ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf9b11 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001061696.1| Oryza sativa (japonica cultivar-group) Os05g0311500 (Os05g0311500) mRNA, complete cds Length = 1222 Score = 287 bits (145), Expect = 5e-74 Identities = 211/233 (90%) Strand = Plus / Plus Query: 189 ggaggagaagggggaggcggtgtcgctcaccgtgtggcggcggtcgctgctcttcaacgg 248 ||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||| Sbjct: 129 ggaggagaagggggaggcggtgtcgctgacggtgtggcggcggtcgctgctgttcaacgg 188 Query: 249 caaggggttcacggtgttcgacagcaacggcaacctcgtcttccgcgtcgagacctacgc 308 ||||||||||||||||||||| |||| || |||||||| ||||||||||||| |||||| Sbjct: 189 gaaggggttcacggtgttcgacggcaaggggaacctcgtgttccgcgtcgagagctacgc 248 Query: 309 ccgcggctcgccccgcgaggtcgtactcatggacgccgacggcctcgccctcctcaccgt 368 | | || ||||| | |||||||| ||||||||||||||||||| ||||||||||||| | Sbjct: 249 cggggggtcgccgagggaggtcgtgctcatggacgccgacggccgcgccctcctcaccat 308 Query: 369 ccgccgcaagaagctgagtttggcggaggagtggctcgtctacgacggcgacg 421 |||||||||||||||||| || ||||| ||||||||| ||||||||||||||| Sbjct: 309 ccgccgcaagaagctgagcttcgcggacgagtggctcatctacgacggcgacg 361 Score = 153 bits (77), Expect = 2e-33 Identities = 175/207 (84%), Gaps = 3/207 (1%) Strand = Plus / Plus Query: 543 ctgccggtaccatgtggaggggtcgtacgccagtcgcagcctccacatgttcgcctgcac 602 |||||||||| | |||||||| ||||||||| ||| ||||| || ||||||||| | | Sbjct: 513 ctgccggtacgacgtggagggctcgtacgccgcccgctgcctcgacgtgttcgcctccgc 572 Query: 603 cggcg---gcaatcagcggcggcgcgtggccacggtgtgccggaaggaggccgccatcgg 659 | ||| || | ||||||||||||||||| |||||||| | |||||||||||| | || Sbjct: 573 cagcgccggcgagcagcggcggcgcgtggcggcggtgtgcagtaaggaggccgccgtggg 632 Query: 660 accggacgtgttccggctgatggtggagccagacttcgagccggcgctggccatggccgt 719 |||||||||||||||||| |||||||||| | ||||||||||||||| ||||||||||| Sbjct: 633 cccggacgtgttccggctggtggtggagccgggcttcgagccggcgctcgccatggccgt 692 Query: 720 ggtcatactcctcgatcagatgaacgc 746 ||||| |||||||| |||||| |||| Sbjct: 693 cgtcatcctcctcgaccagatgcacgc 719
>dbj|AK058638.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-D08, full insert sequence Length = 1230 Score = 281 bits (142), Expect = 3e-72 Identities = 208/230 (90%) Strand = Plus / Plus Query: 192 ggagaagggggaggcggtgtcgctcaccgtgtggcggcggtcgctgctcttcaacggcaa 251 |||||||||||||||||||||||| || |||||||||||||||||||| |||||||| || Sbjct: 132 ggagaagggggaggcggtgtcgctgacggtgtggcggcggtcgctgctgttcaacgggaa 191 Query: 252 ggggttcacggtgttcgacagcaacggcaacctcgtcttccgcgtcgagacctacgcccg 311 ||||||||||||||||||| |||| || |||||||| ||||||||||||| ||||||| | Sbjct: 192 ggggttcacggtgttcgacggcaaggggaacctcgtgttccgcgtcgagagctacgccgg 251 Query: 312 cggctcgccccgcgaggtcgtactcatggacgccgacggcctcgccctcctcaccgtccg 371 || ||||| | |||||||| ||||||||||||||||||| ||||||||||||| |||| Sbjct: 252 ggggtcgccgagggaggtcgtgctcatggacgccgacggccgcgccctcctcaccatccg 311 Query: 372 ccgcaagaagctgagtttggcggaggagtggctcgtctacgacggcgacg 421 ||||||||||||||| || ||||| ||||||||| ||||||||||||||| Sbjct: 312 ccgcaagaagctgagcttcgcggacgagtggctcatctacgacggcgacg 361 Score = 153 bits (77), Expect = 2e-33 Identities = 175/207 (84%), Gaps = 3/207 (1%) Strand = Plus / Plus Query: 543 ctgccggtaccatgtggaggggtcgtacgccagtcgcagcctccacatgttcgcctgcac 602 |||||||||| | |||||||| ||||||||| ||| ||||| || ||||||||| | | Sbjct: 513 ctgccggtacgacgtggagggctcgtacgccgcccgctgcctcgacgtgttcgcctccgc 572 Query: 603 cggcg---gcaatcagcggcggcgcgtggccacggtgtgccggaaggaggccgccatcgg 659 | ||| || | ||||||||||||||||| |||||||| | |||||||||||| | || Sbjct: 573 cagcgccggcgagcagcggcggcgcgtggcggcggtgtgcagtaaggaggccgccgtggg 632 Query: 660 accggacgtgttccggctgatggtggagccagacttcgagccggcgctggccatggccgt 719 |||||||||||||||||| |||||||||| | ||||||||||||||| ||||||||||| Sbjct: 633 cccggacgtgttccggctggtggtggagccgggcttcgagccggcgctcgccatggccgt 692 Query: 720 ggtcatactcctcgatcagatgaacgc 746 ||||| |||||||| |||||| |||| Sbjct: 693 cgtcatcctcctcgaccagatgcacgc 719
>emb|CT830603.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI242F05, full insert sequence Length = 1230 Score = 280 bits (141), Expect = 1e-71 Identities = 210/233 (90%) Strand = Plus / Plus Query: 189 ggaggagaagggggaggcggtgtcgctcaccgtgtggcggcggtcgctgctcttcaacgg 248 ||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||| Sbjct: 139 ggaggagaagggggaggcggtgtcgctgacggtgtggcggcggtcgctgctgttcaacgg 198 Query: 249 caaggggttcacggtgttcgacagcaacggcaacctcgtcttccgcgtcgagacctacgc 308 ||||| ||||||||||||||| |||| || |||||||| ||||||||||||| |||||| Sbjct: 199 gaagggtttcacggtgttcgacggcaaggggaacctcgtgttccgcgtcgagagctacgc 258 Query: 309 ccgcggctcgccccgcgaggtcgtactcatggacgccgacggcctcgccctcctcaccgt 368 | | || ||||| | |||||||| ||||||||||||||||||| ||||||||||||| | Sbjct: 259 cggggggtcgccgagggaggtcgtgctcatggacgccgacggccgcgccctcctcaccat 318 Query: 369 ccgccgcaagaagctgagtttggcggaggagtggctcgtctacgacggcgacg 421 |||||||||||||||||| || ||||| ||||||||| ||||||||||||||| Sbjct: 319 ccgccgcaagaagctgagcttcgcggacgagtggctcatctacgacggcgacg 371 Score = 153 bits (77), Expect = 2e-33 Identities = 175/207 (84%), Gaps = 3/207 (1%) Strand = Plus / Plus Query: 543 ctgccggtaccatgtggaggggtcgtacgccagtcgcagcctccacatgttcgcctgcac 602 |||||||||| | |||||||| ||||||||| ||| ||||| || ||||||||| | | Sbjct: 523 ctgccggtacgacgtggagggctcgtacgccgcccgctgcctcgacgtgttcgcctccgc 582 Query: 603 cggcg---gcaatcagcggcggcgcgtggccacggtgtgccggaaggaggccgccatcgg 659 | ||| || | ||||||||||||||||| |||||||| | |||||||||||| | || Sbjct: 583 cagcgccggcgagcagcggcggcgcgtggcggcggtgtgcagtaaggaggccgccgtggg 642 Query: 660 accggacgtgttccggctgatggtggagccagacttcgagccggcgctggccatggccgt 719 |||||||||||||||||| |||||||||| | ||||||||||||||| ||||||||||| Sbjct: 643 cccggacgtgttccggctggtggtggagccgggcttcgagccggcgctcgccatggccgt 702 Query: 720 ggtcatactcctcgatcagatgaacgc 746 ||||| |||||||| |||||| |||| Sbjct: 703 cgtcatcctcctcgaccagatgcacgc 729
>gb|AC136524.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0474A01, complete sequence Length = 140077 Score = 234 bits (118), Expect = 6e-58 Identities = 172/190 (90%) Strand = Plus / Plus Query: 189 ggaggagaagggggaggcggtgtcgctcaccgtgtggcggcggtcgctgctcttcaacgg 248 ||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||| Sbjct: 59272 ggaggagaagggggaggcggtgtcgctgacggtgtggcggcggtcgctgctgttcaacgg 59331 Query: 249 caaggggttcacggtgttcgacagcaacggcaacctcgtcttccgcgtcgagacctacgc 308 ||||||||||||||||||||| |||| || |||||||| ||||||||||||| |||||| Sbjct: 59332 gaaggggttcacggtgttcgacggcaaggggaacctcgtgttccgcgtcgagagctacgc 59391 Query: 309 ccgcggctcgccccgcgaggtcgtactcatggacgccgacggcctcgccctcctcaccgt 368 | | || ||||| | |||||||| ||||||||||||||||||| ||||||||||||| | Sbjct: 59392 cggggggtcgccgagggaggtcgtgctcatggacgccgacggccgcgccctcctcaccat 59451 Query: 369 ccgccgcaag 378 |||||||||| Sbjct: 59452 ccgccgcaag 59461 Score = 153 bits (77), Expect = 2e-33 Identities = 175/207 (84%), Gaps = 3/207 (1%) Strand = Plus / Plus Query: 543 ctgccggtaccatgtggaggggtcgtacgccagtcgcagcctccacatgttcgcctgcac 602 |||||||||| | |||||||| ||||||||| ||| ||||| || ||||||||| | | Sbjct: 59760 ctgccggtacgacgtggagggctcgtacgccgcccgctgcctcgacgtgttcgcctccgc 59819 Query: 603 cggcg---gcaatcagcggcggcgcgtggccacggtgtgccggaaggaggccgccatcgg 659 | ||| || | ||||||||||||||||| |||||||| | |||||||||||| | || Sbjct: 59820 cagcgccggcgagcagcggcggcgcgtggcggcggtgtgcagtaaggaggccgccgtggg 59879 Query: 660 accggacgtgttccggctgatggtggagccagacttcgagccggcgctggccatggccgt 719 |||||||||||||||||| |||||||||| | ||||||||||||||| ||||||||||| Sbjct: 59880 cccggacgtgttccggctggtggtggagccgggcttcgagccggcgctcgccatggccgt 59939 Query: 720 ggtcatactcctcgatcagatgaacgc 746 ||||| |||||||| |||||| |||| Sbjct: 59940 cgtcatcctcctcgaccagatgcacgc 59966 Score = 58.0 bits (29), Expect = 8e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 377 agaagctgagtttggcggaggagtggctcgtctacgacggcgacg 421 |||||||||| || ||||| ||||||||| ||||||||||||||| Sbjct: 59564 agaagctgagcttcgcggacgagtggctcatctacgacggcgacg 59608
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5 Length = 29737217 Score = 234 bits (118), Expect = 6e-58 Identities = 172/190 (90%) Strand = Plus / Plus Query: 189 ggaggagaagggggaggcggtgtcgctcaccgtgtggcggcggtcgctgctcttcaacgg 248 ||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||| Sbjct: 14111717 ggaggagaagggggaggcggtgtcgctgacggtgtggcggcggtcgctgctgttcaacgg 14111776 Query: 249 caaggggttcacggtgttcgacagcaacggcaacctcgtcttccgcgtcgagacctacgc 308 ||||||||||||||||||||| |||| || |||||||| ||||||||||||| |||||| Sbjct: 14111777 gaaggggttcacggtgttcgacggcaaggggaacctcgtgttccgcgtcgagagctacgc 14111836 Query: 309 ccgcggctcgccccgcgaggtcgtactcatggacgccgacggcctcgccctcctcaccgt 368 | | || ||||| | |||||||| ||||||||||||||||||| ||||||||||||| | Sbjct: 14111837 cggggggtcgccgagggaggtcgtgctcatggacgccgacggccgcgccctcctcaccat 14111896 Query: 369 ccgccgcaag 378 |||||||||| Sbjct: 14111897 ccgccgcaag 14111906 Score = 153 bits (77), Expect = 2e-33 Identities = 175/207 (84%), Gaps = 3/207 (1%) Strand = Plus / Plus Query: 543 ctgccggtaccatgtggaggggtcgtacgccagtcgcagcctccacatgttcgcctgcac 602 |||||||||| | |||||||| ||||||||| ||| ||||| || ||||||||| | | Sbjct: 14112205 ctgccggtacgacgtggagggctcgtacgccgcccgctgcctcgacgtgttcgcctccgc 14112264 Query: 603 cggcg---gcaatcagcggcggcgcgtggccacggtgtgccggaaggaggccgccatcgg 659 | ||| || | ||||||||||||||||| |||||||| | |||||||||||| | || Sbjct: 14112265 cagcgccggcgagcagcggcggcgcgtggcggcggtgtgcagtaaggaggccgccgtggg 14112324 Query: 660 accggacgtgttccggctgatggtggagccagacttcgagccggcgctggccatggccgt 719 |||||||||||||||||| |||||||||| | ||||||||||||||| ||||||||||| Sbjct: 14112325 cccggacgtgttccggctggtggtggagccgggcttcgagccggcgctcgccatggccgt 14112384 Query: 720 ggtcatactcctcgatcagatgaacgc 746 ||||| |||||||| |||||| |||| Sbjct: 14112385 cgtcatcctcctcgaccagatgcacgc 14112411 Score = 58.0 bits (29), Expect = 8e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 377 agaagctgagtttggcggaggagtggctcgtctacgacggcgacg 421 |||||||||| || ||||| ||||||||| ||||||||||||||| Sbjct: 14112009 agaagctgagcttcgcggacgagtggctcatctacgacggcgacg 14112053 Score = 48.1 bits (24), Expect = 0.073 Identities = 36/40 (90%) Strand = Plus / Minus Query: 231 gtcgctgctcttcaacggcaaggggttcacggtgttcgac 270 |||||| || |||||| ||| ||||||||||||||||||| Sbjct: 23681164 gtcgctactgttcaactgcagggggttcacggtgttcgac 23681125 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 361 ctcaccgtccgccgcaagaag 381 ||||||||||||||||||||| Sbjct: 23681034 ctcaccgtccgccgcaagaag 23681014
>emb|CT834971.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN024H03, full insert sequence Length = 874 Score = 83.8 bits (42), Expect = 1e-12 Identities = 72/82 (87%) Strand = Plus / Plus Query: 189 ggaggagaagggggaggcggtgtcgctcaccgtgtggcggcggtcgctgctcttcaacgg 248 ||||||| ||| |||||||| | |||| || ||||||||| ||||||||| |||||| | Sbjct: 191 ggaggaggaggaggaggcggcggcgctgacggtgtggcggaagtcgctgctgttcaactg 250 Query: 249 caaggggttcacggtgttcgac 270 |||||||||||||||||||||| Sbjct: 251 caaggggttcacggtgttcgac 272
>dbj|AK241063.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J065065F16, full insert sequence Length = 1100 Score = 83.8 bits (42), Expect = 1e-12 Identities = 72/82 (87%) Strand = Plus / Minus Query: 189 ggaggagaagggggaggcggtgtcgctcaccgtgtggcggcggtcgctgctcttcaacgg 248 ||||||| ||| |||||||| | |||| || ||||||||| ||||||||| |||||| | Sbjct: 907 ggaggaggaggaggaggcggcggcgctgacggtgtggcggaagtcgctgctgttcaactg 848 Query: 249 caaggggttcacggtgttcgac 270 |||||||||||||||||||||| Sbjct: 847 caaggggttcacggtgttcgac 826
>ref|NM_001051159.1| Oryza sativa (japonica cultivar-group) Os01g0817600 (Os01g0817600) mRNA, complete cds Length = 1002 Score = 83.8 bits (42), Expect = 1e-12 Identities = 72/82 (87%) Strand = Plus / Plus Query: 189 ggaggagaagggggaggcggtgtcgctcaccgtgtggcggcggtcgctgctcttcaacgg 248 ||||||| ||| |||||||| | |||| || ||||||||| ||||||||| |||||| | Sbjct: 432 ggaggaggaggaggaggcggcggcgctgacggtgtggcggaagtcgctgctgttcaactg 491 Query: 249 caaggggttcacggtgttcgac 270 |||||||||||||||||||||| Sbjct: 492 caaggggttcacggtgttcgac 513
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 83.8 bits (42), Expect = 1e-12 Identities = 72/82 (87%) Strand = Plus / Plus Query: 189 ggaggagaagggggaggcggtgtcgctcaccgtgtggcggcggtcgctgctcttcaacgg 248 ||||||| ||| |||||||| | |||| || ||||||||| ||||||||| |||||| | Sbjct: 34794636 ggaggaggaggaggaggcggcggcgctgacggtgtggcggaagtcgctgctgttcaactg 34794695 Query: 249 caaggggttcacggtgttcgac 270 |||||||||||||||||||||| Sbjct: 34794696 caaggggttcacggtgttcgac 34794717 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 414 cggcgacggcgacgagctggc 434 ||||||||||||||||||||| Sbjct: 14085081 cggcgacggcgacgagctggc 14085101
>dbj|AP003411.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1148D12 Length = 132060 Score = 83.8 bits (42), Expect = 1e-12 Identities = 72/82 (87%) Strand = Plus / Plus Query: 189 ggaggagaagggggaggcggtgtcgctcaccgtgtggcggcggtcgctgctcttcaacgg 248 ||||||| ||| |||||||| | |||| || ||||||||| ||||||||| |||||| | Sbjct: 109876 ggaggaggaggaggaggcggcggcgctgacggtgtggcggaagtcgctgctgttcaactg 109935 Query: 249 caaggggttcacggtgttcgac 270 |||||||||||||||||||||| Sbjct: 109936 caaggggttcacggtgttcgac 109957
>dbj|AP003255.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0454H12 Length = 161004 Score = 83.8 bits (42), Expect = 1e-12 Identities = 72/82 (87%) Strand = Plus / Plus Query: 189 ggaggagaagggggaggcggtgtcgctcaccgtgtggcggcggtcgctgctcttcaacgg 248 ||||||| ||| |||||||| | |||| || ||||||||| ||||||||| |||||| | Sbjct: 53808 ggaggaggaggaggaggcggcggcgctgacggtgtggcggaagtcgctgctgttcaactg 53867 Query: 249 caaggggttcacggtgttcgac 270 |||||||||||||||||||||| Sbjct: 53868 caaggggttcacggtgttcgac 53889
>gb|AY144442.1| Sorghum bicolor BAC 95A23/98N8.1 Rph region, partial sequence Length = 268433 Score = 79.8 bits (40), Expect = 2e-11 Identities = 158/193 (81%), Gaps = 7/193 (3%) Strand = Plus / Plus Query: 231 gtcgctgctcttcaacggcaaggggttcacggtgttcgacagcaacggcaacctcgtctt 290 |||||||||||||||| || | || ||||| || | |||| ||||||| |||||| ||| Sbjct: 184350 gtcgctgctcttcaactgcgacggcttcaccgtctacgacgccaacggcgacctcgcctt 184409 Query: 291 ccgcgtcgagacctacgcccgcggctcgccccgc-gaggtcgtactcatggacgccgacg 349 ||||||||| ||||||| | |||| ||| |||||||| ||||||||||||| || Sbjct: 184410 ccgcgtcgactgctacgccagg----cgccacgccgaggtcgtgctcatggacgccg-cg 184464 Query: 350 gcctcgcc-ctcctcaccgtccgccgcaagaagctgagtttggcggaggagtggctcgtc 408 | |||| |||||||||||||||||||||| ||| || |||||||| ||||||||| Sbjct: 184465 ggggcgccgctcctcaccgtccgccgcaagaggctcagcctggcggagcgctggctcgtc 184524 Query: 409 tacgacggcgacg 421 ||||||||||||| Sbjct: 184525 tacgacggcgacg 184537 Score = 63.9 bits (32), Expect = 1e-06 Identities = 68/80 (85%) Strand = Plus / Plus Query: 220 gtgtggcggcggtcgctgctcttcaacggcaaggggttcacggtgttcgacagcaacggc 279 |||||||| ||||||||||||||||| || | || ||||| || |||||| ||||||| Sbjct: 199993 gtgtggcgcaggtcgctgctcttcaactgcgacggcttcaccgtcttcgacgccaacggc 200052 Query: 280 aacctcgtcttccgcgtcga 299 |||||| |||||||||||| Sbjct: 200053 gacctcgccttccgcgtcga 200072 Score = 54.0 bits (27), Expect = 0.001 Identities = 83/99 (83%), Gaps = 2/99 (2%) Strand = Plus / Minus Query: 324 cgaggtcgtactcatggacgccgacggcctcgcc-ctcctcaccgtccgccgcaagaagc 382 ||||||||| ||||||||||||| ||| |||| |||||||||||||||||||||| || Sbjct: 240986 cgaggtcgtgctcatggacgccg-cgggggcgccgctcctcaccgtccgccgcaagaggc 240928 Query: 383 tgagtttggcggaggagtggctcgtctacgacggcgacg 421 | || |||| ||| |||| ||||||| ||||||||| Sbjct: 240927 tcagcctggccgagcgctggcacgtctaccacggcgacg 240889 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 138 caaggtgcaccccaacgccgc 158 ||||||||||||||||||||| Sbjct: 184236 caaggtgcaccccaacgccgc 184256 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 138 caaggtgcaccccaacgccgc 158 ||||||||||||||||||||| Sbjct: 241199 caaggtgcaccccaacgccgc 241179
>ref|NM_001062406.1| Oryza sativa (japonica cultivar-group) Os05g0484800 (Os05g0484800) mRNA, complete cds Length = 927 Score = 48.1 bits (24), Expect = 0.073 Identities = 36/40 (90%) Strand = Plus / Plus Query: 231 gtcgctgctcttcaacggcaaggggttcacggtgttcgac 270 |||||| || |||||| ||| ||||||||||||||||||| Sbjct: 216 gtcgctactgttcaactgcagggggttcacggtgttcgac 255 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 361 ctcaccgtccgccgcaagaag 381 ||||||||||||||||||||| Sbjct: 346 ctcaccgtccgccgcaagaag 366
>gb|AC118289.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0099O15, complete sequence Length = 137357 Score = 48.1 bits (24), Expect = 0.073 Identities = 36/40 (90%) Strand = Plus / Minus Query: 231 gtcgctgctcttcaacggcaaggggttcacggtgttcgac 270 |||||| || |||||| ||| ||||||||||||||||||| Sbjct: 71169 gtcgctactgttcaactgcagggggttcacggtgttcgac 71130 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 361 ctcaccgtccgccgcaagaag 381 ||||||||||||||||||||| Sbjct: 71039 ctcaccgtccgccgcaagaag 71019
>dbj|AK071834.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023118G11, full insert sequence Length = 930 Score = 48.1 bits (24), Expect = 0.073 Identities = 36/40 (90%) Strand = Plus / Plus Query: 231 gtcgctgctcttcaacggcaaggggttcacggtgttcgac 270 |||||| || |||||| ||| ||||||||||||||||||| Sbjct: 218 gtcgctactgttcaactgcagggggttcacggtgttcgac 257 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 361 ctcaccgtccgccgcaagaag 381 ||||||||||||||||||||| Sbjct: 348 ctcaccgtccgccgcaagaag 368
>gb|CP000113.1| Myxococcus xanthus DK 1622, complete genome Length = 9139763 Score = 46.1 bits (23), Expect = 0.29 Identities = 23/23 (100%) Strand = Plus / Minus Query: 266 tcgacagcaacggcaacctcgtc 288 ||||||||||||||||||||||| Sbjct: 430040 tcgacagcaacggcaacctcgtc 430018
>gb|AC146577.2| Pan troglodytes BAC clone CH251-189A13 from Y, complete sequence Length = 171643 Score = 46.1 bits (23), Expect = 0.29 Identities = 23/23 (100%) Strand = Plus / Minus Query: 781 agccatgcatgcctgcagctagc 803 ||||||||||||||||||||||| Sbjct: 163825 agccatgcatgcctgcagctagc 163803
>gb|AC145770.1| Pan troglodytes BAC clone CH251-576K13 from Y, complete sequence Length = 177726 Score = 46.1 bits (23), Expect = 0.29 Identities = 23/23 (100%) Strand = Plus / Plus Query: 781 agccatgcatgcctgcagctagc 803 ||||||||||||||||||||||| Sbjct: 137283 agccatgcatgcctgcagctagc 137305
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9 Length = 22696651 Score = 46.1 bits (23), Expect = 0.29 Identities = 23/23 (100%) Strand = Plus / Minus Query: 414 cggcgacggcgacgagctggcgc 436 ||||||||||||||||||||||| Sbjct: 22202473 cggcgacggcgacgagctggcgc 22202451
>dbj|AP006171.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0070E11 Length = 142855 Score = 46.1 bits (23), Expect = 0.29 Identities = 23/23 (100%) Strand = Plus / Minus Query: 414 cggcgacggcgacgagctggcgc 436 ||||||||||||||||||||||| Sbjct: 22371 cggcgacggcgacgagctggcgc 22349
>gb|AC090885.1|AC090885 Homo sapiens chromosome 3 clone RP11-270I6 map 3p, complete sequence Length = 193264 Score = 46.1 bits (23), Expect = 0.29 Identities = 23/23 (100%) Strand = Plus / Minus Query: 43 cctttgctttgacttcctctgca 65 ||||||||||||||||||||||| Sbjct: 95711 cctttgctttgacttcctctgca 95689
>gb|AC137695.3| Homo sapiens 3 BAC RP13-685P2 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 138278 Score = 46.1 bits (23), Expect = 0.29 Identities = 23/23 (100%) Strand = Plus / Plus Query: 43 cctttgctttgacttcctctgca 65 ||||||||||||||||||||||| Sbjct: 109590 cctttgctttgacttcctctgca 109612
>gb|AC066589.3|AC066589 Homo sapiens chromosome 3 clone RP11-309M10 map 3p, complete sequence Length = 182171 Score = 46.1 bits (23), Expect = 0.29 Identities = 23/23 (100%) Strand = Plus / Plus Query: 43 cctttgctttgacttcctctgca 65 ||||||||||||||||||||||| Sbjct: 157106 cctttgctttgacttcctctgca 157128
>dbj|AP006170.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0042B15 Length = 157981 Score = 46.1 bits (23), Expect = 0.29 Identities = 23/23 (100%) Strand = Plus / Minus Query: 414 cggcgacggcgacgagctggcgc 436 ||||||||||||||||||||||| Sbjct: 123966 cggcgacggcgacgagctggcgc 123944
>dbj|BS000576.2| Pan troglodytes chromosome Y clone:PTB-045N05, complete sequences Length = 190089 Score = 46.1 bits (23), Expect = 0.29 Identities = 23/23 (100%) Strand = Plus / Plus Query: 781 agccatgcatgcctgcagctagc 803 ||||||||||||||||||||||| Sbjct: 142368 agccatgcatgcctgcagctagc 142390
>gb|AC069246.6| Homo sapiens chromosome 3 clone RP11-221A8 map 3p, complete sequence Length = 175121 Score = 46.1 bits (23), Expect = 0.29 Identities = 23/23 (100%) Strand = Plus / Plus Query: 43 cctttgctttgacttcctctgca 65 ||||||||||||||||||||||| Sbjct: 103007 cctttgctttgacttcctctgca 103029
>gb|CP000477.1| Methanosaeta thermophila PT, complete genome Length = 1879471 Score = 44.1 bits (22), Expect = 1.1 Identities = 25/26 (96%) Strand = Plus / Minus Query: 957 cctcatcacgaatgagccgagatgac 982 ||||||||||||||||| |||||||| Sbjct: 1241022 cctcatcacgaatgagcagagatgac 1240997
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 704 cgctggccatggccgtggtcat 725 |||||||||||||||||||||| Sbjct: 3619563 cgctggccatggccgtggtcat 3619542
>ref|XM_747911.1| Aspergillus fumigatus Af293 molybdopterin cofactor biosynthetic protein (Afu1g16380) partial mRNA Length = 1323 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Plus Query: 351 cctcgccctcctcaccgtccgc 372 |||||||||||||||||||||| Sbjct: 161 cctcgccctcctcaccgtccgc 182
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7 Length = 29644043 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 184 gcggcggaggagaagggggagg 205 |||||||||||||||||||||| Sbjct: 24223277 gcggcggaggagaagggggagg 24223256 Score = 42.1 bits (21), Expect = 4.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 186 ggcggaggagaagggggaggcggtg 210 |||||||||||||||| |||||||| Sbjct: 25844337 ggcggaggagaaggggaaggcggtg 25844361
>dbj|AP004275.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0453E05 Length = 137364 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 184 gcggcggaggagaagggggagg 205 |||||||||||||||||||||| Sbjct: 34828 gcggcggaggagaagggggagg 34807
>gb|AY107588.1| Zea mays PCO070301 mRNA sequence Length = 805 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 218 ccgtgtggcggcggtcgctgct 239 |||||||||||||||||||||| Sbjct: 310 ccgtgtggcggcggtcgctgct 289
>ref|XM_001228062.1| Chaetomium globosum CBS 148.51 predicted protein (CHGG_10136) mRNA, complete cds Length = 525 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 667 gtgttccggctgatggtggag 687 ||||||||||||||||||||| Sbjct: 209 gtgttccggctgatggtggag 229
>ref|NM_001073768.1| Oryza sativa (japonica cultivar-group) Os12g0608500 (Os12g0608500) mRNA, complete cds Length = 2771 Score = 42.1 bits (21), Expect = 4.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 410 acgacggcgacggcgacgagctggc 434 |||||||||||||||||||| |||| Sbjct: 70 acgacggcgacggcgacgagatggc 46
>ref|NM_001057411.1| Oryza sativa (japonica cultivar-group) Os03g0672900 (Os03g0672900) mRNA, complete cds Length = 2271 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 410 acgacggcgacggcgacgagc 430 ||||||||||||||||||||| Sbjct: 725 acgacggcgacggcgacgagc 745
>ref|NM_001049522.1| Oryza sativa (japonica cultivar-group) Os01g0352100 (Os01g0352100) mRNA, complete cds Length = 1404 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 414 cggcgacggcgacgagctggc 434 ||||||||||||||||||||| Sbjct: 209 cggcgacggcgacgagctggc 229
>gb|AE004091.2| Pseudomonas aeruginosa PAO1, complete genome Length = 6264404 Score = 42.1 bits (21), Expect = 4.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 405 cgtctacgacggcgacggcgacgag 429 |||| |||||||||||||||||||| Sbjct: 1471073 cgtcaacgacggcgacggcgacgag 1471049
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 42.1 bits (21), Expect = 4.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 184 gcggcggaggagaagggggaggcgg 208 |||||||||||| |||||||||||| Sbjct: 1882198 gcggcggaggaggagggggaggcgg 1882174
>gb|AC152104.2| Ostreococcus sp. CCE9901 clone JGIACFB-9A2, complete sequence Length = 37168 Score = 42.1 bits (21), Expect = 4.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 404 tcgtctacgacggcgacggcgacga 428 |||||| |||||||||||||||||| Sbjct: 6737 tcgtcttcgacggcgacggcgacga 6761
>gb|AY657530.1| Synthetic construct Peudomonas aeruginosa clone FLH040524.01F PA1359 gene, partial cds Length = 657 Score = 42.1 bits (21), Expect = 4.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 405 cgtctacgacggcgacggcgacgag 429 |||| |||||||||||||||||||| Sbjct: 600 cgtcaacgacggcgacggcgacgag 624
>gb|AC090683.7| Oryza sativa chromosome 3 BAC OSJNBa0035I24 genomic sequence, complete sequence Length = 134728 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 410 acgacggcgacggcgacgagc 430 ||||||||||||||||||||| Sbjct: 104478 acgacggcgacggcgacgagc 104458
>gb|AC138739.8| Mus musculus chromosome 9, clone RP23-380A10, complete sequence Length = 217813 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 875 gaaaaaagagggggcaggaag 895 ||||||||||||||||||||| Sbjct: 154695 gaaaaaagagggggcaggaag 154715
>dbj|AP008934.1| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 DNA, complete genome Length = 2516575 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1093 tctttttgttagtgaaaataa 1113 ||||||||||||||||||||| Sbjct: 2178550 tctttttgttagtgaaaataa 2178530
>gb|AC068657.6| Homo sapiens chromosome 5 clone CTB-67I13, complete sequence Length = 128332 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 65 atcctgcaaagcaaagtagac 85 ||||||||||||||||||||| Sbjct: 115048 atcctgcaaagcaaagtagac 115028
>gb|AE012302.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 210 of 460 of the complete genome Length = 12828 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 697 gagccggcgctggccatggcc 717 ||||||||||||||||||||| Sbjct: 12407 gagccggcgctggccatggcc 12387
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12 Length = 27566993 Score = 42.1 bits (21), Expect = 4.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 410 acgacggcgacggcgacgagctggc 434 |||||||||||||||||||| |||| Sbjct: 25733410 acgacggcgacggcgacgagatggc 25733386
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8 Length = 28434780 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 410 acgacggcgacggcgacgagc 430 ||||||||||||||||||||| Sbjct: 20158492 acgacggcgacggcgacgagc 20158512
>gb|AC008706.5| Homo sapiens chromosome 5 clone CTB-77M23, complete sequence Length = 164394 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 65 atcctgcaaagcaaagtagac 85 ||||||||||||||||||||| Sbjct: 147118 atcctgcaaagcaaagtagac 147138
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6 Length = 30731886 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 190 gaggagaagggggaggcggtg 210 ||||||||||||||||||||| Sbjct: 24157599 gaggagaagggggaggcggtg 24157579
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 410 acgacggcgacggcgacgagc 430 ||||||||||||||||||||| Sbjct: 26377471 acgacggcgacggcgacgagc 26377491
>gb|AC116369.5| Oryza sativa chromosome 3 BAC OSJNBb0113I20 genomic sequence, complete sequence Length = 122939 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 410 acgacggcgacggcgacgagc 430 ||||||||||||||||||||| Sbjct: 115621 acgacggcgacggcgacgagc 115641
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 697 gagccggcgctggccatggcc 717 ||||||||||||||||||||| Sbjct: 2652598 gagccggcgctggccatggcc 2652618
>gb|AC108011.4| Homo sapiens BAC clone RP13-511O19 from 4, complete sequence Length = 81894 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 825 tcaatgcacaaatcatacaga 845 ||||||||||||||||||||| Sbjct: 63712 tcaatgcacaaatcatacaga 63732
>gb|AC150251.1| Uncultured bacterium zdt-33i5 clone zdt-33i5, complete sequence Length = 36957 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 118 ctgccgtcgatgaccagggtc 138 ||||||||||||||||||||| Sbjct: 15964 ctgccgtcgatgaccagggtc 15984
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome Length = 1849742 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 351 cctcgccctcctcaccgtccg 371 ||||||||||||||||||||| Sbjct: 99786 cctcgccctcctcaccgtccg 99806
>dbj|AP003369.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1102E12 Length = 155692 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 414 cggcgacggcgacgagctggc 434 ||||||||||||||||||||| Sbjct: 24795 cggcgacggcgacgagctggc 24815
>dbj|AP003711.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0417G12 Length = 163568 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 190 gaggagaagggggaggcggtg 210 ||||||||||||||||||||| Sbjct: 91057 gaggagaagggggaggcggtg 91037
>dbj|AP005301.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0077M12 Length = 145337 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 410 acgacggcgacggcgacgagc 430 ||||||||||||||||||||| Sbjct: 24278 acgacggcgacggcgacgagc 24298
>dbj|AP004005.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1188_F05 Length = 117045 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 410 acgacggcgacggcgacgagc 430 ||||||||||||||||||||| Sbjct: 105038 acgacggcgacggcgacgagc 105058
>dbj|AK110310.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-164-B04, full insert sequence Length = 2771 Score = 42.1 bits (21), Expect = 4.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 410 acgacggcgacggcgacgagctggc 434 |||||||||||||||||||| |||| Sbjct: 70 acgacggcgacggcgacgagatggc 46
>dbj|AK107367.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-127-A12, full insert sequence Length = 2205 Score = 42.1 bits (21), Expect = 4.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 410 acgacggcgacggcgacgagctggc 434 |||||||||||||||||||| |||| Sbjct: 91 acgacggcgacggcgacgagatggc 67
>emb|BX824537.1|CNS0A7TX Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH54ZH01 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1851 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1096 ttttgttagtgaaaataaata 1116 ||||||||||||||||||||| Sbjct: 1309 ttttgttagtgaaaataaata 1329
>dbj|AK072222.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013165K20, full insert sequence Length = 1405 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 414 cggcgacggcgacgagctggc 434 ||||||||||||||||||||| Sbjct: 210 cggcgacggcgacgagctggc 230
>dbj|AP004009.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1339_F05 Length = 132708 Score = 42.1 bits (21), Expect = 4.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 186 ggcggaggagaagggggaggcggtg 210 |||||||||||||||| |||||||| Sbjct: 14785 ggcggaggagaaggggaaggcggtg 14809
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 351 cctcgccctcctcaccgtccg 371 ||||||||||||||||||||| Sbjct: 1812979 cctcgccctcctcaccgtccg 1812959
>emb|AL731881.4|CNS08C8L Oryza sativa chromosome 12, . BAC OSJNBa0002L05 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 167131 Score = 42.1 bits (21), Expect = 4.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 410 acgacggcgacggcgacgagctggc 434 |||||||||||||||||||| |||| Sbjct: 100648 acgacggcgacggcgacgagatggc 100624 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 181,697,781 Number of extensions: 9944139 Number of successful extensions: 215298 Number of sequences better than 10.0: 66 Number of HSP's gapped: 215297 Number of HSP's successfully gapped: 86 Length of query: 1190 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1167 Effective length of database: 18,503,978,556 Effective search space: 21594142974852 Effective search space used: 21594142974852 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
