = 4e-05 Identities = 53/61 (86%) Strand = Plus / Plus Query: 114 agatgccgcgcattccaatgatcagattccccaagaggcatctcaaagtcccatccccac 173 |||||||||| ||||| |||||| |||||||||||| ||||||| |||||||||||| Sbjct: 19382941 agatgccgcggattccgctgatcaagttccccaagaggaatctcaagatcccatccccac 19383000 Query: 174 c 174 | Sbjct: 19383001 c 19383001
>dbj|AP005450.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0438E12 Length = 146851 Score = 109 bits (55), Expect = 1e-20 Identities = 100/115 (86%) Strand = Plus / Plus Query: 262 ttaccgctttagatcagatgtgccacccgcaccttctcataatgctgttggagggccagc 321 |||||||||||||||||||||||| || |||||||| ||| ||||||||||||||||| Sbjct: 89941 ttaccgctttagatcagatgtgccttccccaccttcttatacggctgttggagggccagc 90000 Query: 322 ttcacaacttcccaagcgcaaaccactctctgaggaagagattgaagctatcatg 376 ||||| ||||| || ||||| ||||| || |||||||| ||||| ||||||||| Sbjct: 90001 ttcactccttcctaaacgcaagccactgtcagaggaagaaattgaggctatcatg 90055 Score = 73.8 bits (37), Expect = 7e-10 Identities = 46/49 (93%) Strand = Plus / Plus Query: 174 cagcggcgcagcctgcagatcagcacgcgaccctcatgtcccgattggg 222 |||||||||| |||||||||||||||||| ||||| ||||||||||||| Sbjct: 87916 cagcggcgcaacctgcagatcagcacgcgtccctcttgtcccgattggg 87964 Score = 58.0 bits (29), Expect = 4e-05 Identities = 53/61 (86%) Strand = Plus / Plus Query: 114 agatgccgcgcattccaatgatcagattccccaagaggcatctcaaagtcccatccccac 173 |||||||||| ||||| |||||| |||||||||||| ||||||| |||||||||||| Sbjct: 87714 agatgccgcggattccgctgatcaagttccccaagaggaatctcaagatcccatccccac 87773 Query: 174 c 174 | Sbjct: 87774 c 87774
>dbj|AP004749.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0410C01 Length = 138424 Score = 109 bits (55), Expect = 1e-20 Identities = 100/115 (86%) Strand = Plus / Plus Query: 262 ttaccgctttagatcagatgtgccacccgcaccttctcataatgctgttggagggccagc 321 |||||||||||||||||||||||| || |||||||| ||| ||||||||||||||||| Sbjct: 3577 ttaccgctttagatcagatgtgccttccccaccttcttatacggctgttggagggccagc 3636 Query: 322 ttcacaacttcccaagcgcaaaccactctctgaggaagagattgaagctatcatg 376 ||||| ||||| || ||||| ||||| || |||||||| ||||| ||||||||| Sbjct: 3637 ttcactccttcctaaacgcaagccactgtcagaggaagaaattgaggctatcatg 3691 Score = 73.8 bits (37), Expect = 7e-10 Identities = 46/49 (93%) Strand = Plus / Plus Query: 174 cagcggcgcagcctgcagatcagcacgcgaccctcatgtcccgattggg 222 |||||||||| |||||||||||||||||| ||||| ||||||||||||| Sbjct: 1552 cagcggcgcaacctgcagatcagcacgcgtccctcttgtcccgattggg 1600 Score = 58.0 bits (29), Expect = 4e-05 Identities = 53/61 (86%) Strand = Plus / Plus Query: 114 agatgccgcgcattccaatgatcagattccccaagaggcatctcaaagtcccatccccac 173 |||||||||| ||||| |||||| |||||||||||| ||||||| |||||||||||| Sbjct: 1350 agatgccgcggattccgctgatcaagttccccaagaggaatctcaagatcccatccccac 1409 Query: 174 c 174 | Sbjct: 1410 c 1410
>gb|AC189530.1| Brassica rapa subsp. pekinensis clone KBrH001C24, complete sequence Length = 137364 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 352 tgaggaagagattgaagctat 372 ||||||||||||||||||||| Sbjct: 82998 tgaggaagagattgaagctat 83018
>gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete genome Length = 5227419 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 662 cacaagttcttttttttgtga 682 ||||||||||||||||||||| Sbjct: 863570 cacaagttcttttttttgtga 863590
>gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome Length = 5228663 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 662 cacaagttcttttttttgtga 682 ||||||||||||||||||||| Sbjct: 863464 cacaagttcttttttttgtga 863484
>dbj|AP006125.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT43I02, TM0210a, complete sequence Length = 55211 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 465 gttttgcacaagagccatgtt 485 ||||||||||||||||||||| Sbjct: 35550 gttttgcacaagagccatgtt 35530
>gb|AE016879.1| Bacillus anthracis str. Ames, complete genome Length = 5227293 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 662 cacaagttcttttttttgtga 682 ||||||||||||||||||||| Sbjct: 863569 cacaagttcttttttttgtga 863589 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 126,988,674 Number of extensions: 6707745 Number of successful extensions: 113280 Number of sequences better than 10.0: 16 Number of HSP's gapped: 113280 Number of HSP's successfully gapped: 36 Length of query: 700 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 678 Effective length of database: 18,508,616,841 Effective search space: 12548842218198 Effective search space used: 12548842218198 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
